rbbt-study 0.2.13 → 0.2.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +8 -8
- data/lib/rbbt/entity/study/genotypes/knowledge_base.rb +2 -2
- metadata +2 -2
checksums.yaml
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@@ -1,15 +1,15 @@
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---
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!binary "U0hBMQ==":
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metadata.gz: !binary |-
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Njk5Mjc3YjI3NDY0ZTVkNTVmNDJlZjgzN2I2ZDY0OGI4YTU4NWVlMg==
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data.tar.gz: !binary |-
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MjE3YTg0YjcxYTY1M2Q5NDBkNzJjYTVlMjdiNDY1NTUxZmI0ODEwYw==
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SHA512:
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metadata.gz: !binary |-
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OGQzYmY2MzgwY2M1MGM3MzIyZWQxZjA2MWM1Mjc0YmE1OWM1ZGIxZGI4Y2M5
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MjIxZDhlNGViODc1YWI1MGFiYTliNDYxYmU1NGEzZTc2Y2E2YjUwZWQ2ZGUz
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MjNjYTdkOTFiMjhkZjI0ZjcyOTMzNDhjODY0ODc0NGNjYzU5ZDA=
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data.tar.gz: !binary |-
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YjAyNDA2ODliYTcxMTQzMzFjZmIxODMwNjUyNzNjNTFkZTU5ZmM=
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@@ -28,8 +28,8 @@ module Study
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all_mutations = study.all_mutations
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mutations2mutated_isoforms = Misc.process_to_hash(all_mutations){|mutations| mutations.any? ? mutations.mutated_isoforms : [] }
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mutations2exon_junction = Misc.process_to_hash(all_mutations){|mutations| mutations.in_exon_junction? }
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mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| [false] * mis.length }
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mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.damaged? }
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#mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| [false] * mis.length }
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mi2consequence = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.consequence }
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gene_mutations = study.knowledge_base.get_database(:mutation_genes, :source => "Ensembl Gene ID")
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metadata
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--- !ruby/object:Gem::Specification
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name: rbbt-study
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version: !ruby/object:Gem::Version
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version: 0.2.
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version: 0.2.14
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2013-11-
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date: 2013-11-20 00:00:00.000000000 Z
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dependencies: []
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description: This gem add the study entity with suport for NGS, Microarray and other
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types of data
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