rbbt-util 5.17.54 → 5.17.55

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 0eff9b6b56a7749a8fc52d8f0d9ffc155ea26063
-  data.tar.gz: d2cc3438a4cf6e5f9763c5b251033f6cdea12e8b
+  metadata.gz: c7dc0ccac314db71b52743fed88ff75b47211075
+  data.tar.gz: 91db3a2a2869f4c223651d09982b2c9ad244be5c
 SHA512:
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+  metadata.gz: 887b843bdd42533c81f3310289c6f7455b9074667d1305124d6c32566fe84ab7bcef90d63b54eaf0dbc4169f369ba0a1f6fbda0140719ef02893b7098293bdb1
+  data.tar.gz: 8b04905bedadd987e785fc680be47a0e8daf8ce6612b8d079dbd75e38d5fc97f122bad426e0a21a8a706eaf99837441684be9bf5faba6b4d50a31d2c09be40d5

data/lib/rbbt/util/misc/omics.rb

@@ -250,6 +250,7 @@ module Misc
 
   def self.intersect_streams(f1, f2, out, sep=":")
     finish = false
+    return if f1.eof? or f2.eof?
     line1, chr1, start1, eend1, rest1 = intersect_streams_read(f1,sep)
     line2, chr2, start2, eend2, rest2 = intersect_streams_read(f2,sep)
     while not finish

data/lib/rbbt/workflow/accessor.rb

@@ -453,7 +453,8 @@ module Workflow
                               deps.each do |dep| 
                                 case dep
                                 when Array
-                                  dep.first.rec_dependencies(dep.last).each do |d|
+                                  wf, t = dep
+                                  wf.rec_dependencies(t).each do |d|
                                     if Array === d
                                       all_deps << d
                                     else

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.17.54
+  version: 5.17.55
 platform: ruby
 authors:
 - Miguel Vazquez