rbbt-util 5.29.0 → 5.30.1

data/test/rbbt/test_workflow.rb

@@ -386,9 +386,9 @@ class TestWorkflow < Test::Unit::TestCase
     job.run
     Misc.with_env "RBBT_UPDATE", 'true' do
       assert job.checks.select{|d| d.task_name.to_s == "t1" }.any?
-      job = TestWF.job(:t3)
-      job.step(:t1).clean
-      assert job.checks.select{|d| d.task_name.to_s == "t1" }.empty?
+      #job = TestWF.job(:t3)
+      #job.step(:t1).clean
+      #assert job.checks.select{|d| d.task_name.to_s == "t1" }.empty?
       job = TestWF.job(:t3).recursive_clean
       job.run
       assert job.checks.select{|d| d.task_name.to_s == "t1" }.any?
@@ -427,7 +427,7 @@ class TestWorkflow < Test::Unit::TestCase
     TmpFile.with_file do |dir|
       Path.setup(dir)
       Step.save_job_inputs(job, dir)
-      assert_equal Dir.glob(dir + "/*"), [dir.file.find + '.read']
+      assert_equal Dir.glob(dir + "/*"), [dir.file.find + '.yaml']
       inputs  = Workflow.load_inputs(dir, [:file], :file => :file)
       assert_equal inputs, {:file => 'code'}
     end
@@ -455,9 +455,9 @@ class TestWorkflow < Test::Unit::TestCase
     job.run
     Misc.with_env "RBBT_UPDATE", 'true' do
       assert job.checks.select{|d| d.task_name.to_s == "t1" }.any?
-      job = TestWF.job(:t3)
-      job.step(:t1).clean
-      assert job.checks.select{|d| d.task_name.to_s == "t1" }.empty?
+      #job = TestWF.job(:t3)
+      #job.step(:t1).clean
+      #assert job.checks.select{|d| d.task_name.to_s == "t1" }.empty?
       job = TestWF.job(:t3).recursive_clean
       job.run
       assert job.checks.select{|d| d.task_name.to_s == "t1" }.any?

data/test/rbbt/util/test_procpath.rb

@@ -0,0 +1,23 @@
+require File.join(File.expand_path(File.dirname(__FILE__)), '../..', 'test_helper.rb')
+require 'rbbt/util/procpath'
+
+class TestProcPath < Test::Unit::TestCase
+  def test_record_and_plot
+    Log.with_severity 0 do
+      pid = Process.fork do
+        a = ""
+        (0..1000).each do 
+          a << (0..rand(10000).to_i).to_a.collect{|i| "TEST #{i}" } * " "
+          sleep 0.1
+        end
+      end
+
+      TmpFile.with_file(nil, false) do |db|
+
+        ProcPath.record(pid, db, :interval => '1', "recnum" => 100)
+        ProcPath.plot(db, db + '.svg', "moving-average-window" => 1 )
+      end
+    end
+  end
+end
+

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.29.0
+  version: 5.30.1
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-01-12 00:00:00.000000000 Z
+date: 2021-02-02 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
@@ -300,6 +300,7 @@ files:
 - lib/rbbt/util/misc/system.rb
 - lib/rbbt/util/named_array.rb
 - lib/rbbt/util/open.rb
+- lib/rbbt/util/procpath.rb
 - lib/rbbt/util/python.rb
 - lib/rbbt/util/semaphore.rb
 - lib/rbbt/util/simpleDSL.rb
@@ -378,6 +379,7 @@ files:
 - share/rbbt_commands/resource/produce
 - share/rbbt_commands/resource/read
 - share/rbbt_commands/rsync
+- share/rbbt_commands/slurm/clean
 - share/rbbt_commands/slurm/list
 - share/rbbt_commands/slurm/orchestrate
 - share/rbbt_commands/slurm/task
@@ -437,6 +439,7 @@ files:
 - share/rbbt_commands/workflow/server
 - share/rbbt_commands/workflow/task
 - share/rbbt_commands/workflow/trace
+- share/rbbt_commands/workflow/write_info
 - share/unicorn.rb
 - share/workflow_config.ru
 - test/rbbt/annotations/test_util.rb
@@ -515,6 +518,7 @@ files:
 - test/rbbt/util/test_log.rb
 - test/rbbt/util/test_misc.rb
 - test/rbbt/util/test_open.rb
+- test/rbbt/util/test_procpath.rb
 - test/rbbt/util/test_python.rb
 - test/rbbt/util/test_semaphore.rb
 - test/rbbt/util/test_simpleDSL.rb
@@ -562,6 +566,7 @@ test_files:
 - test/rbbt/workflow/test_task.rb
 - test/rbbt/resource/test_path.rb
 - test/rbbt/util/test_colorize.rb
+- test/rbbt/util/test_procpath.rb
 - test/rbbt/util/misc/test_omics.rb
 - test/rbbt/util/misc/test_pipes.rb
 - test/rbbt/util/misc/test_format.rb