rbbt-sources 3.1.36 → 3.1.37
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +5 -5
- data/lib/rbbt/sources/organism.rb +2 -0
- data/share/install/Organism/organism_helpers.rb +1 -1
- metadata +3 -4
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
|
-
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
2
|
+
SHA256:
|
|
3
|
+
metadata.gz: 946161a948c6af574ca99a7ec515d178cdcd0c2041adab0b0aa960ccf9a50f42
|
|
4
|
+
data.tar.gz: 75b039de2f1f30f5e372747725b3239bd8894ee22733fae5df99d126ec806b4b
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 4628f939d7ea4c7f20266a27d0b5750c1b2c5eeb13d49198d5e802b43a6293ff8b858483baeeb343f2022a8b4701a77bf32c6b9b1c84e5d60fa84a9b2a252120
|
|
7
|
+
data.tar.gz: 8eec95c8f0bc9304da7a61856e7cdb8d92f9c7fb8eaad31e8d14054f656da3c86cd54602f77cc57edf0ae128796166ff07f9459eb280bf6d2fc9c9b84b6cc435
|
|
@@ -806,7 +806,7 @@ file 'cdna_fasta' do |t|
|
|
|
806
806
|
release = Ensembl.org2release(organism)
|
|
807
807
|
num = release.split("-").last
|
|
808
808
|
build_code = num.to_i > 75 ? "GRCh38" : "GRCh37"
|
|
809
|
-
url = "ftp://ftp.ensembl.org/pub/release-#{num}/fasta/homo_sapiens/cdna/Homo_sapiens.#{build_code}.cdna.all.fa.gz"
|
|
809
|
+
url = "ftp://ftp.ensembl.org/pub/release-#{num}/fasta/homo_sapiens/cdna/Homo_sapiens.#{build_code}.#{num}.cdna.all.fa.gz"
|
|
810
810
|
CMD.cmd("wget '#{url}' -O #{t.name}.gz")
|
|
811
811
|
nil
|
|
812
812
|
end
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: rbbt-sources
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 3.1.
|
|
4
|
+
version: 3.1.37
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Miguel Vazquez
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2019-
|
|
11
|
+
date: 2019-05-20 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: rbbt-util
|
|
@@ -189,8 +189,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
189
189
|
- !ruby/object:Gem::Version
|
|
190
190
|
version: '0'
|
|
191
191
|
requirements: []
|
|
192
|
-
|
|
193
|
-
rubygems_version: 2.6.13
|
|
192
|
+
rubygems_version: 3.0.3
|
|
194
193
|
signing_key:
|
|
195
194
|
specification_version: 4
|
|
196
195
|
summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
|