rbbt-sources 3.2.8 → 3.2.10
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- checksums.yaml +4 -4
- data/lib/rbbt/sources/organism.rb +1 -0
- metadata +12 -12
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
|
1
1
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---
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2
2
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SHA256:
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|
3
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-
metadata.gz:
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|
4
|
-
data.tar.gz:
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|
3
|
+
metadata.gz: 11d9b944f87f8b7794a5c8514aaa8a472bc66d6699b96cbf4c7092af69ae1f72
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|
4
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+
data.tar.gz: '096c7bcd009caddf4846b8c7da76236db9ae848eef6965dbd77f9e6debe32484'
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|
5
5
|
SHA512:
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|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
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|
6
|
+
metadata.gz: 0257f816289ff190a5bbb13139ce39571a1d32e37146624b8bf952ae2e67d0afac32d2bd210b27090879379a262e135a968f3c543202825f67b38addab43a0f6
|
|
7
|
+
data.tar.gz: bf5506cac9ea24dfd5b781ad9a81def07e7fc96c949554dbd373b3dc0409c64e81b3f0cb3510cc046c96be9ec59c340a68fe8de10e27e55021be2f1780ef3479
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@@ -69,6 +69,7 @@ module Organism
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|
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69
69
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end
|
|
70
70
|
|
|
71
71
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Rbbt.claim Rbbt.software.opt.bin.liftOver, :proc do |file|
|
|
72
|
+
Open.mkdir File.dirname(file) unless File.directory?(file)
|
|
72
73
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url = "http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver"
|
|
73
74
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CMD.cmd_log("wget '#{url}' -O '#{file}' && chmod +rx #{file}")
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|
74
75
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end
|
metadata
CHANGED
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@@ -1,14 +1,14 @@
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|
|
1
1
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--- !ruby/object:Gem::Specification
|
|
2
2
|
name: rbbt-sources
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 3.2.
|
|
4
|
+
version: 3.2.10
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Miguel Vazquez
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|
8
8
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autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2023-03-
|
|
11
|
+
date: 2023-03-28 00:00:00.000000000 Z
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|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: rbbt-util
|
|
@@ -183,19 +183,19 @@ signing_key:
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|
|
183
183
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specification_version: 4
|
|
184
184
|
summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
|
|
185
185
|
test_files:
|
|
186
|
-
- test/rbbt/sources/test_HPRD.rb
|
|
187
|
-
- test/rbbt/sources/test_biomart.rb
|
|
188
|
-
- test/rbbt/sources/test_entrez.rb
|
|
189
186
|
- test/rbbt/sources/test_go.rb
|
|
190
|
-
- test/rbbt/sources/test_gscholar.rb
|
|
191
|
-
- test/rbbt/sources/test_kegg.rb
|
|
192
|
-
- test/rbbt/sources/test_matador.rb
|
|
193
|
-
- test/rbbt/sources/test_organism.rb
|
|
194
|
-
- test/rbbt/sources/test_pharmagkb.rb
|
|
195
|
-
- test/rbbt/sources/test_pina.rb
|
|
196
187
|
- test/rbbt/sources/test_pubmed.rb
|
|
188
|
+
- test/rbbt/sources/test_pina.rb
|
|
189
|
+
- test/rbbt/sources/test_pharmagkb.rb
|
|
190
|
+
- test/rbbt/sources/test_organism.rb
|
|
191
|
+
- test/rbbt/sources/test_synapse.rb
|
|
192
|
+
- test/rbbt/sources/test_entrez.rb
|
|
197
193
|
- test/rbbt/sources/test_stitch.rb
|
|
194
|
+
- test/rbbt/sources/test_biomart.rb
|
|
195
|
+
- test/rbbt/sources/test_HPRD.rb
|
|
198
196
|
- test/rbbt/sources/test_string.rb
|
|
199
|
-
- test/rbbt/sources/
|
|
197
|
+
- test/rbbt/sources/test_kegg.rb
|
|
200
198
|
- test/rbbt/sources/test_tfacts.rb
|
|
199
|
+
- test/rbbt/sources/test_matador.rb
|
|
200
|
+
- test/rbbt/sources/test_gscholar.rb
|
|
201
201
|
- test/test_helper.rb
|