rbbt-study 0.2.0

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Files changed (25) hide show
  1. checksums.yaml +15 -0
  2. data/LICENSE.txt +20 -0
  3. data/README.rdoc +19 -0
  4. data/lib/rbbt/entity/study/cnv/genes.rb +28 -0
  5. data/lib/rbbt/entity/study/cnv/samples.rb +55 -0
  6. data/lib/rbbt/entity/study/cnv.rb +170 -0
  7. data/lib/rbbt/entity/study/enrichment.rb +418 -0
  8. data/lib/rbbt/entity/study/expression.rb +19 -0
  9. data/lib/rbbt/entity/study/features.rb +17 -0
  10. data/lib/rbbt/entity/study/genes.rb +104 -0
  11. data/lib/rbbt/entity/study/genotypes/enrichment.rb +56 -0
  12. data/lib/rbbt/entity/study/genotypes/genes.rb +103 -0
  13. data/lib/rbbt/entity/study/genotypes/knowledge_base.rb +39 -0
  14. data/lib/rbbt/entity/study/genotypes/mutations.rb +34 -0
  15. data/lib/rbbt/entity/study/genotypes/samples.rb +28 -0
  16. data/lib/rbbt/entity/study/genotypes.rb +110 -0
  17. data/lib/rbbt/entity/study/knowledge_base.rb +36 -0
  18. data/lib/rbbt/entity/study/methylation/samples.rb +31 -0
  19. data/lib/rbbt/entity/study/methylation.rb +90 -0
  20. data/lib/rbbt/entity/study/mutations.rb +259 -0
  21. data/lib/rbbt/entity/study/plots.rb +142 -0
  22. data/lib/rbbt/entity/study/samples.rb +61 -0
  23. data/lib/rbbt/entity/study/snp.rb +87 -0
  24. data/lib/rbbt/entity/study.rb +151 -0
  25. metadata +69 -0
metadata ADDED
@@ -0,0 +1,69 @@
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+ --- !ruby/object:Gem::Specification
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+ name: rbbt-study
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+ version: !ruby/object:Gem::Version
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+ version: 0.2.0
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+ platform: ruby
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+ authors:
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+ - Miguel Vazquez
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+ autorequire:
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+ bindir: bin
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+ cert_chain: []
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+ date: 2013-10-21 00:00:00.000000000 Z
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+ dependencies: []
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+ description: This gem add the study entity with suport for NGS, Microarray and other
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+ types of data
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+ email: miguel.vazquez@cnio.es
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+ executables: []
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+ extensions: []
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+ extra_rdoc_files:
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+ - LICENSE.txt
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+ - README.rdoc
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+ files:
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+ - lib/rbbt/entity/study.rb
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+ - lib/rbbt/entity/study/cnv.rb
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+ - lib/rbbt/entity/study/cnv/genes.rb
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+ - lib/rbbt/entity/study/cnv/samples.rb
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+ - lib/rbbt/entity/study/enrichment.rb
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+ - lib/rbbt/entity/study/expression.rb
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+ - lib/rbbt/entity/study/features.rb
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+ - lib/rbbt/entity/study/genes.rb
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+ - lib/rbbt/entity/study/genotypes.rb
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+ - lib/rbbt/entity/study/genotypes/enrichment.rb
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+ - lib/rbbt/entity/study/genotypes/genes.rb
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+ - lib/rbbt/entity/study/genotypes/knowledge_base.rb
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+ - lib/rbbt/entity/study/genotypes/mutations.rb
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+ - lib/rbbt/entity/study/genotypes/samples.rb
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+ - lib/rbbt/entity/study/knowledge_base.rb
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+ - lib/rbbt/entity/study/methylation.rb
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+ - lib/rbbt/entity/study/methylation/samples.rb
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+ - lib/rbbt/entity/study/mutations.rb
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+ - lib/rbbt/entity/study/plots.rb
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+ - lib/rbbt/entity/study/samples.rb
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+ - lib/rbbt/entity/study/snp.rb
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+ - LICENSE.txt
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+ - README.rdoc
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+ homepage: http://github.com/mikisvaz/rbbt-study
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+ licenses:
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+ - MIT
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+ metadata: {}
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+ post_install_message:
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+ rdoc_options: []
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+ require_paths:
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+ - lib
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+ required_ruby_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ requirements: []
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+ rubyforge_project:
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+ rubygems_version: 2.0.3
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+ signing_key:
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+ specification_version: 4
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+ summary: Genomic study entity
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+ test_files: []