rbbt-util 5.14.24 → 5.14.25
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/tsv/util.rb +7 -1
- data/lib/rbbt/util/R.rb +6 -5
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 88885c1c0256441286016e2dcce5064c4bd62c75
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4
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data.tar.gz: 73044f407bdd1fb7c936841074211291cc13a327
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5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: c61172f11902cc5eb070d82a764a469741f9899efbf7fda38c011a18cde6306bbfcfc6e6251372af29f8a5565dd7ffaccf7d091b98cc5ce3715bc6508ef41131
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7
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data.tar.gz: f34f9a02776870e4dcc253877f953ea48d278a5a60bec8481b04eb084c97d53aa65034133c336ea53e8edfa2c65b20e3cb8de9cb0af3a42d4861ae09771839f5
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data/lib/rbbt/tsv/util.rb
CHANGED
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@@ -90,7 +90,13 @@ module TSV
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90
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file.stream
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when Path
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file.open(open_options)
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-
when
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when (defined? Tempfile and Tempfile)
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begin
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file.rewind if file.respond_to?(:rewind) and file.eof?
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rescue
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end
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file
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when IO, StringIO, File
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begin
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file.rewind if file.respond_to?(:rewind) and file.eof?
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rescue
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data/lib/rbbt/util/R.rb
CHANGED
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@@ -26,7 +26,7 @@ source('#{UTIL}');
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Log.debug{"R Script:\n#{ cmd }"}
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if options.delete :monitor
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io = CMD.cmd('R --vanilla --slave --quiet', options.merge(:in => cmd, :pipe => true))
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io = CMD.cmd('R --vanilla --slave --quiet', options.merge(:in => cmd, :pipe => true, :log => true))
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while line = io.gets
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puts line
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end
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@@ -85,8 +85,8 @@ module TSV
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def R(script, open_options = {})
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TmpFile.with_file do |f|
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Open.write(f, self.to_s)
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-
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-
<<-EOF
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+
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script = <<-EOF
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## Loading tsv into data
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data = rbbt.tsv('#{f}');
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@@ -95,9 +95,10 @@ data = rbbt.tsv('#{f}');
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## Resaving data
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if (! is.null(data)){ rbbt.tsv.write('#{f}', data); }
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EOF
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-
)
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-
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r_options = Misc.pull_keys open_options, :R
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io = R.run script, r_options
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open_options = Misc.add_defaults open_options, :type => :list
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if open_options[:raw]
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: rbbt-util
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version: !ruby/object:Gem::Version
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-
version: 5.14.
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version: 5.14.25
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-09-
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date: 2014-09-07 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rake
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