rbbt-util 1.0.1

data/test/test_rbbt.rb

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+require File.expand_path(File.dirname(__FILE__) + '/test_helper')
+require 'rbbt'
+require 'rbbt/util/misc'
+require 'rbbt/util/open'
+
+class TestRbbt < Test::Unit::TestCase
+  def test_url
+    Rbbt.add_datafiles :test => ['test', 'http://google.com']
+    assert(Misc.fixutf8(File.open(Rbbt.find_datafile('test')).read) =~ /html/)
+    FileUtils.rm_rf File.dirname(Rbbt.find_datafile('test'))
+  end
+
+  def test_proc
+    Rbbt.add_datafiles :test => ['test', proc{'test'}]
+    assert(Open.read(Rbbt.find_datafile('test')) == 'test')
+    FileUtils.rm_rf File.dirname(Rbbt.find_datafile('test'))
+  end
+
+  def test_Rakefile
+    sharedir = PKGData.sharedir_for_file(__FILE__)
+    
+    FileUtils.rmtree  File.join(Rbbt.datadir, 'rake')
+    FileUtils.mkdir_p File.join(sharedir, 'install', 'rake')
+    File.open(File.join(sharedir, 'install', 'rake', 'Rakefile'), 'w') do |f|
+      f.puts "task :default do File.open('foo', 'w') do |f| f.puts 'bar' end end"
+    end
+
+    Rbbt.add_datafiles :rake => ['', 'rake']
+
+    assert_equal 'bar', Open.read(File.join(Rbbt.datadir, 'rake', 'foo')).chomp
+
+    FileUtils.rmtree  File.join(sharedir, 'install', 'rake')
+    FileUtils.rmtree  File.join(Rbbt.datadir, 'rake')
+  end
+
+  def test_Rakefile_with_file
+    sharedir = PKGData.sharedir_for_file(__FILE__)
+    
+    FileUtils.mkdir_p File.join(sharedir, 'install', 'rake')
+    File.open(File.join(sharedir, 'install', 'rake', 'Rakefile'), 'w') do |f|
+      f.puts "\
+task :default do File.open('foo', 'w') do |f| f.puts 'bar' end end
+task 'file1' do |t| File.open(t.name, 'w') do |f| f.puts 'file 1' end end
+      "
+    end
+
+    Rbbt.add_datafiles 'rake/file1' => ['', 'rake']
+
+    assert(! File.exists?(File.join(Rbbt.datadir, 'rake', 'foo')))
+    assert(File.exists?(File.join(Rbbt.datadir, 'rake', 'file1')))
+    assert_equal('file 1', Open.read(File.join(Rbbt.datadir, 'rake', 'file1')).chomp)
+    assert_equal('file 1', Open.read(Rbbt.find_datafile('rake/file1')).chomp)
+
+    FileUtils.rm_rf  File.join(sharedir, 'install', 'rake')
+    FileUtils.rm_rf  File.join(Rbbt.datadir, 'rake')
+  end
+
+  def test_xclip
+    sharedir = PKGData.sharedir_for_file(__FILE__)
+  
+    File.open(File.join(sharedir, 'install', 'software', 'xclip'), 'w') do |f|
+      f.puts '#!/bin/bash
+
+INSTALL_HELPER_FILE="$1"
+RBBT_SOFTWARE_DIR="$2"
+source "$INSTALL_HELPER_FILE"
+
+name="xclip:0.12"
+url="http://downloads.sourceforge.net/project/xclip/xclip/0.12/xclip-0.12.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fxclip%2F&ts=1286472387&use_mirror=sunet"
+
+install_src "$name" "$url"
+      '
+    end
+    FileUtils.chmod 0774, File.join(sharedir, 'install', 'software', 'xclip')
+
+    Rbbt.add_software :xclip => ['','']
+    Rbbt.find_software :xclip
+    assert File.exists? File.join(Rbbt.bin_dir, 'xclip')
+
+    FileUtils.rm_rf  File.join(sharedir, 'install', 'software', 'xclip')
+    Dir.glob(File.join(Rbbt.datadir, 'software', 'opt', 'xclip','bin/*')).each do |exe|
+      FileUtils.rm_rf  File.join(Rbbt.datadir, 'software', 'opt', 'bin', File.basename(exe))
+    end
+    Dir.glob(File.join(Rbbt.datadir, 'software', 'opt', 'xclip','current', 'bin/*')).each do |exe|
+      FileUtils.rm_rf  File.join(Rbbt.datadir, 'software', 'opt', 'bin', File.basename(exe))
+    end
+    FileUtils.rm_rf  File.join(Rbbt.datadir, 'software', 'opt', 'xclip')
+  end
+
+end

metadata

@@ -0,0 +1,185 @@
+--- !ruby/object:Gem::Specification 
+name: rbbt-util
+version: !ruby/object:Gem::Version 
+  hash: 21
+  prerelease: false
+  segments: 
+  - 1
+  - 0
+  - 1
+  version: 1.0.1
+platform: ruby
+authors: 
+- Miguel Vazquez
+autorequire: 
+bindir: bin
+cert_chain: []
+
+date: 2010-12-14 00:00:00 +01:00
+default_executable: 
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: rake
+  prerelease: false
+  requirement: &id001 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :runtime
+  version_requirements: *id001
+- !ruby/object:Gem::Dependency 
+  name: spreadsheet
+  prerelease: false
+  requirement: &id002 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :runtime
+  version_requirements: *id002
+- !ruby/object:Gem::Dependency 
+  name: ruby-prof
+  prerelease: false
+  requirement: &id003 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :runtime
+  version_requirements: *id003
+- !ruby/object:Gem::Dependency 
+  name: tokyocabinet
+  prerelease: false
+  requirement: &id004 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :runtime
+  version_requirements: *id004
+- !ruby/object:Gem::Dependency 
+  name: progress-monitor
+  prerelease: false
+  requirement: &id005 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :runtime
+  version_requirements: *id005
+description: Utilities for handling tsv files, caches, etc
+email: miguel.vazquez@fdi.ucm.es
+executables: 
+- tsv.rb
+- tchash.rb
+extensions: []
+
+extra_rdoc_files: 
+- LICENSE
+files: 
+- LICENSE
+- lib/rbbt-util.rb
+- lib/rbbt.rb
+- lib/rbbt/util/cachehelper.rb
+- lib/rbbt/util/cmd.rb
+- lib/rbbt/util/data_module.rb
+- lib/rbbt/util/excel2tsv.rb
+- lib/rbbt/util/filecache.rb
+- lib/rbbt/util/log.rb
+- lib/rbbt/util/misc.rb
+- lib/rbbt/util/open.rb
+- lib/rbbt/util/pkg_config.rb
+- lib/rbbt/util/pkg_data.rb
+- lib/rbbt/util/pkg_software.rb
+- lib/rbbt/util/simpleDSL.rb
+- lib/rbbt/util/simpleopt.rb
+- lib/rbbt/util/tc_hash.rb
+- lib/rbbt/util/tmpfile.rb
+- lib/rbbt/util/tsv.rb
+- share/install/software/lib/install_helpers
+- test/rbbt/util/test_cmd.rb
+- test/rbbt/util/test_data_module.rb
+- test/rbbt/util/test_excel2tsv.rb
+- test/rbbt/util/test_filecache.rb
+- test/rbbt/util/test_misc.rb
+- test/rbbt/util/test_open.rb
+- test/rbbt/util/test_simpleDSL.rb
+- test/rbbt/util/test_simpleopt.rb
+- test/rbbt/util/test_tc_hash.rb
+- test/rbbt/util/test_tmpfile.rb
+- test/rbbt/util/test_tsv.rb
+- test/test_helper.rb
+- test/test_pkg.rb
+- test/test_rbbt.rb
+- bin/tsv.rb
+- bin/tchash.rb
+has_rdoc: true
+homepage: http://github.com/mikisvaz/rbbt-util
+licenses: []
+
+post_install_message: 
+rdoc_options: []
+
+require_paths: 
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
+requirements: []
+
+rubyforge_project: 
+rubygems_version: 1.3.7
+signing_key: 
+specification_version: 3
+summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
+test_files: 
+- test/rbbt/util/test_cmd.rb
+- test/rbbt/util/test_data_module.rb
+- test/rbbt/util/test_excel2tsv.rb
+- test/rbbt/util/test_filecache.rb
+- test/rbbt/util/test_misc.rb
+- test/rbbt/util/test_open.rb
+- test/rbbt/util/test_simpleDSL.rb
+- test/rbbt/util/test_simpleopt.rb
+- test/rbbt/util/test_tc_hash.rb
+- test/rbbt/util/test_tmpfile.rb
+- test/rbbt/util/test_tsv.rb
+- test/test_helper.rb
+- test/test_pkg.rb
+- test/test_rbbt.rb