rbbt-util 5.29.0 → 5.30.1

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@@ -386,9 +386,9 @@ class TestWorkflow < Test::Unit::TestCase
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  job.run
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  Misc.with_env "RBBT_UPDATE", 'true' do
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  assert job.checks.select{|d| d.task_name.to_s == "t1" }.any?
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- job = TestWF.job(:t3)
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- job.step(:t1).clean
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- assert job.checks.select{|d| d.task_name.to_s == "t1" }.empty?
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+ #job = TestWF.job(:t3)
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+ #job.step(:t1).clean
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+ #assert job.checks.select{|d| d.task_name.to_s == "t1" }.empty?
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  job = TestWF.job(:t3).recursive_clean
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  job.run
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  assert job.checks.select{|d| d.task_name.to_s == "t1" }.any?
@@ -427,7 +427,7 @@ class TestWorkflow < Test::Unit::TestCase
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  TmpFile.with_file do |dir|
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  Path.setup(dir)
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  Step.save_job_inputs(job, dir)
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- assert_equal Dir.glob(dir + "/*"), [dir.file.find + '.read']
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+ assert_equal Dir.glob(dir + "/*"), [dir.file.find + '.yaml']
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  inputs = Workflow.load_inputs(dir, [:file], :file => :file)
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  assert_equal inputs, {:file => 'code'}
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  end
@@ -455,9 +455,9 @@ class TestWorkflow < Test::Unit::TestCase
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  job.run
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  Misc.with_env "RBBT_UPDATE", 'true' do
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  assert job.checks.select{|d| d.task_name.to_s == "t1" }.any?
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- job = TestWF.job(:t3)
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- job.step(:t1).clean
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- assert job.checks.select{|d| d.task_name.to_s == "t1" }.empty?
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+ #job = TestWF.job(:t3)
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+ #job.step(:t1).clean
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+ #assert job.checks.select{|d| d.task_name.to_s == "t1" }.empty?
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  job = TestWF.job(:t3).recursive_clean
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  job.run
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  assert job.checks.select{|d| d.task_name.to_s == "t1" }.any?
@@ -0,0 +1,23 @@
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+ require File.join(File.expand_path(File.dirname(__FILE__)), '../..', 'test_helper.rb')
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+ require 'rbbt/util/procpath'
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+
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+ class TestProcPath < Test::Unit::TestCase
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+ def test_record_and_plot
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+ Log.with_severity 0 do
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+ pid = Process.fork do
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+ a = ""
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+ (0..1000).each do
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+ a << (0..rand(10000).to_i).to_a.collect{|i| "TEST #{i}" } * " "
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+ sleep 0.1
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+ end
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+ end
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+
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+ TmpFile.with_file(nil, false) do |db|
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+
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+ ProcPath.record(pid, db, :interval => '1', "recnum" => 100)
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+ ProcPath.plot(db, db + '.svg', "moving-average-window" => 1 )
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+ end
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+ end
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+ end
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+ end
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+
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: rbbt-util
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  version: !ruby/object:Gem::Version
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- version: 5.29.0
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+ version: 5.30.1
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  platform: ruby
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  authors:
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  - Miguel Vazquez
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2021-01-12 00:00:00.000000000 Z
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+ date: 2021-02-02 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rake
@@ -300,6 +300,7 @@ files:
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  - lib/rbbt/util/misc/system.rb
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  - lib/rbbt/util/named_array.rb
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  - lib/rbbt/util/open.rb
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+ - lib/rbbt/util/procpath.rb
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  - lib/rbbt/util/python.rb
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  - lib/rbbt/util/semaphore.rb
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  - lib/rbbt/util/simpleDSL.rb
@@ -378,6 +379,7 @@ files:
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  - share/rbbt_commands/resource/produce
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  - share/rbbt_commands/resource/read
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  - share/rbbt_commands/rsync
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+ - share/rbbt_commands/slurm/clean
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  - share/rbbt_commands/slurm/list
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  - share/rbbt_commands/slurm/orchestrate
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  - share/rbbt_commands/slurm/task
@@ -437,6 +439,7 @@ files:
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  - share/rbbt_commands/workflow/server
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  - share/rbbt_commands/workflow/task
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  - share/rbbt_commands/workflow/trace
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+ - share/rbbt_commands/workflow/write_info
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  - share/unicorn.rb
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  - share/workflow_config.ru
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  - test/rbbt/annotations/test_util.rb
@@ -515,6 +518,7 @@ files:
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  - test/rbbt/util/test_log.rb
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  - test/rbbt/util/test_misc.rb
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  - test/rbbt/util/test_open.rb
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+ - test/rbbt/util/test_procpath.rb
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  - test/rbbt/util/test_python.rb
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  - test/rbbt/util/test_semaphore.rb
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  - test/rbbt/util/test_simpleDSL.rb
@@ -562,6 +566,7 @@ test_files:
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  - test/rbbt/workflow/test_task.rb
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  - test/rbbt/resource/test_path.rb
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  - test/rbbt/util/test_colorize.rb
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+ - test/rbbt/util/test_procpath.rb
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  - test/rbbt/util/misc/test_omics.rb
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  - test/rbbt/util/misc/test_pipes.rb
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  - test/rbbt/util/misc/test_format.rb