rbbt-study 0.2.13 → 0.2.14
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- checksums.yaml +8 -8
- data/lib/rbbt/entity/study/genotypes/knowledge_base.rb +2 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,15 +1,15 @@
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1
1
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---
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!binary "U0hBMQ==":
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metadata.gz: !binary |-
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4
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-
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4
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+
Njk5Mjc3YjI3NDY0ZTVkNTVmNDJlZjgzN2I2ZDY0OGI4YTU4NWVlMg==
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5
5
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data.tar.gz: !binary |-
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6
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-
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6
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+
MjE3YTg0YjcxYTY1M2Q5NDBkNzJjYTVlMjdiNDY1NTUxZmI0ODEwYw==
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7
7
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SHA512:
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metadata.gz: !binary |-
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9
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-
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-
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11
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-
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9
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+
OGQzYmY2MzgwY2M1MGM3MzIyZWQxZjA2MWM1Mjc0YmE1OWM1ZGIxZGI4Y2M5
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10
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+
MjIxZDhlNGViODc1YWI1MGFiYTliNDYxYmU1NGEzZTc2Y2E2YjUwZWQ2ZGUz
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11
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+
MjNjYTdkOTFiMjhkZjI0ZjcyOTMzNDhjODY0ODc0NGNjYzU5ZDA=
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data.tar.gz: !binary |-
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13
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-
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14
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-
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15
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-
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13
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+
N2E3ODJiYWQwOWVmM2ZkYmY1ZTgyNTExYzYxZmE3NjUxYmViNGVjNWM3YzJk
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14
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+
M2MxMGU5ZjU4Y2I0MzNjNjg3ZjY3ZGVlZTk3YjBjZDI3ODA5MDNiODZiMzAw
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15
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+
YjAyNDA2ODliYTcxMTQzMzFjZmIxODMwNjUyNzNjNTFkZTU5ZmM=
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@@ -28,8 +28,8 @@ module Study
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all_mutations = study.all_mutations
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mutations2mutated_isoforms = Misc.process_to_hash(all_mutations){|mutations| mutations.any? ? mutations.mutated_isoforms : [] }
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mutations2exon_junction = Misc.process_to_hash(all_mutations){|mutations| mutations.in_exon_junction? }
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-
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-
mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| [false] * mis.length }
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31
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+
mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.damaged? }
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32
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+
#mi2damaged = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| [false] * mis.length }
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mi2consequence = Misc.process_to_hash(MutatedIsoform.setup(mutations2mutated_isoforms.values.flatten.compact.uniq, study.organism)){|mis| mis.consequence }
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gene_mutations = study.knowledge_base.get_database(:mutation_genes, :source => "Ensembl Gene ID")
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: rbbt-study
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version: !ruby/object:Gem::Version
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-
version: 0.2.
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version: 0.2.14
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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11
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-
date: 2013-11-
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+
date: 2013-11-20 00:00:00.000000000 Z
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dependencies: []
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description: This gem add the study entity with suport for NGS, Microarray and other
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types of data
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