rbbt-util 1.0.1 → 1.1.0

data/lib/rbbt/util/workflow.rb

@@ -0,0 +1,4 @@
+require 'tsv'
+
+module WorkFlow
+end

data/test/rbbt/util/test_cmd.rb

@@ -27,4 +27,18 @@ class TestCmd < Test::Unit::TestCase
     assert_equal("test2\n", CMD.cmd("cut", "-f" => 2, "-d" => '" "', :in => "test1 test2", :pipe => true).read)
   end
 
+  def test_error
+    assert_raise CMD::CMDError do CMD.cmd('fake-command') end
+    assert_raise CMD::CMDError do CMD.cmd('ls -fake_option') end
+
+    assert_raise CMD::CMDError do CMD.cmd('fake-command', :stderr => true) end
+    assert_raise CMD::CMDError do CMD.cmd('ls -fake_option', :stderr => true) end
+ 
+    assert_nothing_raised CMD::CMDError do CMD.cmd('fake-command', :stderr => false, :pipe => true) end
+    assert_nothing_raised CMD::CMDError do CMD.cmd('ls -fake_option', :stderr => false, :pipe => true) end
+ 
+    assert_raise CMD::CMDError do CMD.cmd('fake-command', :stderr => true, :pipe => true).read end
+    assert_raise CMD::CMDError do CMD.cmd('ls -fake_option', :stderr => true, :pipe => true).read end
+  end
+
 end

data/test/rbbt/util/test_misc.rb

@@ -4,6 +4,18 @@ require 'test/unit'
 
 class TestMisc < Test::Unit::TestCase
 
+  def test_pdf2text_example
+    assert PDF2Text.pdf2text(test_datafile('example.pdf')).read =~ /An Example Paper/i
+  end
+
+  def test_pdf2text_EPAR
+    assert PDF2Text.pdf2text("http://www.ema.europa.eu/docs/en_GB/document_library/EPAR_-_Scientific_Discussion/human/000402/WC500033103.pdf").read =~ /Tamiflu/i
+  end
+
+  def test_pdf2text_wrong
+    assert_raise CMD::CMDError do PDF2Text.pdf2text("http://www.ema.europa.eu/docs/en_GB#") end
+  end
+
   def test_string2hash
     assert(Misc.string2hash("--user-agent=firefox").include? "--user-agent")
     assert(Misc.string2hash(":true")[:true] == true)

data/test/rbbt/util/test_tc_hash.rb

@@ -10,7 +10,7 @@ class TestTCHash < Test::Unit::TestCase
       t["2"] = 3
 
       t.collect do |k,v| 
-        puts k 
+        ["1", "2"].include? k 
       end
     end
   end

data/test/rbbt/util/test_tsv.rb

@@ -648,5 +648,115 @@ row3    a    C    Id4
       assert_equal ["Pref:A"], tsv["row2"]["ValueA"]
     end
   end
+
+  def test_open_stringoptions
+     content =<<-EOF
+#Id    ValueA    ValueB    OtherID
+row1    a|aa|aaa    b    Id1|Id2
+row2    A    B    Id3
+row3    a    C    Id4
+    EOF
+
+    TmpFile.with_file(content) do |filename|
+      tsv = TSV.new(filename + '#:sep=/\s+/')
+
+      tsv.process "ValueA" do |field_values,key,values|
+        field_values.collect{|v| "Pref:#{v}"}
+      end
+
+      assert_equal ["Pref:A"], tsv["row2"]["ValueA"]
+    end
+  end
+
+  def test_select
+     content =<<-EOF
+#Id    ValueA    ValueB    OtherID
+row1    a|aa|aaa    b    Id1|Id2
+row2    A    B    Id3
+row3    a    C    Id4
+    EOF
+
+    TmpFile.with_file(content) do |filename|
+      tsv = TSV.new(filename + '#:sep=/\s+/')
+      assert tsv.list
+      
+      new = tsv.select %w(b Id4)
+      assert_equal %w(row1 row3).sort, new.keys
+
+      new = tsv.select "ValueB" => %w(b Id4)
+      assert_equal %w(row1).sort, new.keys
+
+      new = tsv.select /b|Id4/
+      assert_equal %w(row1 row3).sort, new.keys
+
+      new = tsv.select "ValueB" => /b|Id4/
+      assert_equal %w(row1).sort, new.keys
+
+      tsv = TSV.new(filename + '#:sep=/\s+/#:unique')
+      assert ! tsv.list
+      
+      new = tsv.select %w(b Id4)
+    end
+  end
+
+  def test_field_compare
+     content =<<-EOF
+#Id    LetterValue#ValueA    LetterValue#ValueB    OtherID
+row1    a|aa|aaa    b    Id1|Id2
+row2    A    B    Id3
+row3    a    C    Id4
+    EOF
+    
+    TmpFile.with_file(content) do |filename|
+      tsv = TSV.new(filename + '#:sep=/\s+/')
+
+      assert tsv.fields.include?("LetterValue")
+    end
+  end
+
+  def test_add_field
+     content =<<-EOF
+#Id    LetterValue#ValueA    LetterValue#ValueB    OtherID
+row1    a|aa|aaa    b    Id1|Id2
+row2    A    B    Id3
+row3    a    C    Id4
+    EOF
+ 
+    TmpFile.with_file(content) do |filename|
+      tsv = TSV.new(filename + '#:sep=/\s+/')
+      tsv.add_field "Str length" do |k,v| 
+        (v.flatten * " ").length 
+      end
+      
+
+      assert tsv.fields.include?("Str length")
+    end
+ 
+  end
+
+  def test_tsv_cache
+      content =<<-EOF
+#Id    LetterValue#ValueA    LetterValue#ValueB    OtherID
+row1    a|aa|aaa    b    Id1|Id2
+row2    A    B    Id3
+row3    a    C    Id4
+    EOF
+ 
+    TmpFile.with_file(content) do |filename|
+      tsv = CacheHelper.tsv_cache('test_tsv_cache', filename) do 
+        TSV.new(filename + '#:sep=/\s+/')
+      end
+      tsv
+      
+      tsv1 = CacheHelper.tsv_cache('test_tsv_cache', filename) do 
+        assert false
+      end
+
+      assert_equal tsv.fields, tsv1.fields
+      
+      CacheHelper.clean 'test_tsv_cache'
+    end
+
+ end
 end
 

data/test/rbbt/util/test_workflow.rb

@@ -0,0 +1,11 @@
+require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
+require 'rbbt/util/tsv'
+require 'rbbt/util/tmpfile'
+
+class TestTSV < Test::Unit::TestCase
+
+  def test_add_column
+  end
+
+end
+

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: rbbt-util
 version: !ruby/object:Gem::Version 
-  hash: 21
+  hash: 19
   prerelease: false
   segments: 
   - 1
-  - 0
   - 1
-  version: 1.0.1
+  - 0
+  version: 1.1.0
 platform: ruby
 authors: 
 - Miguel Vazquez
@@ -15,7 +15,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-12-14 00:00:00 +01:00
+date: 2010-12-20 00:00:00 +01:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -117,6 +117,7 @@ files:
 - lib/rbbt/util/tc_hash.rb
 - lib/rbbt/util/tmpfile.rb
 - lib/rbbt/util/tsv.rb
+- lib/rbbt/util/workflow.rb
 - share/install/software/lib/install_helpers
 - test/rbbt/util/test_cmd.rb
 - test/rbbt/util/test_data_module.rb
@@ -129,6 +130,7 @@ files:
 - test/rbbt/util/test_tc_hash.rb
 - test/rbbt/util/test_tmpfile.rb
 - test/rbbt/util/test_tsv.rb
+- test/rbbt/util/test_workflow.rb
 - test/test_helper.rb
 - test/test_pkg.rb
 - test/test_rbbt.rb
@@ -180,6 +182,7 @@ test_files:
 - test/rbbt/util/test_tc_hash.rb
 - test/rbbt/util/test_tmpfile.rb
 - test/rbbt/util/test_tsv.rb
+- test/rbbt/util/test_workflow.rb
 - test/test_helper.rb
 - test/test_pkg.rb
 - test/test_rbbt.rb