rbbt-util 5.34.21 → 5.34.22
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/workflow/dependencies.rb +1 -3
- data/share/rbbt_commands/study/task +2 -2
- data/share/rbbt_commands/workflow/task +2 -2
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 40183cfe120bb6545a1bb59f150bb3cac9426ce018d18485afdbf0c8f1de92b2
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data.tar.gz: fd625b45572be4a158bc9f08007225e284659ec9ef26fbe66a2e9ae7fb84ce9f
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: f9f2a5ee2e22b84c8bce0f0da023a39cb917a8210ab1c9a4daca7d67902134221fd671da62ca19a2ce02fb06049ea00f4a8a282a1906235f91380d936240b987
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data.tar.gz: 5124409cb58db3eea7029042ec8671e13075bd814b40a25a905a56ccc52ae660e9981f3146f8a2ecaad2c122ea6edea1ea8b4c7d1a1191a58621c797f317577c
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@@ -72,9 +72,7 @@ module Workflow
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def setup_override_dependency(dep, workflow, task_name)
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return [] if dep == :skip || dep == 'skip'
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if Step === dep
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dep = dep.load
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else
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if ! Step === dep
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located = Open.exists?(dep)
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dep = Workflow.load_step(dep)
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end
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@@ -106,7 +106,7 @@ options = SOPT.get <<EOF
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-as--array_separator* Change the character that separates elements of Arrays, ',', '|', or '\\n' by default:
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-cl--clean Clean the last step of the job so that it gets recomputed:
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-rcl--recursive_clean Clean the last step and its dependencies to recompute the job completely:
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-n--name* Job name to use. The name '
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-n--name* Job name to use. The name '#{Workflow::DEFAULT_NAME}' is used by default:
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-pn--printname Print the name of the job and exit without starting it:
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-rw--require_workflow* Workflows to require, separated by commas
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EOF
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@@ -155,7 +155,7 @@ end
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usage workflow, task if help
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name = options.delete(:name) ||
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name = options.delete(:name) || Workflow::DEFAULT_NAME
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# get job args
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sopt_option_string = SOPT_options(workflow, task)
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@@ -178,7 +178,7 @@ available. Examples can be enacted using `rbbt workflow example <workflow>
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[<task>] [<example>]`.
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When a task is enacted a job is instantiated. This job is identified by the
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`jobname` (which is *
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`jobname` (which is *#{Workflow::DEFAULT_NAME}* unless specified otherwise) and the values of the
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parameters; these two things determine the filename under which the job result
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will be saved. If the taks is enacted using the same `jobname` and parameters
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it will result in the same job, pointing to the same result file.
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@@ -194,7 +194,7 @@ The `recursive_clean` cleans all the job dependency steps recursively.
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-wda--workdir_all* Change the working directory of ALL workflow
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-as--array_separator* Change the character that separates elements of Arrays, ',', '|', or '\\n' by default
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-fs--field_separator* Change the character that separates fields of TSV files '\\t' by default
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-jn--jobname* Job name to use. The name '
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-jn--jobname* Job name to use. The name '#{Workflow::DEFAULT_NAME}' is used by default
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-pn--printname Print the name of the job and exit without starting it
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-pf--printpath Print the path of the job result
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-cl--clean Clean the last step of the job so that it gets recomputed
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