rbbt-util 5.34.21 → 5.34.22
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- checksums.yaml +4 -4
- data/lib/rbbt/workflow/dependencies.rb +1 -3
- data/share/rbbt_commands/study/task +2 -2
- data/share/rbbt_commands/workflow/task +2 -2
- metadata +1 -1
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 40183cfe120bb6545a1bb59f150bb3cac9426ce018d18485afdbf0c8f1de92b2
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4
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+
data.tar.gz: fd625b45572be4a158bc9f08007225e284659ec9ef26fbe66a2e9ae7fb84ce9f
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: f9f2a5ee2e22b84c8bce0f0da023a39cb917a8210ab1c9a4daca7d67902134221fd671da62ca19a2ce02fb06049ea00f4a8a282a1906235f91380d936240b987
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7
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+
data.tar.gz: 5124409cb58db3eea7029042ec8671e13075bd814b40a25a905a56ccc52ae660e9981f3146f8a2ecaad2c122ea6edea1ea8b4c7d1a1191a58621c797f317577c
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@@ -72,9 +72,7 @@ module Workflow
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72
72
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def setup_override_dependency(dep, workflow, task_name)
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73
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return [] if dep == :skip || dep == 'skip'
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74
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75
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-
if Step === dep
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76
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-
dep = dep.load
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77
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-
else
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75
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+
if ! Step === dep
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78
76
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located = Open.exists?(dep)
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77
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dep = Workflow.load_step(dep)
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80
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end
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@@ -106,7 +106,7 @@ options = SOPT.get <<EOF
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106
106
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-as--array_separator* Change the character that separates elements of Arrays, ',', '|', or '\\n' by default:
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-cl--clean Clean the last step of the job so that it gets recomputed:
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108
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-rcl--recursive_clean Clean the last step and its dependencies to recompute the job completely:
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109
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-
-n--name* Job name to use. The name '
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109
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+
-n--name* Job name to use. The name '#{Workflow::DEFAULT_NAME}' is used by default:
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-pn--printname Print the name of the job and exit without starting it:
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-rw--require_workflow* Workflows to require, separated by commas
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EOF
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@@ -155,7 +155,7 @@ end
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155
155
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156
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usage workflow, task if help
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158
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-
name = options.delete(:name) ||
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158
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+
name = options.delete(:name) || Workflow::DEFAULT_NAME
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160
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# get job args
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sopt_option_string = SOPT_options(workflow, task)
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@@ -178,7 +178,7 @@ available. Examples can be enacted using `rbbt workflow example <workflow>
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[<task>] [<example>]`.
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When a task is enacted a job is instantiated. This job is identified by the
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181
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-
`jobname` (which is *
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181
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+
`jobname` (which is *#{Workflow::DEFAULT_NAME}* unless specified otherwise) and the values of the
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parameters; these two things determine the filename under which the job result
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183
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will be saved. If the taks is enacted using the same `jobname` and parameters
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it will result in the same job, pointing to the same result file.
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@@ -194,7 +194,7 @@ The `recursive_clean` cleans all the job dependency steps recursively.
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194
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-wda--workdir_all* Change the working directory of ALL workflow
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-as--array_separator* Change the character that separates elements of Arrays, ',', '|', or '\\n' by default
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196
196
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-fs--field_separator* Change the character that separates fields of TSV files '\\t' by default
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197
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-
-jn--jobname* Job name to use. The name '
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197
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+
-jn--jobname* Job name to use. The name '#{Workflow::DEFAULT_NAME}' is used by default
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198
198
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-pn--printname Print the name of the job and exit without starting it
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199
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-pf--printpath Print the path of the job result
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200
200
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-cl--clean Clean the last step of the job so that it gets recomputed
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