rbbt-study 0.2.24 → 0.2.25
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- checksums.yaml +4 -4
- data/lib/rbbt/entity/study/genotypes/genes.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 4b1573e4eb55acaae29fe0a2371bc1ca3b4c6542
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4
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+
data.tar.gz: 1871448d756e3a94035dbee2bc1ffd612bd591db
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 159253a78bf6bae263f72dee89468264770ebdac940a5cb1410c9c587909fa6221ee43ca78d4802619c9be28f9282e21a12ac8f213041d74021a82a12c76fa4d
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7
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+
data.tar.gz: 392cd4861c5c61d50f97d25792ad67c7b234fc6ef29569f87147794b8170ea8f4b56e0fe0baa7a308419524a480072cd83d484907ecfbce84cabb3803209b9c2
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@@ -66,7 +66,7 @@ module Study
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66
66
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next unless relevant_mutations.include? mutation
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67
67
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genes = []
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68
68
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mis = mutation.mutated_isoforms
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69
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-
genes.concat mis.select_by(:
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69
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+
genes.concat mis.select_by(:nonsynonymous).transcript.gene unless mis.nil? or mis.empty?
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70
70
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genes.concat mutation.transcripts_with_affected_splicing.gene
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71
71
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genes.uniq.each{|gene| samples_with_gene_affected[gene] ||= []; samples_with_gene_affected[gene] << genotype.jobname}
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72
72
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: rbbt-study
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.2.
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4
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+
version: 0.2.25
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Miguel Vazquez
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8
8
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autorequire:
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9
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bindir: bin
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10
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cert_chain: []
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11
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-
date: 2014-
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11
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+
date: 2014-02-11 00:00:00.000000000 Z
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12
12
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dependencies: []
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13
13
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description: This gem add the study entity with suport for NGS, Microarray and other
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14
14
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types of data
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