rbbt-util 5.17.52 → 5.17.53
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- checksums.yaml +4 -4
- data/lib/rbbt/rest/client/step.rb +1 -1
- data/lib/rbbt/util/misc/omics.rb +0 -3
- data/lib/rbbt/util/misc/pipes.rb +3 -1
- data/lib/rbbt/util/tmpfile.rb +5 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA1:
|
3
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-
metadata.gz:
|
4
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-
data.tar.gz:
|
3
|
+
metadata.gz: 9998932f7037c551f4aef97c75fa09296f0e4cba
|
4
|
+
data.tar.gz: c52cab12dc83feea2d889ecffbc2e07472e02b61
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: b7030c7870cc8ea1ca80d76509c4526ae5435321dcd22561a661c6b57fb190d641a010b9b222e1295504807c7fd226fb4642e8c00e9ac2b02c33aa678b9a0141
|
7
|
+
data.tar.gz: 02546e560b57a8bce92689137e58b4dfe8165e5095cf9382a98f6c588b19970b2b2a75dace012ba2067fb38312b9cdd83d4fea17769f85d7bae6265bf9f8592b
|
data/lib/rbbt/util/misc/omics.rb
CHANGED
data/lib/rbbt/util/misc/pipes.rb
CHANGED
@@ -174,6 +174,8 @@ module Misc
|
|
174
174
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else
|
175
175
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Log.medium "Consuming stream #{Misc.fingerprint io}"
|
176
176
|
begin
|
177
|
+
into = into.find if Path === into
|
178
|
+
into = Open.open(into, :mode => 'w') if String === into
|
177
179
|
into.sync == true if IO === into
|
178
180
|
while not io.closed? and block = io.read(2048)
|
179
181
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into << block if into
|
@@ -295,7 +297,7 @@ module Misc
|
|
295
297
|
end
|
296
298
|
end
|
297
299
|
|
298
|
-
def self.sort_stream(stream, header_hash = "#", cmd_args = "
|
300
|
+
def self.sort_stream(stream, header_hash = "#", cmd_args = "-u")
|
299
301
|
Misc.open_pipe do |sin|
|
300
302
|
begin
|
301
303
|
if defined? Step and Step === stream
|
data/lib/rbbt/util/tmpfile.rb
CHANGED
@@ -34,7 +34,11 @@ module TmpFile
|
|
34
34
|
tmpfile += ".#{options[:extension]}"
|
35
35
|
end
|
36
36
|
|
37
|
-
|
37
|
+
if IO === content
|
38
|
+
Misc.consume_stream(content, false, tmpfile)
|
39
|
+
else
|
40
|
+
File.open(tmpfile, 'w') do |f| f.write content end if content != nil
|
41
|
+
end
|
38
42
|
|
39
43
|
result = yield(tmpfile)
|
40
44
|
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: rbbt-util
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 5.17.
|
4
|
+
version: 5.17.53
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Miguel Vazquez
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2015-07-
|
11
|
+
date: 2015-07-08 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rake
|