rbbt-util 4.3.0 → 4.4.0

data/test/rbbt/tsv/test_util.rb

@@ -17,6 +17,7 @@ row2    A    B    Id3
       tsv = TSV.open(filename, :sep => /\s+/)
 
       assert_equal 2, TSV.field_match_counts(tsv, ["a","A","a","b","Id3"])["ValueA"]
+      assert_equal nil, TSV.field_match_counts(tsv, ["ValueA"])["ValueA"]
 
     end
   

data/test/rbbt/util/test_misc.rb

@@ -4,6 +4,26 @@ require 'test/unit'
 
 class TestMisc < Test::Unit::TestCase
 
+  def test_fixutf8
+    string = "abc\xffdef"
+    string = string.force_encoding("UTF-8") if string.respond_to? :force_encoding
+    assert(! string.valid_encoding?) if string.respond_to? :valid_encoding?
+    assert(! string.valid_encoding) if string.respond_to? :valid_encoding
+    assert( Misc.fixutf8(string).valid_encoding?) if string.respond_to? :valid_encoding?
+    assert( Misc.fixutf8(string).valid_encoding) if string.respond_to? :valid_encoding
+  end
+
+  def test_colors_for
+    colors, used = Misc.colors_for([1,2,2,1,2,1,2,2,3,3,2,3,2])
+    assert_equal Misc::COLOR_LIST[1], used[2]
+  end
+
+  def test_total_length
+    ranges = [(0..100), (50..150), (120..160)]
+    ranges = [(0..100), (50..150), (120..160), (51..70)]
+    assert_equal 161, Misc.total_length(ranges)
+  end
+
   def test_id_filename?
     TmpFile.with_file("") do |file|
       assert Misc.is_filename?(file)

data/test/rbbt/util/test_open.rb

@@ -13,15 +13,13 @@ class TestOpen < Test::Unit::TestCase
   def test_nice
     nice =  0.5
 
-    Open.wget('http://google.com', :quiet => true, :nice => nice).read =~ /html/
     t = Time.now
-    Open.wget('http://google.com', :quiet => true, :nice => nice).read =~ /html/
+    Open.wget('http://google.com', :quiet => true, :nice => nice).read
     assert(Time.now - t + 0.5 >= nice)
 
-    Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 1).read =~ /html/
-    Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 2).read =~ /html/
+    Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 1).read
     t = Time.now
-    Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 1).read =~ /html/
+    Open.wget('http://google.com', :quiet => true, :nice => nice, :nice_key => 1).read
     assert(Time.now - t + 0.5 >= nice)
   end
 

data/test/rbbt/workflow/test_step.rb

@@ -3,7 +3,7 @@ require 'rbbt/workflow/task'
 require 'rbbt/workflow/step'
 require 'rbbt'
 
-class TestStrp < Test::Unit::TestCase
+class TestStep < Test::Unit::TestCase
 
   def test_step
     task  = Task.setup do "TEST" end
@@ -86,7 +86,7 @@ class TestStrp < Test::Unit::TestCase
         while not job.abort do sleep 1 end
         Open.write(lock, "open")
         job.join
-        assert job.error?
+        assert job.aborted?
       end
     end
   end

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: rbbt-util
 version: !ruby/object:Gem::Version 
-  hash: 51
+  hash: 47
   prerelease: 
   segments: 
   - 4
-  - 3
+  - 4
   - 0
-  version: 4.3.0
+  version: 4.4.0
 platform: ruby
 authors: 
 - Miguel Vazquez
@@ -15,7 +15,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2012-01-31 00:00:00 Z
+date: 2012-07-18 00:00:00 Z
 dependencies: 
 - !ruby/object:Gem::Dependency 
   name: rake
@@ -129,6 +129,20 @@ dependencies:
         version: "0"
   type: :runtime
   version_requirements: *id008
+- !ruby/object:Gem::Dependency 
+  name: simplews
+  prerelease: false
+  requirement: &id009 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :runtime
+  version_requirements: *id009
 description: Utilities for handling tsv files, caches, etc
 email: miguel.vazquez@cnio.es
 executables: 
@@ -160,6 +174,7 @@ files:
 - lib/rbbt/tsv/accessor.rb
 - lib/rbbt/tsv/attach.rb
 - lib/rbbt/tsv/attach/util.rb
+- lib/rbbt/tsv/excel.rb
 - lib/rbbt/tsv/filter.rb
 - lib/rbbt/tsv/index.rb
 - lib/rbbt/tsv/manipulate.rb
@@ -191,9 +206,9 @@ files:
 - test/test_helper.rb
 - test/rbbt/util/test_tmpfile.rb
 - test/rbbt/util/test_filecache.rb
-- test/rbbt/util/test_open.rb
-- test/rbbt/util/test_R.rb
 - test/rbbt/util/test_misc.rb
+- test/rbbt/util/test_R.rb
+- test/rbbt/util/test_open.rb
 - test/rbbt/util/test_cmd.rb
 - test/rbbt/util/test_simpleDSL.rb
 - test/rbbt/util/test_chain_methods.rb
@@ -251,7 +266,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
 requirements: []
 
 rubyforge_project: 
-rubygems_version: 1.8.12
+rubygems_version: 1.8.24
 signing_key: 
 specification_version: 3
 summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
@@ -259,9 +274,9 @@ test_files:
 - test/test_helper.rb
 - test/rbbt/util/test_tmpfile.rb
 - test/rbbt/util/test_filecache.rb
-- test/rbbt/util/test_open.rb
-- test/rbbt/util/test_R.rb
 - test/rbbt/util/test_misc.rb
+- test/rbbt/util/test_R.rb
+- test/rbbt/util/test_open.rb
 - test/rbbt/util/test_cmd.rb
 - test/rbbt/util/test_simpleDSL.rb
 - test/rbbt/util/test_chain_methods.rb