rbbt-util 5.21.20 → 5.21.21

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. checksums.yaml +4 -4
  2. data/lib/rbbt/rest/client/get.rb +1 -1
  3. data/lib/rbbt/rest/client/step.rb +16 -4
  4. data/lib/rbbt/tsv/util.rb +2 -0
  5. metadata +3 -3
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA1:
3
- metadata.gz: 0df0c7ae6b0b29814a176c029ed4c9f20e13307c
4
- data.tar.gz: 228920d67af31815ef453b4f05b0c1bc32cf1175
3
+ metadata.gz: 19e5a7eb74a769263c8009fbff7e61599240b692
4
+ data.tar.gz: ee05a8abc85526fc13b2d7404d31b789dfe89bcc
5
5
  SHA512:
6
- metadata.gz: 0af021e82639371b123a9b04ae7d1b89541bf19e7c446fd8ce38ecd25066d06f585d36872edb636e61856b82e3e45b67cc2aa67ffdb236904f81e7d93ca8f160
7
- data.tar.gz: c1a0e4a399e442a2d8545d71f28636ffcccb0fb1c60422c84c47806cef041738fa22ed10fe9aeb7fd5a347c635e837a025c1df4c3f402c42e520d100482321fd
6
+ metadata.gz: 6484d908c7cc09f2dc2b78c216a96ba0a40523cb7551effc001d702fb61145930eeb09b003a49acedd3c7d0aa5e4add13115f6e1539548322c71b903944b736b
7
+ data.tar.gz: cf87b44094173fd5f9a1529a08fca8d4df0c416da6ce720f3883c3bda412af34834e0682f9421b4fb2bf55e18beba60ec01f6a49870c04f46f6353e356661075
data/lib/rbbt/rest/client/get.rb CHANGED
@@ -85,7 +85,7 @@ class WorkflowRESTClient
85
85
  raise "No url" if url.nil?
86
86
  res = RestClient.get(self.encode(url), :params => params)
87
87
  raise TryAgain if res.code == 202
88
- res
88
+ res.to_s
89
89
  end
90
90
  end
91
91
  res
data/lib/rbbt/rest/client/step.rb CHANGED
@@ -293,10 +293,22 @@ class WorkflowRESTClient
293
293
  (stream ? res.read : res).split("\n")
294
294
  res.split("\n")
295
295
  else
296
- if IO === res
297
- JSON.parse res.read
298
- else
299
- JSON.parse res
296
+ json_text = if IO === res
297
+ res.read
298
+ else
299
+ res
300
+ end
301
+ begin
302
+ JSON.parse json_text
303
+ rescue
304
+ case
305
+ when json_text =~ /^\d+$/
306
+ json_text.to_i
307
+ when json_text =~ /^\d+\.\d/
308
+ json_text.to_f
309
+ else
310
+ raise $!
311
+ end
300
312
  end
301
313
  end
302
314
  end
data/lib/rbbt/tsv/util.rb CHANGED
@@ -68,6 +68,8 @@ module TSV
68
68
  file.abort
69
69
  end
70
70
  end
71
+ elsif Hash === file or Array === file
72
+ return
71
73
  else
72
74
  stream = get_stream(file)
73
75
  stream.abort(exception) if stream.respond_to? :abort
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: rbbt-util
3
3
  version: !ruby/object:Gem::Version
4
- version: 5.21.20
4
+ version: 5.21.21
5
5
  platform: ruby
6
6
  authors:
7
7
  - Miguel Vazquez
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2016-09-09 00:00:00.000000000 Z
11
+ date: 2016-09-10 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: rake
@@ -482,7 +482,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
482
482
  version: '0'
483
483
  requirements: []
484
484
  rubyforge_project:
485
- rubygems_version: 2.4.6
485
+ rubygems_version: 2.6.6
486
486
  signing_key:
487
487
  specification_version: 4
488
488
  summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)