rbbt-util 4.1.0 → 4.2.0
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- data/bin/run_workflow.rb +4 -1
- data/lib/rbbt/annotations.rb +138 -53
- data/lib/rbbt/persist.rb +30 -12
- data/lib/rbbt/persist/tsv.rb +1 -1
- data/lib/rbbt/resource/path.rb +1 -1
- data/lib/rbbt/tsv.rb +7 -1
- data/lib/rbbt/tsv/accessor.rb +21 -16
- data/lib/rbbt/tsv/attach/util.rb +1 -10
- data/lib/rbbt/tsv/manipulate.rb +21 -3
- data/lib/rbbt/tsv/parser.rb +24 -5
- data/lib/rbbt/tsv/util.rb +1 -1
- data/lib/rbbt/util/chain_methods.rb +12 -23
- data/lib/rbbt/util/misc.rb +133 -144
- data/lib/rbbt/util/named_array.rb +113 -0
- data/lib/rbbt/util/open.rb +17 -10
- data/lib/rbbt/workflow/accessor.rb +9 -1
- data/lib/rbbt/workflow/step.rb +9 -7
- data/share/lib/R/util.R +28 -6
- data/test/rbbt/test_annotations.rb +16 -2
- data/test/rbbt/test_persist.rb +37 -1
- data/test/rbbt/test_tsv.rb +12 -0
- data/test/rbbt/tsv/test_attach.rb +1 -1
- data/test/rbbt/util/test_chain_methods.rb +1 -1
- data/test/rbbt/util/test_misc.rb +10 -0
- metadata +5 -4
data/test/rbbt/util/test_misc.rb
CHANGED
@@ -96,6 +96,7 @@ class TestMisc < Test::Unit::TestCase
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96
96
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a = [[1],[2]]
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97
97
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a = NamedArray.setup a, %w(1 2)
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98
98
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a.merge [3,4]
|
99
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+
ddd a
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99
100
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assert_equal [1,3], a[0]
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100
101
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end
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101
102
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@@ -141,6 +142,15 @@ class TestMisc < Test::Unit::TestCase
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141
142
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assert_equal nil, inputs[:four]
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142
143
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end
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143
144
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|
145
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+
def test_mean
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146
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+
assert_equal 2, Misc.mean([1,2,3])
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147
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+
assert_equal 3, Misc.mean([1,2,3,4,5])
|
148
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+
end
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149
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+
|
150
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+
def __test_sd
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151
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+
assert_equal Math.sqrt(2), Misc.sd([1,3])
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152
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+
end
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153
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+
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144
154
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# def test_divide
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145
155
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# assert_equal 2, Misc.divide(%w(1 2 3 4 5 6 7 8 9),2).length
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146
156
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# end
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metadata
CHANGED
@@ -1,13 +1,13 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: rbbt-util
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3
3
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version: !ruby/object:Gem::Version
|
4
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-
hash:
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4
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+
hash: 55
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5
5
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prerelease:
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6
6
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segments:
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7
7
|
- 4
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8
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-
-
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8
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+
- 2
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9
9
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- 0
|
10
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-
version: 4.
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10
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+
version: 4.2.0
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11
11
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platform: ruby
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12
12
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authors:
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13
13
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- Miguel Vazquez
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@@ -15,7 +15,7 @@ autorequire:
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15
15
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bindir: bin
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16
16
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cert_chain: []
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17
17
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|
18
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-
date:
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18
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+
date: 2012-01-13 00:00:00 +01:00
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19
19
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default_executable:
|
20
20
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dependencies:
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21
21
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- !ruby/object:Gem::Dependency
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@@ -160,6 +160,7 @@ files:
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160
160
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- lib/rbbt/util/filecache.rb
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161
161
|
- lib/rbbt/util/log.rb
|
162
162
|
- lib/rbbt/util/misc.rb
|
163
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+
- lib/rbbt/util/named_array.rb
|
163
164
|
- lib/rbbt/util/open.rb
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164
165
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- lib/rbbt/util/simpleDSL.rb
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165
166
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- lib/rbbt/util/simpleopt.rb
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