rbbt-util 5.13.20 → 5.13.21
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checksums.yaml
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@@ -1,7 +1,7 @@
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: abdf8f28beb9196592b55ba4bce0a36931c8f880
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data.tar.gz: eaacc6b9157a3edafe34c6b3b2db9435c9d9dd08
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: c832c458e7434da05bdd203097e787815e35b444c12faf1d6e6de423b2d282528c2a9ed4c379be8580c65b6d71fa01d8595ebf313e59de0dddc1ef3ba2e4ce5a
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data.tar.gz: f37553cde0d158988bde704bb73f014d4e8e2d311447d37f87ee61bae7bd314d8e54263438dfce9d22aabf3258b862b87d3fbf910ec4d2f61eb066e75f41d30d
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@@ -29,11 +29,12 @@ class RbbtProcessQueue
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end
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rescue Aborted
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Log.warn "Callback thread aborted"
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@process_monitor.raise
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@process_monitor.raise $!
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raise $!
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rescue ClosedStream
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rescue Exception
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Log.warn "Callback thread exception: #{$!.message}"
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Log.exception $!
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@process_monitor.raise $!
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raise $!
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ensure
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data/lib/rbbt/util/misc/lock.rb
CHANGED
@@ -5,6 +5,18 @@ class Step
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INFO_SERIALIAZER = Marshal
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def self.wait_for_jobs(jobs)
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begin
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threads = []
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jobs.each do |j| threads << Thread.new{j.grace.join} end
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threads.each{|t| t.join }
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rescue Exception
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threads.each{|t| t.exit }
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jobs.each do |j| j.abort end
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raise $!
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end
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end
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def self.files_dir(path)
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path.nil? ? nil : path + '.files'
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end
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@@ -0,0 +1,81 @@
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#!/usr/bin/env ruby
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require 'rbbt/workflow'
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require 'rbbt-util'
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require 'rbbt-util'
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require 'rbbt/util/simpleopt'
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$0 = "rbbt #{$previous_commands*""} #{ File.basename(__FILE__) }" if $previous_commands
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options = SOPT.setup <<EOF
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Examine the info of a job result
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$ rbbt workflow info <job-result>
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-h--help Help
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EOF
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SOPT.usage if options[:help]
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file = ARGV.shift
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def get_step(file)
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file = file.sub(/\.(info|files)/,'')
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Step.new file
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end
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def status_msg(status)
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color = case status
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when :error, :aborted, :missing
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:red
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when :streaming
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:yellow
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when :done
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:green
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else
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nil
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end
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Log.color(color, status)
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end
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step = get_step file
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info = step.info
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dependencies = info[:dependencies]
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inputs = info[:inputs]
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status = info[:status]
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time = info[:time_elapsed]
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messages = info[:messages]
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puts Log.color(:magenta, "File") << ": " << step.path
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puts Log.color(:magenta, "Status") << ": " << status_msg(status)
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puts Log.color(:magenta, "Time") << ": " << time.to_i.to_s << " sec." if time
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if inputs and inputs.any?
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puts Log.color(:magenta, "Inputs")
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inputs.each do |input,value|
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case value
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when Array
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puts " " << Misc.format_definition_list_item(input, value[0..5]*"\n", 80, 20, :blue)
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when TrueClass, FalseClass
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puts " " << Misc.format_definition_list_item(input, value.to_s, 80, 20, :blue)
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else
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text = value.split("\n")[0..5].compact * "\n\n"
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puts " " << Misc.format_definition_list_item(input, text, 80, 20, :blue)
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end
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end
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end
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if dependencies and dependencies.any?
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puts Log.color(:magenta, "Dependencies") << ": "
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dependencies.each do |name,task,file|
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puts " " << file
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end
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end
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if messages and messages.any?
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puts Log.color(:magenta, "Messages") << ": "
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messages.each do |msg|
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puts " " << msg
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end
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end
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@@ -8,6 +8,21 @@ require 'rbbt/util/simpleopt'
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require 'rbbt/workflow/step'
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require 'rbbt/util/misc'
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require 'rbbt-util'
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require 'rbbt/util/simpleopt'
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$0 = "rbbt #{$previous_commands*""} #{ File.basename(__FILE__) }" if $previous_commands
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options = SOPT.setup <<EOF
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Examine the provenance of a job result
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$ rbbt workflow prov <job-result>
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-h--help Help
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EOF
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SOPT.usage if options[:help]
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file = ARGV.shift
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$seen = []
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metadata
CHANGED
@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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2
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name: rbbt-util
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version: !ruby/object:Gem::Version
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-
version: 5.13.
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version: 5.13.21
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2014-05-
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date: 2014-05-27 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rake
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@@ -258,6 +258,7 @@ files:
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- share/rbbt_commands/tsv/values
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- share/rbbt_commands/workflow/cmd
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- share/rbbt_commands/workflow/example
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- share/rbbt_commands/workflow/info
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- share/rbbt_commands/workflow/install
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- share/rbbt_commands/workflow/jobs
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- share/rbbt_commands/workflow/list
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