rbbt-util 5.21.32 → 5.21.33
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/lib/rbbt/workflow.rb +8 -2
- metadata +62 -62
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: 8afd3b9f5305997bf4c3b6b2d4926e762b5a76ff
|
4
|
+
data.tar.gz: 268f77023fb5e69917666b024c551e369158beae
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: c5c11e6bc69d3eaa940c5bb6af7ff8d5e26e7df8ba2d1407bcd20fb0dde0cf3d719f638a36f3d6be18bd9c9860938b788200cd40470c85c7a6d015eddf0bb132
|
7
|
+
data.tar.gz: 23a861cc0d596d8a8781f61747a2ddf790780454876b8d0aaf7fdd221adde03a2ba1a72a2d37c9505aa19ea2c5c3bd12c23cd7127f48909e29a6cb4ddc443255
|
data/lib/rbbt/workflow.rb
CHANGED
@@ -29,11 +29,18 @@ module Workflow
|
|
29
29
|
def self.autoinstall
|
30
30
|
@autoload ||= ENV["RBBT_WORKFLOW_AUTOINSTALL"] == "true"
|
31
31
|
end
|
32
|
+
|
32
33
|
def self.extended(base)
|
33
34
|
self.workflows << base
|
34
35
|
base.libdir = Path.setup(Path.caller_lib_dir).tap{|p| p.resource = base}
|
35
36
|
end
|
36
37
|
|
38
|
+
def self.init_remote_tasks
|
39
|
+
return if @@init_remote_tasks
|
40
|
+
load_remote_tasks(Rbbt.root.etc.remote_tasks.find) if Rbbt.root.etc.remote_tasks.exists?
|
41
|
+
@@init_remote_tasks = true
|
42
|
+
end
|
43
|
+
|
37
44
|
def self.require_remote_workflow(wf_name, url)
|
38
45
|
require 'rbbt/rest/client'
|
39
46
|
eval "Object::#{wf_name} = WorkflowRESTClient.new '#{ url }', '#{wf_name}'"
|
@@ -126,6 +133,7 @@ module Workflow
|
|
126
133
|
end
|
127
134
|
|
128
135
|
def self.require_workflow(wf_name, force_local=false)
|
136
|
+
Workflow.init_remote_tasks
|
129
137
|
# Already loaded
|
130
138
|
begin
|
131
139
|
workflow = Misc.string2const wf_name
|
@@ -438,6 +446,4 @@ module Workflow
|
|
438
446
|
Workflow.process_remote_tasks(remote_workflow_tasks)
|
439
447
|
end
|
440
448
|
|
441
|
-
load_remote_tasks(Rbbt.root.etc.remote_tasks.find) if Rbbt.root.etc.remote_tasks.exists?
|
442
|
-
|
443
449
|
end
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: rbbt-util
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 5.21.
|
4
|
+
version: 5.21.33
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Miguel Vazquez
|
@@ -487,82 +487,82 @@ signing_key:
|
|
487
487
|
specification_version: 4
|
488
488
|
summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
|
489
489
|
test_files:
|
490
|
-
- test/
|
490
|
+
- test/rbbt/test_workflow.rb
|
491
491
|
- test/rbbt/resource/test_path.rb
|
492
|
-
- test/rbbt/association/test_item.rb
|
493
|
-
- test/rbbt/association/test_database.rb
|
494
|
-
- test/rbbt/association/test_open.rb
|
495
|
-
- test/rbbt/association/test_index.rb
|
496
|
-
- test/rbbt/association/test_util.rb
|
497
|
-
- test/rbbt/util/test_concurrency.rb
|
498
|
-
- test/rbbt/util/test_log.rb
|
499
|
-
- test/rbbt/util/test_chain_methods.rb
|
500
|
-
- test/rbbt/util/test_simpleopt.rb
|
501
|
-
- test/rbbt/util/simpleopt/test_parse.rb
|
502
|
-
- test/rbbt/util/simpleopt/test_get.rb
|
503
|
-
- test/rbbt/util/simpleopt/test_setup.rb
|
504
492
|
- test/rbbt/util/test_cmd.rb
|
505
|
-
- test/rbbt/util/
|
506
|
-
- test/rbbt/util/
|
507
|
-
- test/rbbt/util/
|
508
|
-
- test/rbbt/util/
|
509
|
-
- test/rbbt/util/test_tmpfile.rb
|
510
|
-
- test/rbbt/util/test_open.rb
|
511
|
-
- test/rbbt/util/test_filecache.rb
|
512
|
-
- test/rbbt/util/R/test_eval.rb
|
513
|
-
- test/rbbt/util/R/test_model.rb
|
493
|
+
- test/rbbt/util/simpleopt/test_setup.rb
|
494
|
+
- test/rbbt/util/simpleopt/test_get.rb
|
495
|
+
- test/rbbt/util/simpleopt/test_parse.rb
|
496
|
+
- test/rbbt/util/test_chain_methods.rb
|
514
497
|
- test/rbbt/util/test_simpleDSL.rb
|
515
|
-
- test/rbbt/util/
|
516
|
-
- test/rbbt/util/
|
517
|
-
- test/rbbt/util/test_R.rb
|
498
|
+
- test/rbbt/util/test_log.rb
|
499
|
+
- test/rbbt/util/test_open.rb
|
518
500
|
- test/rbbt/util/misc/test_lock.rb
|
519
|
-
- test/rbbt/util/misc/
|
501
|
+
- test/rbbt/util/misc/test_multipart_payload.rb
|
520
502
|
- test/rbbt/util/misc/test_bgzf.rb
|
503
|
+
- test/rbbt/util/misc/test_pipes.rb
|
521
504
|
- test/rbbt/util/misc/test_omics.rb
|
522
|
-
- test/rbbt/util/
|
505
|
+
- test/rbbt/util/test_concurrency.rb
|
506
|
+
- test/rbbt/util/test_R.rb
|
507
|
+
- test/rbbt/util/log/test_progress.rb
|
508
|
+
- test/rbbt/util/test_colorize.rb
|
509
|
+
- test/rbbt/util/test_simpleopt.rb
|
523
510
|
- test/rbbt/util/test_excel2tsv.rb
|
511
|
+
- test/rbbt/util/test_filecache.rb
|
512
|
+
- test/rbbt/util/concurrency/test_processes.rb
|
513
|
+
- test/rbbt/util/concurrency/test_threads.rb
|
514
|
+
- test/rbbt/util/concurrency/processes/test_socket.rb
|
515
|
+
- test/rbbt/util/test_semaphore.rb
|
524
516
|
- test/rbbt/util/test_misc.rb
|
517
|
+
- test/rbbt/util/test_tmpfile.rb
|
518
|
+
- test/rbbt/util/R/test_model.rb
|
519
|
+
- test/rbbt/util/R/test_eval.rb
|
520
|
+
- test/rbbt/test_packed_index.rb
|
521
|
+
- test/rbbt/entity/test_identifiers.rb
|
522
|
+
- test/rbbt/test_association.rb
|
523
|
+
- test/rbbt/knowledge_base/test_traverse.rb
|
524
|
+
- test/rbbt/knowledge_base/test_registry.rb
|
525
|
+
- test/rbbt/knowledge_base/test_entity.rb
|
526
|
+
- test/rbbt/knowledge_base/test_enrichment.rb
|
527
|
+
- test/rbbt/knowledge_base/test_syndicate.rb
|
528
|
+
- test/rbbt/knowledge_base/test_query.rb
|
529
|
+
- test/rbbt/test_resource.rb
|
525
530
|
- test/rbbt/test_entity.rb
|
531
|
+
- test/rbbt/test_knowledge_base.rb
|
532
|
+
- test/rbbt/annotations/test_util.rb
|
533
|
+
- test/rbbt/association/test_index.rb
|
534
|
+
- test/rbbt/association/test_item.rb
|
535
|
+
- test/rbbt/association/test_open.rb
|
536
|
+
- test/rbbt/association/test_util.rb
|
537
|
+
- test/rbbt/association/test_database.rb
|
538
|
+
- test/rbbt/test_tsv.rb
|
526
539
|
- test/rbbt/workflow/step/test_dependencies.rb
|
527
|
-
- test/rbbt/workflow/test_doc.rb
|
528
|
-
- test/rbbt/workflow/test_step.rb
|
529
540
|
- test/rbbt/workflow/test_task.rb
|
530
|
-
- test/rbbt/
|
531
|
-
- test/rbbt/
|
532
|
-
- test/rbbt/
|
533
|
-
- test/rbbt/
|
541
|
+
- test/rbbt/workflow/test_step.rb
|
542
|
+
- test/rbbt/workflow/test_doc.rb
|
543
|
+
- test/rbbt/test_monitor.rb
|
544
|
+
- test/rbbt/test_persist.rb
|
545
|
+
- test/rbbt/test_annotations.rb
|
546
|
+
- test/rbbt/persist/test_tsv.rb
|
547
|
+
- test/rbbt/persist/tsv/test_lmdb.rb
|
548
|
+
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
549
|
+
- test/rbbt/persist/tsv/test_sharder.rb
|
550
|
+
- test/rbbt/persist/tsv/test_cdb.rb
|
551
|
+
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
552
|
+
- test/rbbt/persist/tsv/test_leveldb.rb
|
553
|
+
- test/rbbt/tsv/test_field_index.rb
|
534
554
|
- test/rbbt/tsv/test_parallel.rb
|
535
|
-
- test/rbbt/tsv/
|
555
|
+
- test/rbbt/tsv/test_index.rb
|
556
|
+
- test/rbbt/tsv/test_matrix.rb
|
536
557
|
- test/rbbt/tsv/test_change_id.rb
|
558
|
+
- test/rbbt/tsv/test_parser.rb
|
537
559
|
- test/rbbt/tsv/test_stream.rb
|
560
|
+
- test/rbbt/tsv/test_util.rb
|
561
|
+
- test/rbbt/tsv/test_accessor.rb
|
538
562
|
- test/rbbt/tsv/test_filter.rb
|
539
|
-
- test/rbbt/tsv/test_matrix.rb
|
540
563
|
- test/rbbt/tsv/test_attach.rb
|
541
564
|
- test/rbbt/tsv/test_manipulate.rb
|
542
|
-
- test/rbbt/tsv/
|
543
|
-
- test/rbbt/tsv/
|
544
|
-
- test/rbbt/tsv/test_util.rb
|
545
|
-
- test/rbbt/tsv/test_parser.rb
|
546
|
-
- test/rbbt/test_packed_index.rb
|
547
|
-
- test/rbbt/test_persist.rb
|
565
|
+
- test/rbbt/tsv/parallel/test_through.rb
|
566
|
+
- test/rbbt/tsv/parallel/test_traverse.rb
|
548
567
|
- test/rbbt/test_fix_width_table.rb
|
549
|
-
- test/
|
550
|
-
- test/rbbt/knowledge_base/test_entity.rb
|
551
|
-
- test/rbbt/knowledge_base/test_query.rb
|
552
|
-
- test/rbbt/knowledge_base/test_enrichment.rb
|
553
|
-
- test/rbbt/knowledge_base/test_syndicate.rb
|
554
|
-
- test/rbbt/knowledge_base/test_registry.rb
|
555
|
-
- test/rbbt/entity/test_identifiers.rb
|
556
|
-
- test/rbbt/test_monitor.rb
|
557
|
-
- test/rbbt/test_workflow.rb
|
558
|
-
- test/rbbt/test_annotations.rb
|
559
|
-
- test/rbbt/annotations/test_util.rb
|
560
|
-
- test/rbbt/test_resource.rb
|
561
|
-
- test/rbbt/persist/tsv/test_tokyocabinet.rb
|
562
|
-
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
563
|
-
- test/rbbt/persist/tsv/test_lmdb.rb
|
564
|
-
- test/rbbt/persist/tsv/test_leveldb.rb
|
565
|
-
- test/rbbt/persist/tsv/test_cdb.rb
|
566
|
-
- test/rbbt/persist/tsv/test_sharder.rb
|
567
|
-
- test/rbbt/persist/test_tsv.rb
|
568
|
-
- test/rbbt/test_tsv.rb
|
568
|
+
- test/test_helper.rb
|