rbbt-util 5.11.9 → 5.12.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/persist.rb +1 -1
- data/lib/rbbt/tsv.rb +1 -0
- data/lib/rbbt/tsv/dumper.rb +1 -2
- data/lib/rbbt/tsv/parallel/traverse.rb +2 -2
- data/lib/rbbt/tsv/parser.rb +6 -2
- data/lib/rbbt/tsv/stream.rb +55 -0
- data/lib/rbbt/tsv/util.rb +7 -1
- data/lib/rbbt/util/misc.rb +5 -762
- data/lib/rbbt/util/misc/concurrent_stream.rb +15 -0
- data/lib/rbbt/util/misc/development.rb +122 -0
- data/lib/rbbt/util/misc/inspect.rb +3 -3
- data/lib/rbbt/util/misc/manipulation.rb +136 -0
- data/lib/rbbt/util/misc/math.rb +50 -0
- data/lib/rbbt/util/misc/objects.rb +79 -0
- data/lib/rbbt/util/misc/omics.rb +10 -0
- data/lib/rbbt/util/misc/options.rb +280 -0
- data/lib/rbbt/util/misc/pipes.rb +140 -20
- data/lib/rbbt/util/misc/system.rb +90 -0
- data/lib/rbbt/util/tar.rb +0 -7
- data/lib/rbbt/workflow/accessor.rb +3 -3
- data/lib/rbbt/workflow/step/run.rb +69 -15
- data/lib/rbbt/workflow/task.rb +7 -5
- data/test/rbbt/tsv/test_stream.rb +92 -0
- data/test/rbbt/tsv/test_util.rb +1 -3
- data/test/rbbt/util/misc/test_pipes.rb +79 -0
- data/test/rbbt/workflow/test_task.rb +1 -0
- metadata +10 -2
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: rbbt-util
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 5.
|
|
4
|
+
version: 5.12.0
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Miguel Vazquez
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2014-04-
|
|
11
|
+
date: 2014-04-15 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: rake
|
|
@@ -158,6 +158,7 @@ files:
|
|
|
158
158
|
- lib/rbbt/tsv/parallel/traverse.rb
|
|
159
159
|
- lib/rbbt/tsv/parser.rb
|
|
160
160
|
- lib/rbbt/tsv/serializers.rb
|
|
161
|
+
- lib/rbbt/tsv/stream.rb
|
|
161
162
|
- lib/rbbt/tsv/util.rb
|
|
162
163
|
- lib/rbbt/util/R.rb
|
|
163
164
|
- lib/rbbt/util/chain_methods.rb
|
|
@@ -181,10 +182,13 @@ files:
|
|
|
181
182
|
- lib/rbbt/util/misc/indiferent_hash.rb
|
|
182
183
|
- lib/rbbt/util/misc/inspect.rb
|
|
183
184
|
- lib/rbbt/util/misc/lock.rb
|
|
185
|
+
- lib/rbbt/util/misc/manipulation.rb
|
|
184
186
|
- lib/rbbt/util/misc/math.rb
|
|
185
187
|
- lib/rbbt/util/misc/objects.rb
|
|
186
188
|
- lib/rbbt/util/misc/omics.rb
|
|
189
|
+
- lib/rbbt/util/misc/options.rb
|
|
187
190
|
- lib/rbbt/util/misc/pipes.rb
|
|
191
|
+
- lib/rbbt/util/misc/system.rb
|
|
188
192
|
- lib/rbbt/util/named_array.rb
|
|
189
193
|
- lib/rbbt/util/open.rb
|
|
190
194
|
- lib/rbbt/util/semaphore.rb
|
|
@@ -287,10 +291,12 @@ files:
|
|
|
287
291
|
- test/rbbt/tsv/test_manipulate.rb
|
|
288
292
|
- test/rbbt/tsv/test_parallel.rb
|
|
289
293
|
- test/rbbt/tsv/test_parser.rb
|
|
294
|
+
- test/rbbt/tsv/test_stream.rb
|
|
290
295
|
- test/rbbt/tsv/test_util.rb
|
|
291
296
|
- test/rbbt/util/concurrency/processes/test_socket.rb
|
|
292
297
|
- test/rbbt/util/concurrency/test_processes.rb
|
|
293
298
|
- test/rbbt/util/concurrency/test_threads.rb
|
|
299
|
+
- test/rbbt/util/misc/test_pipes.rb
|
|
294
300
|
- test/rbbt/util/simpleopt/test_get.rb
|
|
295
301
|
- test/rbbt/util/simpleopt/test_parse.rb
|
|
296
302
|
- test/rbbt/util/simpleopt/test_setup.rb
|
|
@@ -347,6 +353,7 @@ test_files:
|
|
|
347
353
|
- test/rbbt/util/test_simpleDSL.rb
|
|
348
354
|
- test/rbbt/util/test_log.rb
|
|
349
355
|
- test/rbbt/util/test_open.rb
|
|
356
|
+
- test/rbbt/util/misc/test_pipes.rb
|
|
350
357
|
- test/rbbt/util/test_concurrency.rb
|
|
351
358
|
- test/rbbt/util/test_R.rb
|
|
352
359
|
- test/rbbt/util/test_colorize.rb
|
|
@@ -383,6 +390,7 @@ test_files:
|
|
|
383
390
|
- test/rbbt/tsv/test_index.rb
|
|
384
391
|
- test/rbbt/tsv/test_change_id.rb
|
|
385
392
|
- test/rbbt/tsv/test_parser.rb
|
|
393
|
+
- test/rbbt/tsv/test_stream.rb
|
|
386
394
|
- test/rbbt/tsv/test_util.rb
|
|
387
395
|
- test/rbbt/tsv/test_accessor.rb
|
|
388
396
|
- test/rbbt/tsv/test_filter.rb
|