rbbt-study 0.2.14 → 0.2.15
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- checksums.yaml +8 -8
- data/lib/rbbt/entity/study/genotypes/knowledge_base.rb +3 -3
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,15 +1,15 @@
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1
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---
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!binary "U0hBMQ==":
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metadata.gz: !binary |-
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4
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-
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4
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+
ZGY5MzgxZjY2ZDhmYWFlOGQ1N2E3MzI0N2EwY2ZhNTJkODk3OTUzNQ==
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5
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data.tar.gz: !binary |-
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6
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-
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6
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+
MDJlODFiODE0ZDM1NzcxYzIyZDU5YzhlZGQ5ZjdlZGQ5YmIxYzVhOQ==
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7
7
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SHA512:
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metadata.gz: !binary |-
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-
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-
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11
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-
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9
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+
ODY5Zjk0NThjNjZmNTMxYmUzOTNhODRmZDQ0OTdiYTk3OWJiZGY3ZjA4MjY0
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10
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+
NzNiZWU3ZTllZDNlMDczMzczNzk1NTZlZWVhNTQ2ZGNmY2NkNzM0NjQ0Y2I5
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11
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+
MTVmNGJhYjE0ZThkMjE0MzVmMGJkOThhOGVhNGJlODdjYWE5MzM=
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data.tar.gz: !binary |-
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-
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-
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15
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-
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13
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+
OWU0NDZlOWYzOTM5NzVjODg4YjVmZmJjYWY2NTY1YjNmOTkzYjQwNDcxYmM4
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14
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+
YWM2ZWNhZDhjZmI0MjE5ZjJhMWQxNmQ4N2RiYjNkZTNiYTdlNjhhODMwM2Jk
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15
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+
OGE4NjZhOGRlZjUzMTFhYWJhYjE0MGFhMTg2MjQyYjllMGM5NzU=
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@@ -27,10 +27,10 @@ module Study
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sample_mutations = study.knowledge_base.get_database(:sample_mutations, :source => "Sample")
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all_mutations = study.all_mutations
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mutations2mutated_isoforms = Misc.process_to_hash(all_mutations){|mutations| mutations.any? ? mutations.mutated_isoforms : [] }
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-
mutations2exon_junction = Misc.process_to_hash(all_mutations){|mutations| mutations.in_exon_junction? }
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31
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-
mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.damaged? }
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+
mutations2exon_junction = Misc.process_to_hash(all_mutations){|mutations| mutations.any? ? mutations.in_exon_junction? : [] }
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+
mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.any? ? mis.damaged? : [] }
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#mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| [false] * mis.length }
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-
mi2consequence = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.consequence }
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+
mi2consequence = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.any? ? mis.consequence : [] }
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gene_mutations = study.knowledge_base.get_database(:mutation_genes, :source => "Ensembl Gene ID")
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gene_mutations.unnamed = true
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-study
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version: !ruby/object:Gem::Version
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-
version: 0.2.
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version: 0.2.15
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2013-11-
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+
date: 2013-11-23 00:00:00.000000000 Z
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dependencies: []
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description: This gem add the study entity with suport for NGS, Microarray and other
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types of data
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