rbbt-util 5.23.30 → 5.23.31

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: 2317148b52eecea200d1f7579d0094dbfbd553e0
+  metadata.gz: 109bb2daf8846d12be60271835c62b41d57000ef
+  data.tar.gz: 73fc3ca6821a320f3b8e6ff8e557aa3265183383
 SHA512:
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-  data.tar.gz: c99ea47d4bd81b6c52f1e18d08eccc909e05018dcaa2539362e98277960ed4cb42b7f40b63c71a3d72f096bdc0527f3cd9241af4313d13cf18a7fa026464cce5
+  metadata.gz: 0dddc6c05a96c78ea6fdb696e5a46c3ce4e29a02867c2a58f7d8751f34da99cfc40051ad3564bcf5d910929c9b61ae9dd3f65a13d14020793cc049d97e39f8b0
+  data.tar.gz: 71c62ea2ef84428217180c01ea7b5b8c4207e3475cfad5f6deefee636c332cb82e05aa02c85de7ec496b8d179feedd634c9bf55fb61bfbf656527f7e7f7515a8

data/lib/rbbt/util/misc/format.rb

@@ -41,6 +41,7 @@ module Misc
                   line << word << " "
                   word = words.shift
                 end
+                offset = 0
                 lines << ((" " * indent) << line[0..-2])
                 line = ""
               end

data/lib/rbbt/util/simpleopt/doc.rb

@@ -40,7 +40,8 @@ module SOPT
     else
       "=<#{ type }>"
     end
-    extra << " (default: #{Array === default ? (default.length > 3 ? default[0..2]*", " + ', ...' : default*", " ): default})" if default != nil
+    #extra << " (default: #{Array === default ? (default.length > 3 ? default[0..2]*", " + ', ...' : default*", " ): default})" if default != nil
+    extra << " (default: #{Misc.fingerprint(default)})" if default != nil
     input_str << Log.color(:green, extra)
   end
 

data/lib/rbbt/workflow/accessor.rb

@@ -391,7 +391,7 @@ class Step
       (defined?(WorkflowRESTClient) && WorkflowRESTClient::RemoteStep === dep) || 
         ! Open.exists?(dep.info_file) ||
         (dep.path && (Open.exists?(dep.path) || Open.remote?(dep.path))) || 
-        ((dep.error? || dep.aborted?) && (! dep.recoverable_error? || canfail_paths.include?(dep.path)))
+        ((dep.error? || dep.aborted? || dep.waiting?) && (! dep.recoverable_error? || canfail_paths.include?(dep.path)))
     }
   end
 

data/lib/rbbt/workflow/archive.rb

@@ -6,7 +6,9 @@ class Step
     task = File.basename(File.dirname(path)) if task.nil?
     workflow = File.basename(File.dirname(File.dirname(path))) if workflow.nil?
 
-    FileUtils.mkdir_p target_dir[workflow][task]
+    return if target_dir[workflow][task][name].exists? || File.symlink?(target_dir[workflow][task][name].find)
+    Log.debug "Linking #{ path }"
+    FileUtils.mkdir_p target_dir[workflow][task] unless target_dir[workflow][task].exists?
     FileUtils.ln_s path, target_dir[workflow][task][name].find
     FileUtils.ln_s path + '.files', target_dir[workflow][task][name].find + '.files' if File.exists?(path + '.files')
     FileUtils.ln_s path + '.info', target_dir[workflow][task][name].find + '.info' if File.exists?(path + '.info')

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.23.30
+  version: 5.23.31
 platform: ruby
 authors:
 - Miguel Vazquez