rbbt-sources 3.2.6 → 3.2.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/sources/organism.rb +4 -1
- metadata +13 -13
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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2
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SHA256:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: 1af48e6cfec463ac88696bcf683151caac3153931b78135a931081af85764c5e
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4
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data.tar.gz: ab1ed29f51a3c1200d4bf92d149176f62817cbad5a2a7fb69f28ecbcaa6e2d96
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SHA512:
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: 4767ac32b9729ecefe56192f7be6f3fd9fe0c6d44661b4584eeed412604a59b548e927cef4cbc15560e83e7d5ccfdef3e2b00938dc8fb99022e40d64711d325e
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7
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data.tar.gz: 68ce0cb6e56e5b4c928a719ada1021f805e650d55045a2197d1018f95967d809a7c1a315d0724df28aecbbac503d44a16f4ed199b0a7a3be4d1ff941a8b269df
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@@ -68,7 +68,10 @@ module Organism
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module_eval "#{ organism } = with_key '#{organism}'"
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end
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-
Rbbt.claim Rbbt.software.opt.bin.liftOver, :
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71
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Rbbt.claim Rbbt.software.opt.bin.liftOver, :proc do |file|
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72
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url = "http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver"
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CMD.cmd_log("wget '#{url}' -O '#{file}' && chmod +rx #{file}")
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end
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def self.hg_build(organism)
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require 'rbbt/sources/ensembl_ftp'
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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version: 3.2.
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version: 3.2.9
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2023-03-
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date: 2023-03-17 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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@@ -178,24 +178,24 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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-
rubygems_version: 3.
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rubygems_version: 3.4.8
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signing_key:
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specification_version: 4
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summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
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test_files:
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+
- test/rbbt/sources/test_HPRD.rb
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187
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+
- test/rbbt/sources/test_biomart.rb
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188
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- test/rbbt/sources/test_entrez.rb
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- test/rbbt/sources/test_go.rb
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187
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-
- test/rbbt/sources/
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-
- test/rbbt/sources/
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-
- test/rbbt/sources/
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+
- test/rbbt/sources/test_gscholar.rb
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- test/rbbt/sources/test_kegg.rb
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192
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- test/rbbt/sources/test_matador.rb
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- test/rbbt/sources/test_organism.rb
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-
- test/rbbt/sources/
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-
- test/rbbt/sources/
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+
- test/rbbt/sources/test_pharmagkb.rb
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195
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- test/rbbt/sources/test_pina.rb
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- test/rbbt/sources/test_pubmed.rb
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- test/rbbt/sources/test_stitch.rb
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- test/rbbt/sources/test_biomart.rb
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- test/rbbt/sources/test_HPRD.rb
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- test/rbbt/sources/test_string.rb
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- test/rbbt/sources/
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- test/rbbt/sources/test_synapse.rb
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- test/rbbt/sources/test_tfacts.rb
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- test/rbbt/sources/test_matador.rb
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- test/rbbt/sources/test_gscholar.rb
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- test/test_helper.rb
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