rbbt-sources 3.2.9 → 3.2.11
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- checksums.yaml +4 -4
- data/lib/rbbt/sources/organism.rb +2 -1
- metadata +12 -12
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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|
4
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-
data.tar.gz:
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|
3
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+
metadata.gz: 80c21f27dc2200e1f659c04eb242a46de3920612586c8d793f0c5b517a452530
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4
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+
data.tar.gz: 723833cccdd9f6390d33634188e6ce70e50f4e03fcc6c86dfaa8f23c3673fc8b
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5
5
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SHA512:
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|
6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: 3378f7262b56305b10c96b64c1945d32fa40248cae81f8cceb36b074126451213f9302a019d2477a496359df07138af19c837409c5422262f2f7db069fa2ece5
|
|
7
|
+
data.tar.gz: 6bd698b85fe3b396320833c676e0880ea1067f41e5cd36dec8166543f65fa4c5a6e1660da771f84f900b7f2907c56210e771727ea293a00a06ec49e1a9ed74e8
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@@ -69,8 +69,9 @@ module Organism
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|
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69
69
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end
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|
70
70
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|
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71
71
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Rbbt.claim Rbbt.software.opt.bin.liftOver, :proc do |file|
|
|
72
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+
Open.mkdir File.dirname(file) unless File.directory?(file)
|
|
72
73
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url = "http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver"
|
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73
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-
CMD.cmd_log("wget '#{url}' -O '#{file}' && chmod
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|
74
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+
CMD.cmd_log("wget '#{url}' -O '#{file}' && chmod 755 #{file}")
|
|
74
75
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end
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|
75
76
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|
|
76
77
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def self.hg_build(organism)
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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|
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1
1
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--- !ruby/object:Gem::Specification
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|
2
2
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name: rbbt-sources
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|
3
3
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version: !ruby/object:Gem::Version
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|
4
|
-
version: 3.2.
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|
4
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+
version: 3.2.11
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|
5
5
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platform: ruby
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|
6
6
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authors:
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|
7
7
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- Miguel Vazquez
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|
8
8
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autorequire:
|
|
9
9
|
bindir: bin
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|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2023-03-
|
|
11
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+
date: 2023-03-29 00:00:00.000000000 Z
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|
12
12
|
dependencies:
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|
13
13
|
- !ruby/object:Gem::Dependency
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|
14
14
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name: rbbt-util
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@@ -183,19 +183,19 @@ signing_key:
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|
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183
183
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specification_version: 4
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|
184
184
|
summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
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|
185
185
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test_files:
|
|
186
|
-
- test/rbbt/sources/test_HPRD.rb
|
|
187
|
-
- test/rbbt/sources/test_biomart.rb
|
|
188
|
-
- test/rbbt/sources/test_entrez.rb
|
|
189
186
|
- test/rbbt/sources/test_go.rb
|
|
190
|
-
- test/rbbt/sources/test_gscholar.rb
|
|
191
|
-
- test/rbbt/sources/test_kegg.rb
|
|
192
|
-
- test/rbbt/sources/test_matador.rb
|
|
193
|
-
- test/rbbt/sources/test_organism.rb
|
|
194
|
-
- test/rbbt/sources/test_pharmagkb.rb
|
|
195
|
-
- test/rbbt/sources/test_pina.rb
|
|
196
187
|
- test/rbbt/sources/test_pubmed.rb
|
|
188
|
+
- test/rbbt/sources/test_pina.rb
|
|
189
|
+
- test/rbbt/sources/test_pharmagkb.rb
|
|
190
|
+
- test/rbbt/sources/test_organism.rb
|
|
191
|
+
- test/rbbt/sources/test_synapse.rb
|
|
192
|
+
- test/rbbt/sources/test_entrez.rb
|
|
197
193
|
- test/rbbt/sources/test_stitch.rb
|
|
194
|
+
- test/rbbt/sources/test_biomart.rb
|
|
195
|
+
- test/rbbt/sources/test_HPRD.rb
|
|
198
196
|
- test/rbbt/sources/test_string.rb
|
|
199
|
-
- test/rbbt/sources/
|
|
197
|
+
- test/rbbt/sources/test_kegg.rb
|
|
200
198
|
- test/rbbt/sources/test_tfacts.rb
|
|
199
|
+
- test/rbbt/sources/test_matador.rb
|
|
200
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+
- test/rbbt/sources/test_gscholar.rb
|
|
201
201
|
- test/test_helper.rb
|