rbbt-util 5.21.5 → 5.21.6
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- checksums.yaml +4 -4
- data/lib/rbbt/entity/identifiers.rb +0 -2
- data/lib/rbbt/rest/client/get.rb +14 -0
- data/lib/rbbt/rest/client/step.rb +32 -17
- data/lib/rbbt/tsv/util.rb +2 -0
- data/lib/rbbt/workflow/accessor.rb +30 -6
- data/lib/rbbt/workflow/step/dependencies.rb +18 -7
- data/lib/rbbt/workflow/step/run.rb +4 -5
- data/share/config.ru +3 -0
- data/share/rbbt_commands/system/clean +2 -1
- data/share/rbbt_commands/workflow/info +1 -1
- data/share/rbbt_commands/workflow/prov +1 -1
- metadata +63 -63
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: '08fc0e36be76ddc12da08a71a3866246380800e5'
|
4
|
+
data.tar.gz: 7e146e65ad2c37c8563b9d09b4d05f64f2cf467a
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 83141c8792d440fd891dd6a8ced6328cf92bd253545e8722c8cfc622a46071095b13a6eed0ce163f863aa5c8f09a3d1ba5e82c47b33f594dd5b692f3a58f6a6a
|
7
|
+
data.tar.gz: b2e711647c50de9ea09686872a35f23be5cb82fe1801b6b97942d2ad0cab0a17aa96dbf2e65d4f836d860438c6b892217a01e0b669bb2afd7f2848c6880ecd9e
|
data/lib/rbbt/rest/client/get.rb
CHANGED
@@ -53,6 +53,20 @@ class WorkflowRESTClient
|
|
53
53
|
new_params
|
54
54
|
end
|
55
55
|
|
56
|
+
def self.clean_url(url, params = {})
|
57
|
+
params = params.merge({ :_format => 'json', :update => 'clean' })
|
58
|
+
params = fix_params params
|
59
|
+
res = capture_exception do
|
60
|
+
Misc.insist(2, 0.5) do
|
61
|
+
Log.debug{ "RestClient clean: #{ url } - #{Misc.fingerprint params}" }
|
62
|
+
res = RestClient.get(URI.encode(url), :params => params)
|
63
|
+
raise TryAgain if res.code == 202
|
64
|
+
res
|
65
|
+
end
|
66
|
+
end
|
67
|
+
res
|
68
|
+
end
|
69
|
+
|
56
70
|
def self.get_raw(url, params = {})
|
57
71
|
params = params.merge({ :_format => 'raw' })
|
58
72
|
params = fix_params params
|
@@ -38,12 +38,6 @@ class WorkflowRESTClient
|
|
38
38
|
exec(no_load)
|
39
39
|
elsif no_load == :stream
|
40
40
|
_run_job(:stream)
|
41
|
-
#init_job
|
42
|
-
#join
|
43
|
-
#Misc.open_pipe do |sin|
|
44
|
-
# body = get.body
|
45
|
-
# sin.write body
|
46
|
-
#end
|
47
41
|
elsif no_load
|
48
42
|
init_job
|
49
43
|
nil
|
@@ -95,7 +89,20 @@ class WorkflowRESTClient
|
|
95
89
|
end
|
96
90
|
|
97
91
|
def abort
|
92
|
+
return self if status == :done
|
98
93
|
WorkflowRESTClient.get_json(@url + '?_update=abort') if @url and @name
|
94
|
+
self
|
95
|
+
end
|
96
|
+
|
97
|
+
def dup_inputs
|
98
|
+
return if @dupped or ENV["RBBT_NO_STREAM"] == 'true'
|
99
|
+
Log.low "Dupping inputs for #{path}"
|
100
|
+
dupped_inputs = {}
|
101
|
+
@inputs.collect do |k,input|
|
102
|
+
dupped_inputs[k] = Step.dup_stream input
|
103
|
+
end
|
104
|
+
@inputs = dupped_inputs
|
105
|
+
@dupped = true
|
99
106
|
end
|
100
107
|
|
101
108
|
def name
|
@@ -113,12 +120,20 @@ class WorkflowRESTClient
|
|
113
120
|
init_job
|
114
121
|
(Array === @url ? @url.first : @url).split("/")[-2]
|
115
122
|
end
|
123
|
+
|
124
|
+
def nopid?
|
125
|
+
false
|
126
|
+
end
|
116
127
|
|
117
128
|
def info(check_lock=false)
|
118
129
|
@done = @info && @info[:status] && @info[:status].to_sym == :done
|
119
130
|
@info = Persist.memory("RemoteSteps Info", :url => @url, :persist => true, :update => !@done) do
|
120
131
|
init_job unless @url
|
121
|
-
info =
|
132
|
+
info = begin
|
133
|
+
WorkflowRESTClient.get_json(File.join(@url, 'info'))
|
134
|
+
rescue
|
135
|
+
{}
|
136
|
+
end
|
122
137
|
info = WorkflowRESTClient.fix_hash(info)
|
123
138
|
info[:status] = info[:status].to_sym if String === info[:status]
|
124
139
|
info
|
@@ -185,7 +200,7 @@ class WorkflowRESTClient
|
|
185
200
|
WorkflowRESTClient.post_jobname(File.join(base_url, task.to_s), inputs.merge(other_params).merge(:jobname => @name||@base_name, :_cache_type => cache_type))
|
186
201
|
end
|
187
202
|
@url = File.join(base_url, task.to_s, @name)
|
188
|
-
|
203
|
+
self
|
189
204
|
end
|
190
205
|
|
191
206
|
|
@@ -201,7 +216,7 @@ class WorkflowRESTClient
|
|
201
216
|
if @url
|
202
217
|
@url + '?_format=raw'
|
203
218
|
else
|
204
|
-
[base_url, task, Misc.fingerprint(inputs)] * "/"
|
219
|
+
[base_url, task, @base_name + '-' + Misc.fingerprint(inputs)] * "/"
|
205
220
|
end
|
206
221
|
end
|
207
222
|
|
@@ -225,12 +240,12 @@ class WorkflowRESTClient
|
|
225
240
|
Misc.consume_stream(res, true)
|
226
241
|
end
|
227
242
|
|
228
|
-
if not self.done?
|
243
|
+
if not (self.done? || self.aborted? || self.error?)
|
229
244
|
self.info
|
230
|
-
return self if self.done?
|
231
|
-
sleep 0.2 unless self.done?
|
232
|
-
sleep 1 unless self.done?
|
233
|
-
while not self.done?
|
245
|
+
return self if self.done? || self.aborted? || self.error?
|
246
|
+
sleep 0.2 unless self.done? || self.aborted? || self.error?
|
247
|
+
sleep 1 unless self.done? || self.aborted? || self.error?
|
248
|
+
while not (self.done? || self.aborted? || self.error?)
|
234
249
|
sleep 3
|
235
250
|
end
|
236
251
|
end
|
@@ -283,6 +298,7 @@ class WorkflowRESTClient
|
|
283
298
|
def load
|
284
299
|
params = {}
|
285
300
|
join unless done? or streaming?
|
301
|
+
raise get_exception if error? or aborted?
|
286
302
|
load_res get
|
287
303
|
end
|
288
304
|
|
@@ -295,6 +311,7 @@ class WorkflowRESTClient
|
|
295
311
|
@done = nil
|
296
312
|
@name = nil
|
297
313
|
@started = nil
|
314
|
+
@aborted = nil
|
298
315
|
new_inputs = {}
|
299
316
|
inputs.each do |k,i|
|
300
317
|
if File === i
|
@@ -320,11 +337,9 @@ class WorkflowRESTClient
|
|
320
337
|
end
|
321
338
|
|
322
339
|
def clean
|
323
|
-
return
|
324
340
|
begin
|
325
341
|
params = {:_update => :clean}
|
326
|
-
|
327
|
-
WorkflowRESTClient.get_raw(url, params)
|
342
|
+
WorkflowRESTClient.clean_url(url, params) if @url
|
328
343
|
_restart
|
329
344
|
rescue Exception
|
330
345
|
Log.exception $!
|
data/lib/rbbt/tsv/util.rb
CHANGED
@@ -141,7 +141,7 @@ class Step
|
|
141
141
|
def init_info
|
142
142
|
return nil if @exec or info_file.nil?
|
143
143
|
Open.lock(info_file, :lock => info_lock) do
|
144
|
-
i = {:status => :init}
|
144
|
+
i = {:status => :init, :pid => Process.pid}
|
145
145
|
@info_cache = i
|
146
146
|
Misc.sensiblewrite(info_file, INFO_SERIALIAZER.dump(i), :force => true, :lock => false)
|
147
147
|
@info_cache_time = Time.now
|
@@ -315,6 +315,25 @@ class Step
|
|
315
315
|
self._abort
|
316
316
|
end
|
317
317
|
|
318
|
+
def get_exception
|
319
|
+
if info[:exception].nil?
|
320
|
+
raise Aborted if aborted?
|
321
|
+
raise messages.last if error?
|
322
|
+
return false
|
323
|
+
else
|
324
|
+
ex_class, ex_message, ex_backtrace = info[:exception].values_at :class, :message, :backtrace
|
325
|
+
begin
|
326
|
+
klass = Kernel.const_get(ex_class)
|
327
|
+
ex = klass.new ex_message
|
328
|
+
#ex.set_backtrace ex_backtrace
|
329
|
+
ex
|
330
|
+
rescue
|
331
|
+
Log.exception $!
|
332
|
+
raise ex_message
|
333
|
+
end
|
334
|
+
end
|
335
|
+
end
|
336
|
+
|
318
337
|
def recoverable_error?
|
319
338
|
return true if aborted?
|
320
339
|
return false unless error?
|
@@ -327,7 +346,7 @@ class Step
|
|
327
346
|
end
|
328
347
|
|
329
348
|
def started?
|
330
|
-
Open.exists?(path) or Open.exists?(pid_file)
|
349
|
+
Open.exists?(path) or Open.exists?(pid_file) or Open.exists?(info_file)
|
331
350
|
end
|
332
351
|
|
333
352
|
def dirty?
|
@@ -342,11 +361,11 @@ class Step
|
|
342
361
|
IO === @result or @saved_stream or status == :streaming
|
343
362
|
end
|
344
363
|
|
364
|
+
|
345
365
|
def running?
|
346
|
-
|
347
|
-
return nil if
|
366
|
+
pid = info[:pid]
|
367
|
+
return nil if pid.nil?
|
348
368
|
|
349
|
-
pid = @pid || info[:pid]
|
350
369
|
if Misc.pid_exists?(pid)
|
351
370
|
pid
|
352
371
|
else
|
@@ -358,8 +377,13 @@ class Step
|
|
358
377
|
status == :error
|
359
378
|
end
|
360
379
|
|
380
|
+
def nopid?
|
381
|
+
pid = info[:pid]
|
382
|
+
pid.nil? && ! (status == :aborted || status == :done || status == :error)
|
383
|
+
end
|
384
|
+
|
361
385
|
def aborted?
|
362
|
-
|
386
|
+
status == :aborted || nopid?
|
363
387
|
end
|
364
388
|
|
365
389
|
# {{{ INFO
|
@@ -73,15 +73,20 @@ class Step
|
|
73
73
|
end
|
74
74
|
|
75
75
|
def self.prepare_for_execution(job)
|
76
|
-
return if
|
77
|
-
(job.streaming? and job.running?) or
|
78
|
-
(defined? WorkflowRESTClient and WorkflowRESTClient::RemoteStep === job and not (job.error? or job.aborted?))
|
76
|
+
return if job.done? && ! job.dirty?
|
79
77
|
|
80
|
-
|
78
|
+
status = job.status.to_s
|
79
|
+
if defined? WorkflowRESTClient && WorkflowRESTClient::RemoteStep === job
|
80
|
+
return if ! (status == 'done' and status == 'error' and status == 'aborted')
|
81
|
+
else
|
82
|
+
return if status == 'streaming' && job.running?
|
83
|
+
end
|
84
|
+
|
85
|
+
if (status == 'error' || job.aborted?) && job.recoverable_error?
|
81
86
|
job.clean
|
82
87
|
end
|
83
88
|
|
84
|
-
job.dup_inputs unless
|
89
|
+
job.dup_inputs unless status == 'done' or job.started?
|
85
90
|
|
86
91
|
raise DependencyError, job if job.error?
|
87
92
|
end
|
@@ -208,9 +213,10 @@ class Step
|
|
208
213
|
Misc.insist do
|
209
214
|
begin
|
210
215
|
dep.produce
|
211
|
-
Log.warn "Error
|
216
|
+
Log.warn "Error in bootstrap dependency #{dep.path}: #{dep.messages.last}" if dep.error? or dep.aborted?
|
212
217
|
rescue Aborted
|
213
218
|
dep.abort
|
219
|
+
Log.warn "Aborted bootstrap dependency #{dep.path}: #{dep.messages.last}" if dep.error? or dep.aborted?
|
214
220
|
raise $!
|
215
221
|
rescue Exception
|
216
222
|
dep.exception $!
|
@@ -323,8 +329,13 @@ class Step
|
|
323
329
|
end
|
324
330
|
|
325
331
|
def stop_dependencies
|
332
|
+
return if dependencies.nil?
|
326
333
|
dependencies.each do |dep|
|
327
|
-
|
334
|
+
begin
|
335
|
+
next if dep.done? or dep.aborted?
|
336
|
+
rescue
|
337
|
+
end
|
338
|
+
dep.abort
|
328
339
|
end
|
329
340
|
kill_children
|
330
341
|
end
|
@@ -107,7 +107,6 @@ class Step
|
|
107
107
|
log :setup, "#{Log.color :green, "Setup"} step #{Log.color :yellow, task.name.to_s || ""}"
|
108
108
|
|
109
109
|
merge_info({
|
110
|
-
:pid => Process.pid,
|
111
110
|
:issued => (issue_time = Time.now),
|
112
111
|
:name => name,
|
113
112
|
:clean_name => clean_name,
|
@@ -361,7 +360,6 @@ class Step
|
|
361
360
|
begin
|
362
361
|
Log.medium "Aborting job stream #{stream.inspect} -- #{Log.color :blue, path}"
|
363
362
|
stream.abort
|
364
|
-
#stream.close unless stream.closed?
|
365
363
|
rescue Aborted, Interrupt
|
366
364
|
Log.medium "Aborting job stream #{stream.inspect} ABORTED RETRY -- #{Log.color :blue, path}"
|
367
365
|
Log.exception $!
|
@@ -371,7 +369,7 @@ class Step
|
|
371
369
|
end
|
372
370
|
|
373
371
|
def _clean_finished
|
374
|
-
if Open.exists? path
|
372
|
+
if Open.exists? path and not status == :done
|
375
373
|
Log.warn "Aborted job had finished. Removing result -- #{ path }"
|
376
374
|
begin
|
377
375
|
Open.rm path
|
@@ -384,12 +382,12 @@ class Step
|
|
384
382
|
def _abort
|
385
383
|
return if @aborted
|
386
384
|
@aborted = true
|
387
|
-
return if done?
|
388
385
|
Log.medium{"#{Log.color :red, "Aborting"} #{Log.color :blue, path}"}
|
389
386
|
begin
|
387
|
+
return if done?
|
390
388
|
stop_dependencies
|
391
389
|
abort_stream
|
392
|
-
abort_pid if
|
390
|
+
abort_pid if running?
|
393
391
|
rescue Aborted, Interrupt
|
394
392
|
Log.medium{"#{Log.color :red, "Aborting ABORTED RETRY"} #{Log.color :blue, path}"}
|
395
393
|
retry
|
@@ -402,6 +400,7 @@ class Step
|
|
402
400
|
end
|
403
401
|
|
404
402
|
def abort
|
403
|
+
return if done? and status == :done
|
405
404
|
_abort
|
406
405
|
log(:aborted, "Job aborted") unless aborted? or error?
|
407
406
|
self
|
data/share/config.ru
CHANGED
@@ -88,11 +88,12 @@ jobs.each do |file,i|
|
|
88
88
|
|
89
89
|
status = info[:status].to_s
|
90
90
|
status = :missing if status == "done" and not File.exist? file
|
91
|
+
status = :nopid if status != "done" and pid.nil?
|
91
92
|
status = :dead if status != "done" and pid and not Misc.pid_exists?(pid)
|
92
93
|
status = :sync if status != "done" and File.exist? file
|
93
94
|
|
94
95
|
status = status.to_s
|
95
|
-
next unless status =~ /\berror$/ or status =~ /\bmissing$/ or status =~ /\baborted$/ or status =~ /\bdead$/ or status =~ /\bsync$/ or status == "" or (force and status == 'noinfo')
|
96
|
+
next unless status =~ /\bnopid/ or status =~ /\berror$/ or status =~ /\bmissing$/ or status =~ /\baborted$/ or status =~ /\bdead$/ or status =~ /\bsync$/ or status == "" or (force and status == 'noinfo')
|
96
97
|
puts " Removing #{ file } - #{status}"
|
97
98
|
Step.clean(file)
|
98
99
|
end
|
@@ -71,7 +71,7 @@ exception = info[:exception]
|
|
71
71
|
rest = info.keys - [:inputs, :dependencies, :status, :time_elapsed, :messages, :backtrace, :exception, :pid]
|
72
72
|
|
73
73
|
puts Log.color(:magenta, "File") << ": " << step.path
|
74
|
-
puts Log.color(:magenta, "Status") << ": " << status_msg(status)
|
74
|
+
puts Log.color(:magenta, "Status") << ": " << status_msg(status) << ((step.aborted? || step.error?) && step.recoverable_error? ? " (recoverable)" : "" )
|
75
75
|
puts Log.color(:magenta, "Pid") << ": " << pid_msg(pid, status.to_s == "done")
|
76
76
|
puts Log.color(:magenta, "Time") << ": " << time.to_i.to_s << " sec." if time
|
77
77
|
puts Log.color(:magenta, "Total time") << ": " << total_time.to_i.to_s << " sec." if time
|
@@ -62,7 +62,7 @@ def report(step, offset = 0)
|
|
62
62
|
info = step.info || {}
|
63
63
|
path = step.path
|
64
64
|
status = info[:status] || :missing
|
65
|
-
status =
|
65
|
+
status = "remote" if Open.remote?(path)
|
66
66
|
name = info[:name] || File.basename(path)
|
67
67
|
status = :unsync if status == :done and not File.exist? path
|
68
68
|
str = " " * offset
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: rbbt-util
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 5.21.
|
4
|
+
version: 5.21.6
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Miguel Vazquez
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2016-08-
|
11
|
+
date: 2016-08-04 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rake
|
@@ -484,82 +484,82 @@ signing_key:
|
|
484
484
|
specification_version: 4
|
485
485
|
summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
|
486
486
|
test_files:
|
487
|
-
- test/
|
487
|
+
- test/test_helper.rb
|
488
488
|
- test/rbbt/resource/test_path.rb
|
489
|
-
- test/rbbt/
|
490
|
-
- test/rbbt/
|
491
|
-
- test/rbbt/
|
492
|
-
- test/rbbt/
|
493
|
-
- test/rbbt/
|
494
|
-
- test/rbbt/util/
|
489
|
+
- test/rbbt/association/test_item.rb
|
490
|
+
- test/rbbt/association/test_database.rb
|
491
|
+
- test/rbbt/association/test_open.rb
|
492
|
+
- test/rbbt/association/test_index.rb
|
493
|
+
- test/rbbt/association/test_util.rb
|
494
|
+
- test/rbbt/util/test_concurrency.rb
|
495
495
|
- test/rbbt/util/test_log.rb
|
496
|
+
- test/rbbt/util/test_chain_methods.rb
|
497
|
+
- test/rbbt/util/test_simpleopt.rb
|
498
|
+
- test/rbbt/util/simpleopt/test_parse.rb
|
499
|
+
- test/rbbt/util/simpleopt/test_get.rb
|
500
|
+
- test/rbbt/util/simpleopt/test_setup.rb
|
501
|
+
- test/rbbt/util/test_cmd.rb
|
502
|
+
- test/rbbt/util/test_semaphore.rb
|
503
|
+
- test/rbbt/util/concurrency/test_threads.rb
|
504
|
+
- test/rbbt/util/concurrency/processes/test_socket.rb
|
505
|
+
- test/rbbt/util/concurrency/test_processes.rb
|
506
|
+
- test/rbbt/util/test_tmpfile.rb
|
496
507
|
- test/rbbt/util/test_open.rb
|
508
|
+
- test/rbbt/util/test_filecache.rb
|
509
|
+
- test/rbbt/util/R/test_eval.rb
|
510
|
+
- test/rbbt/util/R/test_model.rb
|
511
|
+
- test/rbbt/util/test_simpleDSL.rb
|
512
|
+
- test/rbbt/util/log/test_progress.rb
|
513
|
+
- test/rbbt/util/test_colorize.rb
|
514
|
+
- test/rbbt/util/test_R.rb
|
497
515
|
- test/rbbt/util/misc/test_lock.rb
|
498
|
-
- test/rbbt/util/misc/test_multipart_payload.rb
|
499
|
-
- test/rbbt/util/misc/test_bgzf.rb
|
500
516
|
- test/rbbt/util/misc/test_pipes.rb
|
517
|
+
- test/rbbt/util/misc/test_bgzf.rb
|
501
518
|
- test/rbbt/util/misc/test_omics.rb
|
502
|
-
- test/rbbt/util/
|
503
|
-
- test/rbbt/util/test_R.rb
|
504
|
-
- test/rbbt/util/log/test_progress.rb
|
505
|
-
- test/rbbt/util/test_colorize.rb
|
506
|
-
- test/rbbt/util/test_simpleopt.rb
|
519
|
+
- test/rbbt/util/misc/test_multipart_payload.rb
|
507
520
|
- test/rbbt/util/test_excel2tsv.rb
|
508
|
-
- test/rbbt/util/test_filecache.rb
|
509
|
-
- test/rbbt/util/concurrency/test_processes.rb
|
510
|
-
- test/rbbt/util/concurrency/test_threads.rb
|
511
|
-
- test/rbbt/util/concurrency/processes/test_socket.rb
|
512
|
-
- test/rbbt/util/test_semaphore.rb
|
513
521
|
- test/rbbt/util/test_misc.rb
|
514
|
-
- test/rbbt/util/test_tmpfile.rb
|
515
|
-
- test/rbbt/util/R/test_model.rb
|
516
|
-
- test/rbbt/util/R/test_eval.rb
|
517
|
-
- test/rbbt/test_packed_index.rb
|
518
|
-
- test/rbbt/entity/test_identifiers.rb
|
519
|
-
- test/rbbt/test_association.rb
|
520
|
-
- test/rbbt/knowledge_base/test_traverse.rb
|
521
|
-
- test/rbbt/knowledge_base/test_registry.rb
|
522
|
-
- test/rbbt/knowledge_base/test_entity.rb
|
523
|
-
- test/rbbt/knowledge_base/test_enrichment.rb
|
524
|
-
- test/rbbt/knowledge_base/test_syndicate.rb
|
525
|
-
- test/rbbt/knowledge_base/test_query.rb
|
526
|
-
- test/rbbt/test_resource.rb
|
527
522
|
- test/rbbt/test_entity.rb
|
528
|
-
- test/rbbt/test_knowledge_base.rb
|
529
|
-
- test/rbbt/annotations/test_util.rb
|
530
|
-
- test/rbbt/association/test_index.rb
|
531
|
-
- test/rbbt/association/test_item.rb
|
532
|
-
- test/rbbt/association/test_open.rb
|
533
|
-
- test/rbbt/association/test_util.rb
|
534
|
-
- test/rbbt/association/test_database.rb
|
535
|
-
- test/rbbt/test_tsv.rb
|
536
523
|
- test/rbbt/workflow/step/test_dependencies.rb
|
537
|
-
- test/rbbt/workflow/test_task.rb
|
538
|
-
- test/rbbt/workflow/test_step.rb
|
539
524
|
- test/rbbt/workflow/test_doc.rb
|
540
|
-
- test/rbbt/
|
541
|
-
- test/rbbt/
|
542
|
-
- test/rbbt/
|
543
|
-
- test/rbbt/
|
544
|
-
- test/rbbt/
|
545
|
-
- test/rbbt/
|
546
|
-
- test/rbbt/persist/tsv/test_sharder.rb
|
547
|
-
- test/rbbt/persist/tsv/test_cdb.rb
|
548
|
-
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
549
|
-
- test/rbbt/persist/tsv/test_leveldb.rb
|
550
|
-
- test/rbbt/tsv/test_field_index.rb
|
525
|
+
- test/rbbt/workflow/test_step.rb
|
526
|
+
- test/rbbt/workflow/test_task.rb
|
527
|
+
- test/rbbt/test_association.rb
|
528
|
+
- test/rbbt/test_knowledge_base.rb
|
529
|
+
- test/rbbt/tsv/parallel/test_traverse.rb
|
530
|
+
- test/rbbt/tsv/parallel/test_through.rb
|
551
531
|
- test/rbbt/tsv/test_parallel.rb
|
552
|
-
- test/rbbt/tsv/
|
553
|
-
- test/rbbt/tsv/test_matrix.rb
|
532
|
+
- test/rbbt/tsv/test_accessor.rb
|
554
533
|
- test/rbbt/tsv/test_change_id.rb
|
555
|
-
- test/rbbt/tsv/test_parser.rb
|
556
534
|
- test/rbbt/tsv/test_stream.rb
|
557
|
-
- test/rbbt/tsv/test_util.rb
|
558
|
-
- test/rbbt/tsv/test_accessor.rb
|
559
535
|
- test/rbbt/tsv/test_filter.rb
|
536
|
+
- test/rbbt/tsv/test_matrix.rb
|
560
537
|
- test/rbbt/tsv/test_attach.rb
|
561
538
|
- test/rbbt/tsv/test_manipulate.rb
|
562
|
-
- test/rbbt/tsv/
|
563
|
-
- test/rbbt/tsv/
|
539
|
+
- test/rbbt/tsv/test_field_index.rb
|
540
|
+
- test/rbbt/tsv/test_index.rb
|
541
|
+
- test/rbbt/tsv/test_util.rb
|
542
|
+
- test/rbbt/tsv/test_parser.rb
|
543
|
+
- test/rbbt/test_packed_index.rb
|
544
|
+
- test/rbbt/test_persist.rb
|
564
545
|
- test/rbbt/test_fix_width_table.rb
|
565
|
-
- test/
|
546
|
+
- test/rbbt/knowledge_base/test_traverse.rb
|
547
|
+
- test/rbbt/knowledge_base/test_entity.rb
|
548
|
+
- test/rbbt/knowledge_base/test_query.rb
|
549
|
+
- test/rbbt/knowledge_base/test_enrichment.rb
|
550
|
+
- test/rbbt/knowledge_base/test_syndicate.rb
|
551
|
+
- test/rbbt/knowledge_base/test_registry.rb
|
552
|
+
- test/rbbt/entity/test_identifiers.rb
|
553
|
+
- test/rbbt/test_monitor.rb
|
554
|
+
- test/rbbt/test_workflow.rb
|
555
|
+
- test/rbbt/test_annotations.rb
|
556
|
+
- test/rbbt/annotations/test_util.rb
|
557
|
+
- test/rbbt/test_resource.rb
|
558
|
+
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
559
|
+
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
560
|
+
- test/rbbt/persist/tsv/test_lmdb.rb
|
561
|
+
- test/rbbt/persist/tsv/test_leveldb.rb
|
562
|
+
- test/rbbt/persist/tsv/test_cdb.rb
|
563
|
+
- test/rbbt/persist/tsv/test_sharder.rb
|
564
|
+
- test/rbbt/persist/test_tsv.rb
|
565
|
+
- test/rbbt/test_tsv.rb
|