rbbt-study 0.2.7 → 0.2.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +9 -9
- data/lib/rbbt/entity/study.rb +1 -5
- data/lib/rbbt/entity/study/samples.rb +30 -12
- metadata +5 -5
checksums.yaml
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!binary "U0hBMQ==":
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metadata.gz: !binary |-
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data.tar.gz: !binary |-
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metadata.gz: !binary |-
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data.tar.gz: !binary |-
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MzQ2MzAwMjM2NTc4YzNjOGY3OWQwM2FiZDExZDU5N2UzMzQwYzM=
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data/lib/rbbt/entity/study.rb
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@@ -103,11 +103,7 @@ module Study
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end
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def dir
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-
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@dir = Path.setup(File.join(Study.study_dir, self))
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@dir.resource = Study
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-
end
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@dir
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@dir ||= Path === Study.study_dir ? Study.study_dir[self] : Path.setup(File.join(Study.study_dir, self), nil, Study)
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end
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def metadata
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module Study
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end
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module Sample
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extend Entity
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def study
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@study ||= begin
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-
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study = info[:study]
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if study.nil?
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study = Study.identify_study(self)
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self.study = study
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end
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study
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end
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end
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end
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def samples
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@samples ||= begin
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samples = local_persist("Sample", :array) do
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if sample_info.nil?
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self.cohort.collect{|g| g.jobname }
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else
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sample_info.keys
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end
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end
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Sample.setup(samples, self)
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samples.study = self
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samples
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end
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end
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def match_samples(list)
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end
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list
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end
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def self.identify_study(samples)
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samples = Array === samples ? samples.flatten : [samples]
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studies = Study.studies.select{|study| Study.setup(study); (study.samples & samples).any? }
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return nil if studies.length != 1
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studies.first
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end
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: rbbt-study
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version: !ruby/object:Gem::Version
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version: 0.2.
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version: 0.2.8
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2013-11-
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date: 2013-11-07 00:00:00.000000000 Z
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dependencies: []
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description: This gem add the study entity with suport for NGS, Microarray and other
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types of data
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@@ -19,6 +19,8 @@ extra_rdoc_files:
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- LICENSE.txt
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- README.rdoc
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files:
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- LICENSE.txt
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- README.rdoc
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- lib/rbbt/entity/study.rb
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- lib/rbbt/entity/study/cnv.rb
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- lib/rbbt/entity/study/cnv/genes.rb
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- lib/rbbt/entity/study/plots.rb
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- lib/rbbt/entity/study/samples.rb
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- lib/rbbt/entity/study/snp.rb
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- LICENSE.txt
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- README.rdoc
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homepage: http://github.com/mikisvaz/rbbt-study
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licenses:
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- MIT
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.0
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rubygems_version: 2.2.0
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signing_key:
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specification_version: 4
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summary: Genomic study entity
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