rbbt-util 4.3.0 → 4.4.0

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@@ -17,6 +17,7 @@ row2 A B Id3
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  tsv = TSV.open(filename, :sep => /\s+/)
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  assert_equal 2, TSV.field_match_counts(tsv, ["a","A","a","b","Id3"])["ValueA"]
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+ assert_equal nil, TSV.field_match_counts(tsv, ["ValueA"])["ValueA"]
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  end
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@@ -4,6 +4,26 @@ require 'test/unit'
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  class TestMisc < Test::Unit::TestCase
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+ def test_fixutf8
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+ string = "abc\xffdef"
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+ string = string.force_encoding("UTF-8") if string.respond_to? :force_encoding
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+ assert(! string.valid_encoding?) if string.respond_to? :valid_encoding?
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+ assert(! string.valid_encoding) if string.respond_to? :valid_encoding
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+ assert( Misc.fixutf8(string).valid_encoding?) if string.respond_to? :valid_encoding?
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+ assert( Misc.fixutf8(string).valid_encoding) if string.respond_to? :valid_encoding
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+ end
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+
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+ def test_colors_for
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+ colors, used = Misc.colors_for([1,2,2,1,2,1,2,2,3,3,2,3,2])
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+ assert_equal Misc::COLOR_LIST[1], used[2]
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+ end
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+
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+ def test_total_length
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+ ranges = [(0..100), (50..150), (120..160)]
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+ ranges = [(0..100), (50..150), (120..160), (51..70)]
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+ assert_equal 161, Misc.total_length(ranges)
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+ end
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+
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  def test_id_filename?
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  TmpFile.with_file("") do |file|
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  assert Misc.is_filename?(file)
@@ -13,15 +13,13 @@ class TestOpen < Test::Unit::TestCase
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  def test_nice
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  nice = 0.5
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- Open.wget('http://google.com', :quiet => true, :nice => nice).read =~ /html/
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  t = Time.now
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- Open.wget('http://google.com', :quiet => true, :nice => nice).read =~ /html/
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+ Open.wget('http://google.com', :quiet => true, :nice => nice).read
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  assert(Time.now - t + 0.5 >= nice)
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- Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 1).read =~ /html/
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- Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 2).read =~ /html/
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+ Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 1).read
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  t = Time.now
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- Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 1).read =~ /html/
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+ Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 1).read
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  assert(Time.now - t + 0.5 >= nice)
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  end
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@@ -3,7 +3,7 @@ require 'rbbt/workflow/task'
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  require 'rbbt/workflow/step'
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  require 'rbbt'
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- class TestStrp < Test::Unit::TestCase
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+ class TestStep < Test::Unit::TestCase
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  def test_step
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  task = Task.setup do "TEST" end
@@ -86,7 +86,7 @@ class TestStrp < Test::Unit::TestCase
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  while not job.abort do sleep 1 end
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  Open.write(lock, "open")
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  job.join
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- assert job.error?
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+ assert job.aborted?
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  end
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  end
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  end
metadata CHANGED
@@ -1,13 +1,13 @@
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  --- !ruby/object:Gem::Specification
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  name: rbbt-util
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  version: !ruby/object:Gem::Version
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- hash: 51
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+ hash: 47
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  prerelease:
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  segments:
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  - 4
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- - 3
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+ - 4
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  - 0
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- version: 4.3.0
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+ version: 4.4.0
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  platform: ruby
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  authors:
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  - Miguel Vazquez
@@ -15,7 +15,7 @@ autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2012-01-31 00:00:00 Z
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+ date: 2012-07-18 00:00:00 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rake
@@ -129,6 +129,20 @@ dependencies:
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  version: "0"
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  type: :runtime
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  version_requirements: *id008
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+ - !ruby/object:Gem::Dependency
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+ name: simplews
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+ prerelease: false
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+ requirement: &id009 !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ hash: 3
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+ segments:
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+ - 0
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+ version: "0"
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+ type: :runtime
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+ version_requirements: *id009
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  description: Utilities for handling tsv files, caches, etc
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  email: miguel.vazquez@cnio.es
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  executables:
@@ -160,6 +174,7 @@ files:
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  - lib/rbbt/tsv/accessor.rb
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  - lib/rbbt/tsv/attach.rb
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  - lib/rbbt/tsv/attach/util.rb
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+ - lib/rbbt/tsv/excel.rb
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  - lib/rbbt/tsv/filter.rb
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  - lib/rbbt/tsv/index.rb
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  - lib/rbbt/tsv/manipulate.rb
@@ -191,9 +206,9 @@ files:
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  - test/test_helper.rb
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  - test/rbbt/util/test_tmpfile.rb
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  - test/rbbt/util/test_filecache.rb
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- - test/rbbt/util/test_open.rb
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- - test/rbbt/util/test_R.rb
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  - test/rbbt/util/test_misc.rb
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+ - test/rbbt/util/test_R.rb
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+ - test/rbbt/util/test_open.rb
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  - test/rbbt/util/test_cmd.rb
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  - test/rbbt/util/test_simpleDSL.rb
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  - test/rbbt/util/test_chain_methods.rb
@@ -251,7 +266,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  requirements: []
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  rubyforge_project:
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- rubygems_version: 1.8.12
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+ rubygems_version: 1.8.24
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  signing_key:
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  specification_version: 3
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  summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
@@ -259,9 +274,9 @@ test_files:
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  - test/test_helper.rb
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  - test/rbbt/util/test_tmpfile.rb
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  - test/rbbt/util/test_filecache.rb
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- - test/rbbt/util/test_open.rb
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- - test/rbbt/util/test_R.rb
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  - test/rbbt/util/test_misc.rb
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+ - test/rbbt/util/test_R.rb
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+ - test/rbbt/util/test_open.rb
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  - test/rbbt/util/test_cmd.rb
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  - test/rbbt/util/test_simpleDSL.rb
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  - test/rbbt/util/test_chain_methods.rb