rbbt-util 5.29.1 → 5.30.2

data/lib/rbbt/tsv.rb

@@ -113,8 +113,8 @@ module TSV
 
     data.entity_options = entity_options
 
-    if Path === source and data.identifiers
-      data.identifiers = Path.setup(data.identifiers, source.pkgdir, source.resource)
+    if Path === source && data.identifiers
+      Path.setup(data.identifiers, source.pkgdir, source.resource)
     end
 
     if data.respond_to? :persistence_path
@@ -124,6 +124,10 @@ module TSV
       data.clear
       data.annotate h
     end
+
+    data.read if data.respond_to? :persistence_path
+
+    data
   end
 
   def self.parse_header(stream, options = {})

data/lib/rbbt/util/cmd.rb

@@ -217,7 +217,7 @@ module CMD
     end
   end
 
-  def self.cmd_log(*args)
+  def self.cmd_pid(*args)
     all_args = *args
 
     all_args << {} unless Hash === all_args.last
@@ -248,4 +248,9 @@ module CMD
     nil
   end
 
+  def self.cmd_log(*args)
+    cmd_pid(*args)
+    nil
+  end
+
 end

data/lib/rbbt/util/misc/options.rb

@@ -242,48 +242,6 @@ module Misc
 
     return options
 
-    options = {}
-    string.split(/#/).each do |str|
-      if str.match(/(.*)=(.*)/)
-        option, value = $1, $2
-      else
-        option, value = str, true
-      end
-
-      option = option.sub(":",'').to_sym if option.chars.first == ':'
-      value  = value.sub(":",'').to_sym if String === value and value.chars.first == ':'
-
-      if value == true
-        options[option] = option.to_s.chars.first != '!' 
-      else
-        options[option] = Thread.start do
-          $SAFE = 0;
-          case 
-          when value =~ /^(?:true|T)$/i
-            true
-          when value =~ /^(?:false|F)$/i
-            false
-          when Symbol === value
-            value
-          when (String === value and value =~ /^\/(.*)\/$/)
-            Regexp.new /#{$1}/
-          else
-            begin
-              Kernel.const_get value
-            rescue
-              begin  
-                raise if value =~ /[a-z]/ and defined? value
-                eval(value) 
-              rescue Exception
-                value 
-              end
-            end
-          end
-        end.value
-      end
-    end
-
-    options
   end
 
 end

data/lib/rbbt/util/procpath.rb

@@ -0,0 +1,49 @@
+require 'rbbt/util/cmd'
+module ProcPath
+  CMD.tool :procpath do
+    'pip install procpath'
+  end
+
+  def self.record(pid, path, options = {})
+    IndiferentHash.setup(options)
+    options = Misc.add_defaults options, "interval" => 30
+
+    cmd_options = %w(interval recnum reevalnum).inject({}){|acc,k| acc[k] = options[k]; acc}
+
+    Log.debug "ProcPath recording #{pid} in #{path} (#{Misc.fingerprint options})"
+    procpath_thread = Thread.new do 
+      begin
+        procpath_pid = CMD.cmd_pid(:procpath, "record --database-file '#{path}' '$..children[?(@.stat.pid == #{pid})]'", cmd_options.merge(:nofail => true, :add_option_dashes => true))
+      rescue Exception
+        Log.exceptions $!
+        Process.kill "INT", procpath_pid
+      end
+    end
+
+    procpath_thread.report_on_exception = false
+
+    Process.wait pid.to_i
+    procpath_thread.raise Interrupt
+  end
+
+  def self.plot(path, output, options = {})
+    IndiferentHash.setup(options)
+    options = Misc.add_defaults options, "query-name" => 'rss', 'epsilon' => 0.5, "moving-average-window" => 10
+
+    cmd_options = %w(query-name epsilon monitor-average-window title logarithmic after before custom-query-file custom-value-expr).inject({}){|acc,k| acc[k] = options[k]; acc}
+    CMD.cmd_log(:procpath, "plot --database-file '#{path}' --plot-file '#{output}' ", cmd_options.merge(:nofail => true, :add_option_dashes => true))
+  end
+
+  def self.monitor(pid, path)
+    database, options_str = path.split("#")
+    options = options_str.nil? ? {} : Misc.string2hash(options_str)
+
+    database = File.expand_path database
+    Log.low "ProcPath monitor #{pid} in #{database} (#{Misc.fingerprint options})"
+
+    ProcPath.record(pid, database + '.sqlite3', options)
+    ProcPath.plot(database + '.sqlite3', database + '.cpu.svg', options.merge("query-name" => 'cpu'))
+    ProcPath.plot(database + '.sqlite3', database + '.rss.svg', options.merge("query-name" => 'rss'))
+  end
+end
+

data/lib/rbbt/workflow/step/accessor.rb

@@ -505,8 +505,8 @@ class Step
 
   def running? 
     return false if ! (started? || status == :ending)
-    pid = info[:pid]
-    return nil if pid.nil?
+    return nil unless Open.exist?(self.pid_file)
+    pid = Open.read(self.pid_file).to_i
 
     return false if done? or error? or aborted? 
 
@@ -530,8 +530,7 @@ class Step
   end
 
   def nopid?
-    pid = info[:pid] || Open.exists?(pid_file)
-    ! pid && ! (status.nil? || status == :aborted || status == :done || status == :error || status == :cleaned)
+    ! Open.exists?(pid_file) && ! (status.nil? || status == :aborted || status == :done || status == :error || status == :cleaned)
   end
 
   def aborted?

data/lib/rbbt/workflow/step/run.rb

@@ -373,7 +373,6 @@ class Step
                 Log.exception $!
               ensure
                 Step.purge_stream_cache
-                set_info :pid, nil
                 Open.rm pid_file if Open.exist?(pid_file)
               end
             end
@@ -388,7 +387,6 @@ class Step
                 _clean_finished
               rescue
                 stop_dependencies
-                set_info :pid, nil
                 Open.rm pid_file if Open.exist?(pid_file)
               end
             end
@@ -449,7 +447,7 @@ class Step
     ensure 
       no_load = false unless IO === result
       Open.rm pid_file if Open.exist?(pid_file) unless no_load
-      set_info :pid, nil unless no_load
+      #set_info :pid, nil unless no_load
     end
   end
 
@@ -559,7 +557,7 @@ class Step
           RbbtSemaphore.post_semaphore(semaphore) if semaphore
           Kernel.exit! -1
         end
-        set_info :pid, nil
+        #set_info :pid, nil
       ensure
         RbbtSemaphore.post_semaphore(semaphore) if semaphore
       end

data/lib/rbbt/workflow/usage.rb

@@ -57,7 +57,7 @@ module Task
       puts Log.color(:magenta, "Input select options")
       puts
       selects.collect{|p| p}.uniq.each do |input,options|
-        puts Log.color(:blue, input.to_s + ": ") << Misc.format_paragraph(options.collect{|o| o.to_s} * ", ") << "\n"
+        puts Log.color(:blue, input.to_s + ": ") << Misc.format_paragraph(options.collect{|o| Array === o ? o.first.to_s : o.to_s} * ", ") << "\n"
         puts unless Log.compact
       end
       puts

data/share/rbbt_commands/slurm/clean

@@ -0,0 +1,165 @@
+#!/usr/bin/env ruby
+
+require 'rbbt-util'
+require 'rbbt/util/simpleopt'
+
+#$0 = "rbbt #{$previous_commands*""} #{ File.basename(__FILE__) }" if $previous_commands
+
+options = SOPT.setup <<EOF
+
+Clean error or aborted jobs
+
+$ rbbt mnl [options] 
+
+-h--help Print this help
+-d--done Done jobs only
+-e--error Error jobs only
+-a--aborted SLURM aboted jobs
+-j--job* Job ids
+-s--search* Regular expression
+-t--tail* Show the last lines of the STDERR
+-SBP--sbatch_parameters show sbatch parameters
+-dr--dry_run Do not erase anything
+EOF
+
+if options[:help]
+ if defined? rbbt_usage
+  rbbt_usage 
+ else
+  puts SOPT.doc
+ end
+ exit 0
+end
+
+Log.severity = 4
+done, error, aborted, jobid, search, tail, sbatch_parameters, dry_run = options.values_at :done, :error, :aborted, :job, :search, :tail, :sbatch_parameters, :dry_run
+
+workdir = File.expand_path('~/rbbt-slurm')
+Path.setup(workdir)
+
+running_jobs = begin
+                squeue_txt = CMD.cmd('squeue').read
+                squeue_txt.split("\n").collect{|l| l.to_i.to_s}
+               rescue
+                Log.warn "Cannot determine if jobs are running, they will seem to be all alive (Job ID in green)"
+                squeue_txt = nil
+                $norunningjobs = true
+                []
+               end
+
+if squeue_txt
+ job_nodes = {}
+ squeue_txt.split("\n").each do |line|
+  parts = line.strip.split(/\s+/)
+  job_nodes[parts.first] = parts.last.split(",")
+ end
+else
+ job_nodes = nil
+end
+
+count = 0
+workdir.glob("**/command.slurm").sort_by{|f| File.mtime(f)}.each do |fcmd|
+ dir = File.dirname(fcmd)
+
+ if m = Open.read(fcmd).match(/#CMD: (.*)/)
+  cmd = m[1]
+ else
+  cmd = nil
+ end
+
+ if m = Open.read(fcmd).match(/# Run command\n(.*?)\n/im)
+  exe = m[1]
+ else
+  exe = nil
+ end
+
+ if m = Open.read(fcmd).match(/^CONTAINER_DIR=(.*)/)
+  container_home = m[1]
+ else
+  container_home = nil
+ end
+
+
+ if File.exists?(fid = File.join(dir, 'job.id'))
+  id = Open.read(fid).chomp
+ else
+  id = nil
+ end
+
+ if File.exists?(fstatus = File.join(dir, 'exit.status'))
+  exit_status = Open.read(fstatus).to_i
+ else
+  exit_status = nil
+ end
+
+ if File.exists?(fstatus = File.join(dir, 'job.status'))
+  nodes = Open.read(fstatus).split("\n").last.split(/\s+/).last.split(",")
+ elsif job_nodes[id]
+  nodes = job_nodes[id]
+ else
+  nodes = []
+ end
+
+ if File.exists?(File.join(dir, 'std.out'))
+  outt = File.mtime File.join(dir, 'std.out')
+  errt = File.mtime File.join(dir, 'std.err')
+  time_diff = Time.now - [outt, errt].max
+ end
+
+ fdep = File.join(dir, 'dependencies.list')
+ deps = Open.read(fdep).split("\n") if File.exists?(fdep)
+
+ fcadep = File.join(dir, 'canfail_dependencies.list')
+ cadeps = Open.read(fcadep).split("\n") if File.exists?(fcadep)
+
+ aborted = error = true if aborted.nil? && error.nil?
+ if done || error || aborted || running || queued || jobid || search
+   select = false
+   select = true if done && exit_status && exit_status.to_i == 0 
+   select = true if error && exit_status && exit_status.to_i != 0 
+   select = true if aborted && (exit_status.nil? && ! running_jobs.include?(id))
+   select = select && jobid.split(",").include?(id) if jobid 
+   select = select && cmd.match(/#{search}/) if search
+   next unless select 
+ end
+
+
+ puts Log.color(:yellow, "**ERASING**")
+ puts Log.color :blue, dir
+ puts Log.color(:magenta, "Creation: ") << File.mtime(File.join(dir, 'command.slurm')).to_s
+ puts Log.color(:magenta, "Done: ") << File.mtime(File.join(dir, 'exit.status')).to_s if File.exist?(File.join(dir, 'exit.status'))
+ puts Log.color(:magenta, "Exec: ") << (exe || "Missing")
+ puts Log.color(:magenta, "CMD: ") << (Log.color(:yellow, cmd) || "Missing")
+ puts Log.color(:magenta, "HOME: ") << Log.color(:yellow, container_home) if container_home
+ puts Log.color(:magenta, "Job ID: ") << (exit_status ? (exit_status == 0 ? Log.color(:green, "Done") : Log.color(:red, "Error")) + " (#{ id })" :  (running_jobs.include?(id) || $norunningjobs ? Log.color(:green, id) : Log.color(:red, id) ))
+ puts Log.color(:magenta, "Dependencies: ") << deps * ", " if deps
+ puts Log.color(:magenta, "Dependencies (can fail): ") << cadeps * ", " if cadeps
+ puts Log.color(:magenta, "Nodes: ") << nodes * ", "
+ puts Log.color(:magenta, "Output: ") << File.exists?(File.join(dir, 'std.out')).to_s << (id.nil? ? "" : " (last update " + Misc.format_seconds(time_diff) + " ago)")
+
+ if options[:sbatch_parameters]
+   puts Log.color(:magenta, "SBATCH parameters: ")
+   puts Log.color :blue, CMD.cmd('grep "^#SBATCH" |tail -n +6', :in => Open.read(fcmd)).read.strip
+ end
+
+ if tail && File.exists?(File.join(dir, 'std.err'))
+   if exit_status && exit_status != 0
+     puts Log.color(:magenta, "First error or exception found: ")
+     puts CMD.cmd("grep -i -w 'error\\|[a-z]*exception' #{File.join(dir, 'std.err')} -A #{tail.to_i} |head -n #{tail.to_i}", :no_fail => true).read
+   elsif exit_status
+     puts Log.color(:magenta, "Completed jobs: ")
+     puts CMD.cmd("grep -i -w 'Completed step' #{File.join(dir, 'std.err')} | grep -v 'Retrying dep.' | tail -n #{tail.to_i}", :no_fail => true).read
+   else
+     puts Log.color(:magenta, "Log tail: ")
+     puts CMD.cmd("tail -n #{tail.to_i} #{File.join(dir, 'std.err')}").read
+   end
+ end
+
+ count += 1
+
+ Open.rm_rf dir unless dry_run
+end
+
+puts 
+puts "Found #{count} jobs"
+

data/share/rbbt_commands/slurm/list

@@ -20,15 +20,18 @@ $ rbbt mnl [options]
 -j--job* Job ids
 -s--search* Regular expression
 -t--tail* Show the last lines of the STDERR
+-SBP--sbatch_parameters show sbatch parameters
+-PERF--procpath_performance show Procpath performance summary
+-sacct--sacct_peformance show sacct performance summary
 EOF
 
 if options[:help]
-  if defined? rbbt_usage
-    rbbt_usage 
-  else
-    puts SOPT.doc
-  end
-  exit 0
+ if defined? rbbt_usage
+  rbbt_usage 
+ else
+  puts SOPT.doc
+ end
+ exit 0
 end
 
 Log.severity = 4
@@ -38,101 +41,177 @@ workdir = File.expand_path('~/rbbt-slurm')
 Path.setup(workdir)
 
 running_jobs = begin
-                   CMD.cmd('squeue').read.split("\n").collect{|l| l.to_i.to_s}
+                squeue_txt = CMD.cmd('squeue').read
+                squeue_txt.split("\n").collect{|l| l.to_i.to_s}
                rescue
-                   Log.warn "Cannot determine if jobs are running, they will seem to be all alive (Job ID in green)"
-                   $norunningjobs = true
-                   []
+                Log.warn "Cannot determine if jobs are running, they will seem to be all alive (Job ID in green)"
+                squeue_txt = nil
+                $norunningjobs = true
+                []
                end
 
+if squeue_txt
+ job_nodes = {}
+ squeue_txt.split("\n").each do |line|
+  parts = line.strip.split(/\s+/)
+  job_nodes[parts.first] = parts.last.split(",")
+ end
+else
+ job_nodes = nil
+end
+
 count = 0
 workdir.glob("**/command.slurm").sort_by{|f| File.mtime(f)}.each do |fcmd|
-    dir = File.dirname(fcmd)
-
-    if m = Open.read(fcmd).match(/#CMD: (.*)/)
-        cmd = m[1]
-    else
-        cmd = nil
+ dir = File.dirname(fcmd)
+
+ if m = Open.read(fcmd).match(/#CMD: (.*)/)
+  cmd = m[1]
+ else
+  cmd = nil
+ end
+
+ if m = Open.read(fcmd).match(/# Run command\n(.*?)\n/im)
+  exe = m[1].sub('step_path=$(','')
+ else
+  exe = nil
+ end
+
+ if m = Open.read(fcmd).match(/^CONTAINER_DIR=(.*)/)
+  container_home = m[1]
+ else
+  container_home = nil
+ end
+
+
+ if File.exists?(fid = File.join(dir, 'job.id'))
+  id = Open.read(fid).chomp
+ else
+  id = nil
+ end
+
+ if File.exists?(fstatus = File.join(dir, 'exit.status'))
+  exit_status = Open.read(fstatus).to_i
+ else
+  exit_status = nil
+ end
+
+ if File.exists?(fstatus = File.join(dir, 'job.status'))
+  nodes = Open.read(fstatus).split("\n").last.split(/\s+/).last.split(",")
+ elsif job_nodes[id]
+  nodes = job_nodes[id]
+ else
+  nodes = []
+ end
+
+ if File.exists?(File.join(dir, 'std.out'))
+  outt = File.mtime File.join(dir, 'std.out')
+  errt = File.mtime File.join(dir, 'std.err')
+  time_diff = Time.now - [outt, errt].max
+ end
+
+ fdep = File.join(dir, 'dependencies.list')
+ deps = Open.read(fdep).split("\n") if File.exists?(fdep)
+
+ fcadep = File.join(dir, 'canfail_dependencies.list')
+ cadeps = Open.read(fcadep).split("\n") if File.exists?(fcadep)
+
+ if done || error || aborted || running || queued || jobid || search
+   select = false
+   select = true if done && exit_status == 0
+   select = true if error && exit_status && exit_status != 0 
+   select = true if aborted && (exit_status.nil? && ! running_jobs.include?(id))
+   select = true if queued && deps && (running_jobs & deps).any?
+   select = true if running && (exit_status.nil? && running_jobs.include?(id)) && (!deps || (running_jobs & deps).empty?)
+   select = true if jobid && jobid.split(",").include?(id)
+   select = true if search && cmd.match(/#{search}/)
+   next unless select 
+ end
+
+
+ puts Log.color :blue, dir
+ puts Log.color(:magenta, "Creation: ") << File.mtime(File.join(dir, 'command.slurm')).to_s
+ puts Log.color(:magenta, "Done: ") << File.mtime(File.join(dir, 'exit.status')).to_s if File.exist?(File.join(dir, 'exit.status'))
+ puts Log.color(:magenta, "Exec: ") << (exe || "Missing")
+ puts Log.color(:magenta, "CMD: ") << (Log.color(:yellow, cmd) || "Missing")
+ puts Log.color(:magenta, "HOME: ") << Log.color(:yellow, container_home) if container_home
+ puts Log.color(:magenta, "Job ID: ") << (exit_status ? (exit_status == 0 ? Log.color(:green, "Done") : Log.color(:red, "Error")) + " (#{ id })" :  (running_jobs.include?(id) || $norunningjobs ? Log.color(:green, id) : Log.color(:red, id) ))
+ puts Log.color(:magenta, "Dependencies: ") << deps * ", " if deps
+ puts Log.color(:magenta, "Dependencies (can fail): ") << cadeps * ", " if cadeps
+ puts Log.color(:magenta, "Nodes: ") << nodes * ", "
+ puts Log.color(:magenta, "Output: ") << File.exists?(File.join(dir, 'std.out')).to_s << (id.nil? ? "" : " (last update " + Misc.format_seconds(time_diff) + " ago)")
+
+ if options[:sbatch_parameters]
+   puts Log.color(:magenta, "SBATCH parameters: ")
+   text = CMD.cmd('grep "^#SBATCH" |tail -n +6', :in => Open.read(fcmd)).read.strip
+   lines = text.split("\n").collect{|line| header, _sep, value = line.partition(/\s+/); Log.color(:yellow, header + ": ") + value}
+   puts Log.color :yellow, lines * "\n"
+ end
+
+ fprocpath = File.join(dir, 'procpath.sqlite3')
+ if options[:procpath_performance]  && Open.exists?(fprocpath)
+   puts Log.color(:magenta, "Procpath summary: ")
+   require 'rbbt/tsv/csv'
+   meta = TSV.csv(CMD.cmd("sqlite3 -header -csv #{fprocpath} 'select * from meta;' "))
+   perf = TSV.csv(CMD.cmd("sqlite3 -header -csv #{fprocpath} 'select * from record;' "))
+
+   page_size = meta["page_size"].first.to_f
+   clock_ticks = meta["clock_ticks"].first.to_f
+
+   cpu_average = {}
+   rss_average = {}
+   perf.through :key, ["ts", 'stat_pid', "stat_utime", "stat_stime", "stat_cutime", "stat_cstime", "stat_rss"] do |k, values|
+    time, stat_pid, ucpu, scpu, ccpu, cscpu, rss = values
+    time = time.to_f
+
+    cpu = Misc.sum([ucpu, scpu].collect{|v| v.to_f})
+    cpu_average[stat_pid] ||= {}
+    cpu_average[stat_pid][time] ||= []
+    cpu_average[stat_pid][time] << cpu.to_f
+    rss_average[time] ||= []
+    rss_average[time] << rss.to_f * page_size
+   end
+
+   ticks = 0
+   cpu_average.each do |stat_pid, cpu_average_pid|
+    start = cpu_average_pid.keys.sort.first
+    eend = cpu_average_pid.keys.sort.last
+    ticks += Misc.sum(cpu_average_pid[eend]) - Misc.sum(cpu_average_pid[start])
+   end
+   start = rss_average.keys.sort.first
+   eend = rss_average.keys.sort.last
+   time_elapsed = eend - start
+   puts Log.color(:yellow, "CPU average: ") + "%.2f" % ( ticks / clock_ticks / time_elapsed * 100).to_s
+   puts Log.color(:yellow, "RSS average: ") + "%.2f GB" % Misc.mean(rss_average.collect{|t,l| Misc.sum(l) / (1024 * 1024 * 1024)}).to_s 
+
+ end
+
+ if options[:sacct_peformance]
+   begin
+    tsv = TSV.open(CMD.cmd("sacct -j #{id} -o 'jobid,AveRSS,MaxRSS,MaxDiskRead,MaxDiskWrite' -P|grep 'JobID\\|\.batch'"), :header_hash => '', :sep => "|", :type => :list)
+    values = tsv[tsv.keys.first]
+    if values.compact.any?
+     puts Log.color(:magenta, "SACCT performance: ")
+     puts values.zip(values.fields).collect{|v,t| Log.color(:yellow, t + ": ")  + v.to_s } * "\n"
     end
-
-    if m = Open.read(fcmd).match(/# Run command\n(.*?)\n/im)
-        exe = m[1]
-    else
-        exe = nil
-    end
-
-    if m = Open.read(fcmd).match(/^CONTAINER_DIR=(.*)/)
-        container_home = m[1]
-    else
-        container_home = nil
-    end
-
-
-    if File.exists?(fid = File.join(dir, 'job.id'))
-        id = Open.read(fid).chomp
-    else
-        id = nil
-    end
-
-    if File.exists?(fstatus = File.join(dir, 'exit.status'))
-        exit_status = Open.read(fstatus).to_i
-    else
-        exit_status = nil
-    end
-    
-    if File.exists?(fstatus = File.join(dir, 'job.status'))
-        nodes = Open.read(fstatus).split("\n").last.split(/\s+/).last.split(",")
-    else
-        nodes = []
-    end
-
-    if File.exists?(File.join(dir, 'std.out'))
-        outt = File.mtime File.join(dir, 'std.out')
-        errt = File.mtime File.join(dir, 'std.err')
-        time_diff = Time.now - [outt, errt].max
-    end
-
-    fdep = File.join(dir, 'dependencies.list')
-    deps = Open.read(fdep).split("\n") if File.exists?(fdep)
-
-    if done || error || aborted || running || queued || jobid || search
-      select = false
-      select = true if done && exit_status == 0
-      select = true if error && exit_status && exit_status != 0 
-      select = true if aborted && (exit_status.nil? && ! running_jobs.include?(id))
-      select = true if queued && deps && (running_jobs & deps).any?
-      select = true if running && (exit_status.nil? && running_jobs.include?(id)) && (!deps || (running_jobs & deps).empty?)
-      select = true if jobid && jobid.split(",").include?(id)
-      select = true if search && cmd.match(/#{search}/)
-      next unless select 
-    end
-
-
-    puts Log.color :blue, dir
-    puts Log.color(:magenta, "Creation: ") << File.mtime(File.join(dir, 'command.slurm')).to_s
-    puts Log.color(:magenta, "Done: ") << File.mtime(File.join(dir, 'exit.status')).to_s if File.exist?(File.join(dir, 'exit.status'))
-    puts Log.color(:magenta, "Exec: ") << (exe || "Missing")
-    puts Log.color(:magenta, "CMD: ") << (Log.color(:yellow, cmd) || "Missing")
-    puts Log.color(:magenta, "HOME: ") << Log.color(:yellow, container_home) if container_home
-    puts Log.color(:magenta, "Job ID: ") << (exit_status ? (exit_status == 0 ? Log.color(:green, "Done") : Log.color(:red, "Error")) :  (running_jobs.include?(id) || $norunningjobs ? Log.color(:green, id) : Log.color(:red, id) ))
-    puts Log.color(:magenta, "Dependencies: ") << deps * ", " if deps
-    puts Log.color(:magenta, "Nodes: ") << nodes * ", "
-    puts Log.color(:magenta, "Output: ") << File.exists?(File.join(dir, 'std.out')).to_s << (id.nil? ? "" : " (last update " + Misc.format_seconds(time_diff) + " ago)")
-
-    if tail && File.exists?(File.join(dir, 'std.err'))
-        if exit_status && exit_status != 0
-            puts Log.color(:magenta, "First error or exception found: ")
-            puts CMD.cmd("grep -i -w 'error\\|[a-z]*exception' #{File.join(dir, 'std.err')} -A #{tail.to_i} |head -n #{tail.to_i}", :no_fail => true).read
-        elsif exit_status
-            puts Log.color(:magenta, "Completed jobs: ")
-            puts CMD.cmd("grep -i -w 'Completed step' #{File.join(dir, 'std.err')} | grep -v 'Retrying dep.' | tail -n #{tail.to_i}", :no_fail => true).read
-        else
-            puts Log.color(:magenta, "Log tail: ")
-            puts CMD.cmd("tail -n #{tail.to_i} #{File.join(dir, 'std.err')}").read
-        end
-    end
-
-    count += 1
+   rescue
+   end
+ end
+
+
+ if tail && File.exists?(File.join(dir, 'std.err'))
+   if exit_status && exit_status != 0
+     puts Log.color(:magenta, "First error or exception found: ")
+     puts CMD.cmd("grep -i -w 'error\\|[a-z]*exception' #{File.join(dir, 'std.err')} -A #{tail.to_i} |head -n #{tail.to_i}", :no_fail => true).read
+   elsif exit_status
+     puts Log.color(:magenta, "Completed jobs: ")
+     puts CMD.cmd("grep -i -w 'Completed step' #{File.join(dir, 'std.err')} | grep -v 'Retrying dep.' | tail -n #{tail.to_i}", :no_fail => true).read
+   else
+     puts Log.color(:magenta, "Log tail: ")
+     puts CMD.cmd("tail -n #{tail.to_i} #{File.join(dir, 'std.err')}").read
+   end
+ end
+
+ count += 1
 
 end