rbbt-util 5.25.29 → 5.25.30
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/lib/rbbt/util/concurrency/processes/worker.rb +6 -4
- metadata +65 -65
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: cce0e55e8bc170d53bbf07b0738a98b0312aed0d
|
4
|
+
data.tar.gz: 525a2fcc360f03ebb4278678105b3e333979bd05
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 4293e568f104ca11bd0c1d9a3145b2bb9e3a199891b142ccb61d7067f7c6f38f5a8cf78fd3ebdb58b5b73c2a33eac9140bdf73fe159e69bbaa8b1c489c526402
|
7
|
+
data.tar.gz: 0ea18d479d5e4ef308fdc9143577eda23c82c578f7b5d1599b1f318acc9e8b86bcb9ad6e0af75de3ddfd1f7e670caac152d1ca7a79ed5bcb483d1254436f8ad2
|
@@ -10,6 +10,8 @@ class RbbtProcessQueue
|
|
10
10
|
end
|
11
11
|
end
|
12
12
|
|
13
|
+
WORKER_ABORT_SIGNAL=15
|
14
|
+
|
13
15
|
def run
|
14
16
|
begin
|
15
17
|
begin
|
@@ -27,7 +29,7 @@ class RbbtProcessQueue
|
|
27
29
|
@stop = true
|
28
30
|
}
|
29
31
|
|
30
|
-
Signal.trap(
|
32
|
+
Signal.trap(WORKER_ABORT_SIGNAL){
|
31
33
|
Log.high "Worker #{Process.pid} signaled to abort"
|
32
34
|
Kernel.exit! -1
|
33
35
|
}
|
@@ -144,10 +146,10 @@ class RbbtProcessQueue
|
|
144
146
|
end
|
145
147
|
}
|
146
148
|
|
147
|
-
Signal.trap(
|
149
|
+
Signal.trap(WORKER_ABORT_SIGNAL){
|
148
150
|
Log.high "Killing respawned process #{@current}"
|
149
151
|
begin
|
150
|
-
Process.kill
|
152
|
+
Process.kill WORKER_ABORT_SIGNAL, @current if @current
|
151
153
|
rescue Errno::ESRCH, Errno::ECHILD
|
152
154
|
end
|
153
155
|
}
|
@@ -237,7 +239,7 @@ class RbbtProcessQueue
|
|
237
239
|
|
238
240
|
def abort
|
239
241
|
begin
|
240
|
-
Process.kill
|
242
|
+
Process.kill WORKER_ABORT_SIGNAL, @pid
|
241
243
|
rescue Errno::ESRCH, Errno::ECHILD
|
242
244
|
end
|
243
245
|
end
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: rbbt-util
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 5.25.
|
4
|
+
version: 5.25.30
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Miguel Vazquez
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2019-
|
11
|
+
date: 2019-03-01 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rake
|
@@ -511,90 +511,90 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
511
511
|
version: '0'
|
512
512
|
requirements: []
|
513
513
|
rubyforge_project:
|
514
|
-
rubygems_version: 2.
|
514
|
+
rubygems_version: 2.5.2.3
|
515
515
|
signing_key:
|
516
516
|
specification_version: 4
|
517
517
|
summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
|
518
518
|
test_files:
|
519
|
-
- test/rbbt/
|
520
|
-
- test/rbbt/
|
521
|
-
- test/rbbt/
|
522
|
-
- test/rbbt/
|
523
|
-
- test/rbbt/
|
524
|
-
- test/rbbt/
|
525
|
-
- test/rbbt/
|
526
|
-
- test/rbbt/util/misc/test_omics.rb
|
527
|
-
- test/rbbt/util/misc/test_pipes.rb
|
528
|
-
- test/rbbt/util/misc/test_lock.rb
|
519
|
+
- test/rbbt/test_knowledge_base.rb
|
520
|
+
- test/rbbt/association/test_item.rb
|
521
|
+
- test/rbbt/association/test_index.rb
|
522
|
+
- test/rbbt/association/test_open.rb
|
523
|
+
- test/rbbt/association/test_util.rb
|
524
|
+
- test/rbbt/association/test_database.rb
|
525
|
+
- test/rbbt/test_association.rb
|
529
526
|
- test/rbbt/util/misc/test_multipart_payload.rb
|
527
|
+
- test/rbbt/util/misc/test_omics.rb
|
530
528
|
- test/rbbt/util/misc/test_bgzf.rb
|
531
|
-
- test/rbbt/util/
|
532
|
-
- test/rbbt/util/
|
533
|
-
- test/rbbt/util/
|
529
|
+
- test/rbbt/util/misc/test_lock.rb
|
530
|
+
- test/rbbt/util/misc/test_pipes.rb
|
531
|
+
- test/rbbt/util/simpleopt/test_get.rb
|
532
|
+
- test/rbbt/util/simpleopt/test_parse.rb
|
533
|
+
- test/rbbt/util/simpleopt/test_setup.rb
|
534
|
+
- test/rbbt/util/test_semaphore.rb
|
535
|
+
- test/rbbt/util/test_config.rb
|
536
|
+
- test/rbbt/util/test_R.rb
|
534
537
|
- test/rbbt/util/R/test_eval.rb
|
535
538
|
- test/rbbt/util/R/test_model.rb
|
536
|
-
- test/rbbt/util/
|
539
|
+
- test/rbbt/util/R/test_plot.rb
|
540
|
+
- test/rbbt/util/test_excel2tsv.rb
|
541
|
+
- test/rbbt/util/test_open.rb
|
542
|
+
- test/rbbt/util/test_colorize.rb
|
543
|
+
- test/rbbt/util/concurrency/processes/test_socket.rb
|
544
|
+
- test/rbbt/util/concurrency/test_threads.rb
|
545
|
+
- test/rbbt/util/concurrency/test_processes.rb
|
546
|
+
- test/rbbt/util/test_cmd.rb
|
537
547
|
- test/rbbt/util/test_log.rb
|
538
548
|
- test/rbbt/util/test_simpleDSL.rb
|
539
549
|
- test/rbbt/util/log/test_progress.rb
|
540
550
|
- test/rbbt/util/test_tmpfile.rb
|
541
|
-
- test/rbbt/util/test_R.rb
|
542
|
-
- test/rbbt/util/test_excel2tsv.rb
|
543
551
|
- test/rbbt/util/test_misc.rb
|
544
|
-
- test/rbbt/util/test_open.rb
|
545
|
-
- test/rbbt/util/test_simpleopt.rb
|
546
|
-
- test/rbbt/util/simpleopt/test_parse.rb
|
547
|
-
- test/rbbt/util/simpleopt/test_setup.rb
|
548
|
-
- test/rbbt/util/simpleopt/test_get.rb
|
549
|
-
- test/rbbt/util/test_filecache.rb
|
550
|
-
- test/rbbt/util/concurrency/test_processes.rb
|
551
|
-
- test/rbbt/util/concurrency/test_threads.rb
|
552
|
-
- test/rbbt/util/concurrency/processes/test_socket.rb
|
553
|
-
- test/rbbt/util/test_semaphore.rb
|
554
552
|
- test/rbbt/util/test_chain_methods.rb
|
555
|
-
- test/rbbt/
|
556
|
-
- test/rbbt/
|
557
|
-
- test/rbbt/
|
553
|
+
- test/rbbt/util/test_concurrency.rb
|
554
|
+
- test/rbbt/util/test_filecache.rb
|
555
|
+
- test/rbbt/util/test_simpleopt.rb
|
556
|
+
- test/rbbt/entity/test_identifiers.rb
|
557
|
+
- test/rbbt/test_fix_width_table.rb
|
558
558
|
- test/rbbt/tsv/test_attach.rb
|
559
|
-
- test/rbbt/tsv/
|
560
|
-
- test/rbbt/tsv/test_parser.rb
|
561
|
-
- test/rbbt/tsv/test_accessor.rb
|
562
|
-
- test/rbbt/tsv/test_matrix.rb
|
563
|
-
- test/rbbt/tsv/test_field_index.rb
|
564
|
-
- test/rbbt/tsv/test_util.rb
|
565
|
-
- test/rbbt/tsv/test_index.rb
|
566
|
-
- test/rbbt/tsv/test_parallel.rb
|
567
|
-
- test/rbbt/tsv/test_manipulate.rb
|
559
|
+
- test/rbbt/tsv/test_stream.rb
|
568
560
|
- test/rbbt/tsv/test_excel.rb
|
569
561
|
- test/rbbt/tsv/parallel/test_through.rb
|
570
562
|
- test/rbbt/tsv/parallel/test_traverse.rb
|
571
|
-
- test/rbbt/tsv/
|
572
|
-
- test/rbbt/
|
573
|
-
- test/rbbt/
|
574
|
-
- test/rbbt/
|
575
|
-
- test/rbbt/
|
576
|
-
- test/rbbt/
|
577
|
-
- test/rbbt/
|
578
|
-
- test/rbbt/
|
579
|
-
- test/rbbt/
|
580
|
-
- test/rbbt/
|
581
|
-
- test/rbbt/persist/tsv/test_lmdb.rb
|
582
|
-
- test/rbbt/persist/tsv/test_sharder.rb
|
583
|
-
- test/rbbt/persist/tsv/test_leveldb.rb
|
584
|
-
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
585
|
-
- test/rbbt/persist/test_tsv.rb
|
586
|
-
- test/rbbt/test_tsv.rb
|
587
|
-
- test/rbbt/test_annotations.rb
|
588
|
-
- test/rbbt/test_fix_width_table.rb
|
563
|
+
- test/rbbt/tsv/test_index.rb
|
564
|
+
- test/rbbt/tsv/test_matrix.rb
|
565
|
+
- test/rbbt/tsv/test_parallel.rb
|
566
|
+
- test/rbbt/tsv/test_util.rb
|
567
|
+
- test/rbbt/tsv/test_accessor.rb
|
568
|
+
- test/rbbt/tsv/test_field_index.rb
|
569
|
+
- test/rbbt/tsv/test_manipulate.rb
|
570
|
+
- test/rbbt/tsv/test_change_id.rb
|
571
|
+
- test/rbbt/tsv/test_filter.rb
|
572
|
+
- test/rbbt/tsv/test_parser.rb
|
589
573
|
- test/rbbt/test_workflow.rb
|
590
|
-
- test/rbbt/
|
591
|
-
- test/rbbt/
|
592
|
-
- test/rbbt/test_monitor.rb
|
574
|
+
- test/rbbt/test_packed_index.rb
|
575
|
+
- test/rbbt/test_annotations.rb
|
593
576
|
- test/rbbt/test_persist.rb
|
594
|
-
- test/rbbt/
|
595
|
-
- test/rbbt/
|
577
|
+
- test/rbbt/annotations/test_util.rb
|
578
|
+
- test/rbbt/workflow/test_doc.rb
|
579
|
+
- test/rbbt/workflow/test_step.rb
|
580
|
+
- test/rbbt/workflow/step/test_dependencies.rb
|
581
|
+
- test/rbbt/workflow/test_task.rb
|
596
582
|
- test/rbbt/knowledge_base/test_syndicate.rb
|
597
|
-
- test/rbbt/knowledge_base/test_query.rb
|
598
583
|
- test/rbbt/knowledge_base/test_enrichment.rb
|
584
|
+
- test/rbbt/knowledge_base/test_query.rb
|
599
585
|
- test/rbbt/knowledge_base/test_traverse.rb
|
586
|
+
- test/rbbt/knowledge_base/test_entity.rb
|
587
|
+
- test/rbbt/knowledge_base/test_registry.rb
|
588
|
+
- test/rbbt/test_resource.rb
|
589
|
+
- test/rbbt/test_tsv.rb
|
590
|
+
- test/rbbt/resource/test_path.rb
|
591
|
+
- test/rbbt/test_entity.rb
|
592
|
+
- test/rbbt/test_monitor.rb
|
593
|
+
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
594
|
+
- test/rbbt/persist/tsv/test_leveldb.rb
|
595
|
+
- test/rbbt/persist/tsv/test_lmdb.rb
|
596
|
+
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
597
|
+
- test/rbbt/persist/tsv/test_cdb.rb
|
598
|
+
- test/rbbt/persist/tsv/test_sharder.rb
|
599
|
+
- test/rbbt/persist/test_tsv.rb
|
600
600
|
- test/test_helper.rb
|