rbbt-util 5.21.20 → 5.21.21

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 0df0c7ae6b0b29814a176c029ed4c9f20e13307c
-  data.tar.gz: 228920d67af31815ef453b4f05b0c1bc32cf1175
+  metadata.gz: 19e5a7eb74a769263c8009fbff7e61599240b692
+  data.tar.gz: ee05a8abc85526fc13b2d7404d31b789dfe89bcc
 SHA512:
-  metadata.gz: 0af021e82639371b123a9b04ae7d1b89541bf19e7c446fd8ce38ecd25066d06f585d36872edb636e61856b82e3e45b67cc2aa67ffdb236904f81e7d93ca8f160
-  data.tar.gz: c1a0e4a399e442a2d8545d71f28636ffcccb0fb1c60422c84c47806cef041738fa22ed10fe9aeb7fd5a347c635e837a025c1df4c3f402c42e520d100482321fd
+  metadata.gz: 6484d908c7cc09f2dc2b78c216a96ba0a40523cb7551effc001d702fb61145930eeb09b003a49acedd3c7d0aa5e4add13115f6e1539548322c71b903944b736b
+  data.tar.gz: cf87b44094173fd5f9a1529a08fca8d4df0c416da6ce720f3883c3bda412af34834e0682f9421b4fb2bf55e18beba60ec01f6a49870c04f46f6353e356661075

data/lib/rbbt/rest/client/get.rb

@@ -85,7 +85,7 @@ class WorkflowRESTClient
         raise "No url" if url.nil?
         res = RestClient.get(self.encode(url), :params => params)
         raise TryAgain if res.code == 202
-        res
+        res.to_s
       end
     end
     res

data/lib/rbbt/rest/client/step.rb

@@ -293,10 +293,22 @@ class WorkflowRESTClient
         (stream ? res.read : res).split("\n")
         res.split("\n")
       else
-        if IO === res
-          JSON.parse res.read
-        else
-          JSON.parse res
+        json_text = if IO === res
+                      res.read
+                    else
+                      res
+                    end
+        begin
+          JSON.parse json_text
+        rescue
+          case
+          when json_text =~ /^\d+$/
+            json_text.to_i
+          when json_text =~ /^\d+\.\d/
+            json_text.to_f
+          else
+            raise $!
+          end
         end
       end
     end

data/lib/rbbt/tsv/util.rb

@@ -68,6 +68,8 @@ module TSV
           file.abort 
         end
       end
+    elsif Hash === file or Array === file
+      return
     else
       stream = get_stream(file)
       stream.abort(exception) if stream.respond_to? :abort

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.21.20
+  version: 5.21.21
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-09-09 00:00:00.000000000 Z
+date: 2016-09-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
@@ -482,7 +482,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.4.6
+rubygems_version: 2.6.6
 signing_key: 
 specification_version: 4
 summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)