rbbt-study 0.2.14 → 0.2.15
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +8 -8
- data/lib/rbbt/entity/study/genotypes/knowledge_base.rb +3 -3
- metadata +2 -2
checksums.yaml
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@@ -1,15 +1,15 @@
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!binary "U0hBMQ==":
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metadata.gz: !binary |-
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ZGY5MzgxZjY2ZDhmYWFlOGQ1N2E3MzI0N2EwY2ZhNTJkODk3OTUzNQ==
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data.tar.gz: !binary |-
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MDJlODFiODE0ZDM1NzcxYzIyZDU5YzhlZGQ5ZjdlZGQ5YmIxYzVhOQ==
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SHA512:
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metadata.gz: !binary |-
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MTVmNGJhYjE0ZThkMjE0MzVmMGJkOThhOGVhNGJlODdjYWE5MzM=
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data.tar.gz: !binary |-
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OGE4NjZhOGRlZjUzMTFhYWJhYjE0MGFhMTg2MjQyYjllMGM5NzU=
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@@ -27,10 +27,10 @@ module Study
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sample_mutations = study.knowledge_base.get_database(:sample_mutations, :source => "Sample")
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all_mutations = study.all_mutations
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mutations2mutated_isoforms = Misc.process_to_hash(all_mutations){|mutations| mutations.any? ? mutations.mutated_isoforms : [] }
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mutations2exon_junction = Misc.process_to_hash(all_mutations){|mutations| mutations.in_exon_junction? }
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mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.damaged? }
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mutations2exon_junction = Misc.process_to_hash(all_mutations){|mutations| mutations.any? ? mutations.in_exon_junction? : [] }
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mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.any? ? mis.damaged? : [] }
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#mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| [false] * mis.length }
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mi2consequence = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.consequence }
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mi2consequence = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.any? ? mis.consequence : [] }
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gene_mutations = study.knowledge_base.get_database(:mutation_genes, :source => "Ensembl Gene ID")
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gene_mutations.unnamed = true
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metadata
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--- !ruby/object:Gem::Specification
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name: rbbt-study
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version: !ruby/object:Gem::Version
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version: 0.2.
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version: 0.2.15
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2013-11-
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date: 2013-11-23 00:00:00.000000000 Z
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dependencies: []
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description: This gem add the study entity with suport for NGS, Microarray and other
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types of data
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