rbbt-util 5.26.160 → 5.26.161

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: adda8bd909ff3122c4fe278d0daa4cd12ec9110a0cfcab28e3fa5a4aea33c32f
+SHA1:
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+  data.tar.gz: d8cd308c151efc36accc224ba7ccf15cc5472919
 SHA512:
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data/lib/rbbt/workflow/remote_workflow/driver/rest.rb

@@ -219,7 +219,7 @@ class RemoteWorkflow
     end
 
     def init_remote_tasks
-      task_exports = RemoteWorkflow::REST.get_json(url)
+      task_exports = IndiferentHash.setup(RemoteWorkflow::REST.get_json(url))
       @asynchronous_exports = (task_exports["asynchronous"] || []).collect{|task| task.to_sym }
       @synchronous_exports = (task_exports["synchronous"] || []).collect{|task| task.to_sym }
       @exec_exports = (task_exports["exec"] || []).collect{|task| task.to_sym }

data/lib/rbbt/workflow/remote_workflow/driver/ssh.rb

@@ -214,10 +214,6 @@ job.clean
       end
     end
 
-    def load_tasks
-      @task_info.keys.each{|name| tasks[name]}
-    end
-
     def task_dependencies
       @task_dependencies ||= Hash.new do |hash,task| 
         hash[task] = if exported_tasks.include? task

data/lib/rbbt/workflow/remote_workflow/driver.rb

@@ -72,4 +72,8 @@ class RemoteWorkflow
     new_params
   end
 
+  def load_tasks
+    (@asynchronous_exports + @synchronous_exports + @exec_exports).each{|name| tasks[name]}
+  end
+
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.26.160
+  version: 5.26.161
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2020-04-02 00:00:00.000000000 Z
+date: 2020-04-03 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
@@ -533,94 +533,95 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.0.6
+rubyforge_project: 
+rubygems_version: 2.5.2.3
 signing_key: 
 specification_version: 4
 summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
 test_files:
-- test/rbbt/test_entity.rb
-- test/rbbt/workflow/test_remote_workflow.rb
-- test/rbbt/workflow/test_doc.rb
-- test/rbbt/workflow/test_step.rb
-- test/rbbt/workflow/remote/test_client.rb
-- test/rbbt/workflow/step/test_dependencies.rb
-- test/rbbt/workflow/test_task.rb
-- test/rbbt/resource/test_path.rb
-- test/rbbt/util/test_colorize.rb
-- test/rbbt/util/misc/test_omics.rb
-- test/rbbt/util/misc/test_pipes.rb
-- test/rbbt/util/misc/test_lock.rb
+- test/rbbt/test_knowledge_base.rb
+- test/rbbt/association/test_item.rb
+- test/rbbt/association/test_index.rb
+- test/rbbt/association/test_open.rb
+- test/rbbt/association/test_util.rb
+- test/rbbt/association/test_database.rb
+- test/rbbt/test_association.rb
 - test/rbbt/util/misc/test_multipart_payload.rb
+- test/rbbt/util/misc/test_omics.rb
 - test/rbbt/util/misc/test_bgzf.rb
-- test/rbbt/util/test_concurrency.rb
-- test/rbbt/util/test_cmd.rb
-- test/rbbt/util/R/test_plot.rb
+- test/rbbt/util/misc/test_lock.rb
+- test/rbbt/util/misc/test_pipes.rb
+- test/rbbt/util/simpleopt/test_get.rb
+- test/rbbt/util/simpleopt/test_parse.rb
+- test/rbbt/util/simpleopt/test_setup.rb
+- test/rbbt/util/test_semaphore.rb
+- test/rbbt/util/test_config.rb
+- test/rbbt/util/test_R.rb
 - test/rbbt/util/R/test_eval.rb
 - test/rbbt/util/R/test_model.rb
-- test/rbbt/util/test_config.rb
+- test/rbbt/util/R/test_plot.rb
+- test/rbbt/util/test_excel2tsv.rb
+- test/rbbt/util/test_open.rb
+- test/rbbt/util/test_colorize.rb
+- test/rbbt/util/concurrency/processes/test_socket.rb
+- test/rbbt/util/concurrency/test_threads.rb
+- test/rbbt/util/concurrency/test_processes.rb
+- test/rbbt/util/test_cmd.rb
 - test/rbbt/util/test_log.rb
 - test/rbbt/util/test_simpleDSL.rb
 - test/rbbt/util/log/test_progress.rb
 - test/rbbt/util/test_tmpfile.rb
-- test/rbbt/util/test_R.rb
-- test/rbbt/util/test_excel2tsv.rb
 - test/rbbt/util/test_misc.rb
-- test/rbbt/util/test_open.rb
-- test/rbbt/util/test_simpleopt.rb
-- test/rbbt/util/simpleopt/test_parse.rb
-- test/rbbt/util/simpleopt/test_setup.rb
-- test/rbbt/util/simpleopt/test_get.rb
 - test/rbbt/util/test_python.rb
-- test/rbbt/util/test_filecache.rb
-- test/rbbt/util/concurrency/test_processes.rb
-- test/rbbt/util/concurrency/test_threads.rb
-- test/rbbt/util/concurrency/processes/test_socket.rb
-- test/rbbt/util/test_semaphore.rb
 - test/rbbt/util/test_chain_methods.rb
-- test/rbbt/test_resource.rb
-- test/rbbt/test_packed_index.rb
-- test/rbbt/tsv/test_change_id.rb
+- test/rbbt/util/test_concurrency.rb
+- test/rbbt/util/test_filecache.rb
+- test/rbbt/util/test_simpleopt.rb
+- test/rbbt/entity/test_identifiers.rb
+- test/rbbt/test_fix_width_table.rb
 - test/rbbt/tsv/test_attach.rb
-- test/rbbt/tsv/test_filter.rb
-- test/rbbt/tsv/test_parser.rb
-- test/rbbt/tsv/test_accessor.rb
-- test/rbbt/tsv/test_matrix.rb
-- test/rbbt/tsv/test_field_index.rb
-- test/rbbt/tsv/test_util.rb
-- test/rbbt/tsv/test_index.rb
-- test/rbbt/tsv/test_parallel.rb
-- test/rbbt/tsv/test_manipulate.rb
+- test/rbbt/tsv/test_stream.rb
 - test/rbbt/tsv/test_excel.rb
 - test/rbbt/tsv/parallel/test_through.rb
 - test/rbbt/tsv/parallel/test_traverse.rb
-- test/rbbt/tsv/test_stream.rb
-- test/rbbt/test_association.rb
-- test/rbbt/association/test_database.rb
-- test/rbbt/association/test_item.rb
-- test/rbbt/association/test_open.rb
-- test/rbbt/association/test_util.rb
-- test/rbbt/association/test_index.rb
-- test/rbbt/test_knowledge_base.rb
-- test/rbbt/persist/tsv/test_kyotocabinet.rb
-- test/rbbt/persist/tsv/test_cdb.rb
-- test/rbbt/persist/tsv/test_lmdb.rb
-- test/rbbt/persist/tsv/test_sharder.rb
-- test/rbbt/persist/tsv/test_leveldb.rb
-- test/rbbt/persist/tsv/test_tokyocabinet.rb
-- test/rbbt/persist/test_tsv.rb
-- test/rbbt/test_tsv.rb
-- test/rbbt/test_annotations.rb
-- test/rbbt/test_fix_width_table.rb
+- test/rbbt/tsv/test_index.rb
+- test/rbbt/tsv/test_matrix.rb
+- test/rbbt/tsv/test_parallel.rb
+- test/rbbt/tsv/test_util.rb
+- test/rbbt/tsv/test_accessor.rb
+- test/rbbt/tsv/test_field_index.rb
+- test/rbbt/tsv/test_manipulate.rb
+- test/rbbt/tsv/test_change_id.rb
+- test/rbbt/tsv/test_filter.rb
+- test/rbbt/tsv/test_parser.rb
 - test/rbbt/test_workflow.rb
-- test/rbbt/entity/test_identifiers.rb
-- test/rbbt/annotations/test_util.rb
-- test/rbbt/test_hpc.rb
-- test/rbbt/test_monitor.rb
+- test/rbbt/test_packed_index.rb
+- test/rbbt/test_annotations.rb
 - test/rbbt/test_persist.rb
-- test/rbbt/knowledge_base/test_entity.rb
-- test/rbbt/knowledge_base/test_registry.rb
+- test/rbbt/annotations/test_util.rb
+- test/rbbt/workflow/test_doc.rb
+- test/rbbt/workflow/test_remote_workflow.rb
+- test/rbbt/workflow/test_step.rb
+- test/rbbt/workflow/step/test_dependencies.rb
+- test/rbbt/workflow/test_task.rb
+- test/rbbt/workflow/remote/test_client.rb
 - test/rbbt/knowledge_base/test_syndicate.rb
-- test/rbbt/knowledge_base/test_query.rb
 - test/rbbt/knowledge_base/test_enrichment.rb
+- test/rbbt/knowledge_base/test_query.rb
 - test/rbbt/knowledge_base/test_traverse.rb
+- test/rbbt/knowledge_base/test_entity.rb
+- test/rbbt/knowledge_base/test_registry.rb
+- test/rbbt/test_resource.rb
+- test/rbbt/test_tsv.rb
+- test/rbbt/test_hpc.rb
+- test/rbbt/resource/test_path.rb
+- test/rbbt/test_entity.rb
+- test/rbbt/test_monitor.rb
+- test/rbbt/persist/tsv/test_tokyocabinet.rb
+- test/rbbt/persist/tsv/test_leveldb.rb
+- test/rbbt/persist/tsv/test_lmdb.rb
+- test/rbbt/persist/tsv/test_kyotocabinet.rb
+- test/rbbt/persist/tsv/test_cdb.rb
+- test/rbbt/persist/tsv/test_sharder.rb
+- test/rbbt/persist/test_tsv.rb
 - test/test_helper.rb