rbbt-util 5.17.46 → 5.17.47

Sign up to get free protection for your applications and to get access to all the features.
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA1:
3
- metadata.gz: 343bf453468db2fccabfac2f4bdc61766d5a13dc
4
- data.tar.gz: 99da330d0c5b25fb5c641356b8bb6db857b2631a
3
+ metadata.gz: a424c1af41a6ea47d6c9a0e450c2ed759840eb85
4
+ data.tar.gz: 9ef4162cc1a9676fc7854f59b31b49e6e9c5a57d
5
5
  SHA512:
6
- metadata.gz: 740316fe25f986440370d4f3fb0bb5178f442deee5b02d5e7ad1b0129e1174846371669c0f6bf39bfc18ce24582ae69319be36521f715d242140ff4f70cb5206
7
- data.tar.gz: 854f65081846e9830d4d62318d4dd5884f8421bcfb35d432c22d90c49f31f04b4df3c8ca42933fed8023991ac478ee484054f92af200b05340c8cba536b949a3
6
+ metadata.gz: f04c5460e1ce49c6c08e5f913a8739273b9cb6299b35821eddec73dee42c271d71d312f8bf346370dfd02a1e678645c6bd10efc356abe6849f9778781552af83
7
+ data.tar.gz: d080de01ac9d7f0eab395189a83cbd824e844665dcb9bb15e97856dbdf5d0e30b96135277d3ab5220115ec3730a04acb60d934c89b4625c75c0d3b026172973b
@@ -10,9 +10,9 @@ module TSV
10
10
 
11
11
  is = case
12
12
  when (String === input and not input.index("\n") and input.length < 250 and File.exists?(input))
13
- CMD.cmd("sort -k1,1 -t'#{sep}' #{ input } | grep -v '^#{sep}' ", :pipe => true)
13
+ CMD.cmd("env LC_ALL=C sort -k1,1 -t'#{sep}' #{ input } | grep -v '^#{sep}' ", :pipe => true)
14
14
  when (String === input or StringIO === input)
15
- CMD.cmd("sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => input, :pipe => true)
15
+ CMD.cmd("env LC_ALL=C sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => input, :pipe => true)
16
16
  else
17
17
  input
18
18
  end
@@ -70,22 +70,22 @@ module TSV
70
70
  case
71
71
  when (String === file1 and not file1 =~ /\n/ and file1.length < 250 and File.exists?(file1))
72
72
  size = CMD.cmd("wc -c '#{file1}'").read.to_f if monitor
73
- file1 = CMD.cmd("sort -k1,1 -t'#{sep}' #{ file1 } | grep -v '^#{sep}' ", :pipe => true)
73
+ file1 = CMD.cmd("env LC_ALL=C sort -k1,1 -t'#{sep}' #{ file1 } | grep -v '^#{sep}' ", :pipe => true)
74
74
  when (String === file1 or StringIO === file1)
75
75
  size = file1.length if monitor
76
- file1 = CMD.cmd("sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => file1, :pipe => true)
76
+ file1 = CMD.cmd("env LC_ALL=C sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => file1, :pipe => true)
77
77
  when TSV === file1
78
78
  size = file1.size if monitor
79
- file1 = CMD.cmd("sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => file1.to_s(:sort, true), :pipe => true)
79
+ file1 = CMD.cmd("env LC_ALL=C sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => file1.to_s(:sort, true), :pipe => true)
80
80
  end
81
81
 
82
82
  case
83
83
  when (String === file2 and not file2 =~ /\n/ and file2.length < 250 and File.exists?(file2))
84
- file2 = CMD.cmd("sort -k1,1 -t'#{sep}' #{ file2 } | grep -v '^#{sep}' ", :pipe => true)
84
+ file2 = CMD.cmd("env LC_ALL=C sort -k1,1 -t'#{sep}' #{ file2 } | grep -v '^#{sep}' ", :pipe => true)
85
85
  when (String === file2 or StringIO === file2)
86
- file2 = CMD.cmd("sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => file2, :pipe => true)
86
+ file2 = CMD.cmd("env LC_ALL=C sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => file2, :pipe => true)
87
87
  when TSV === file2
88
- file2 = CMD.cmd("sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => file2.to_s(:sort, true), :pipe => true)
88
+ file2 = CMD.cmd("env LC_ALL=C sort -k1,1 -t'#{sep}' | grep -v '^#{sep}'", :in => file2.to_s(:sort, true), :pipe => true)
89
89
  end
90
90
 
91
91
  begin
@@ -322,7 +322,7 @@ module Misc
322
322
  end
323
323
  end
324
324
 
325
- sorted = CMD.cmd("sort #{cmd_args || ""}", :in => line_stream, :pipe => true)
325
+ sorted = CMD.cmd("env LC_ALL=C sort #{cmd_args || ""}", :in => line_stream, :pipe => true)
326
326
 
327
327
  while block = sorted.read(2048)
328
328
  sin.write block
@@ -13,10 +13,11 @@ require 'rbbt/rest/knowledge_base'
13
13
  require 'rbbt/rest/helpers'
14
14
  require 'rbbt/rest/web_tool'
15
15
 
16
- options = SOPT.get "-e--environment*:-p--port*:-s--server*:-b--bind*:-e--environment*:-R--RServe_session*:--finder:--views*"
16
+ options = SOPT.get "-e--environment*:-p--port*:-s--server*:-b--bind*:-e--environment*:-R--RServe_session*:--finder:--views*:-w--workflows*"
17
17
 
18
18
  template = ARGV.first
19
19
 
20
+ template = File.expand_path(template)
20
21
  template = template.sub('.haml','')
21
22
 
22
23
  ENV["RBBT_FINDER"] = "true" if options.include?(:finder)
@@ -24,11 +24,11 @@ file = ARGV.shift
24
24
  file = STDIN if file == '-' or file.nil?
25
25
 
26
26
 
27
- field = options[:field]
27
+ field = options[:field] || '2'
28
28
  if field =~ /^\d+$/
29
29
  field_pos = field.to_i
30
30
  else
31
- field_pos = TSV.parse_header(file).all_fields.index(field) + 1
31
+ field_pos = TSV.parse_header(file, options).all_fields.index(field) + 1
32
32
  end
33
33
 
34
34
  rest = ARGV.inject("-t\"\t\" -g -k#{field_pos}"){|acc,e| acc << " '#{e}'" }
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: rbbt-util
3
3
  version: !ruby/object:Gem::Version
4
- version: 5.17.46
4
+ version: 5.17.47
5
5
  platform: ruby
6
6
  authors:
7
7
  - Miguel Vazquez
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2015-06-11 00:00:00.000000000 Z
11
+ date: 2015-06-12 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: rake