rbbt-sources 3.1.28 → 3.1.29

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 50eb50d6c48d792ccc7836dbd196b9536f26039a
-  data.tar.gz: 25c973bfc1207dd74a88a50b9a10d9f9024fc22f
+  metadata.gz: 14ec519ad1a7309351fadacf8d418b197c931769
+  data.tar.gz: 8426ce938123e929a04a07bbb6c0ab5d12be6b04
 SHA512:
-  metadata.gz: 69dedb4d4c1f297931ec739dd397753f824cb6a1b34f09693d785d9e530940823eb36bb5b994b1b77869077cbb7a3ccd02e15e5dda903c7e5f9ce3e6765909e8
-  data.tar.gz: afc19612fe773c97906fef56e12d9a2ca3b0f1b93479c6113164e0eca50460271fe2dcb0fada678bbebc093fa508db20b49784c37c0cd7e5be44ff635d32b94e
+  metadata.gz: d817ada6d2df2a355dd3ac7ae6c98d3261f029bd9a82a02e45c0022118ff88b99e5ead63c6d424c6a522e0c4d89f66ac4b0c00c33d4007cd9462dbb8b3923ba6
+  data.tar.gz: adf03a5ba5263bcb10877e8823826b9239cbabc73e9fe81ace8b2d21e2da0505d6a350f7c36f44efe73af0257863ec0077b6a7255abbb7daa3dfba857b6717bc

data/lib/rbbt/sources/pubmed.rb

@@ -257,11 +257,19 @@ module PubMed
         result[pmid] = xml
       end
 
+      ids.each{|id| next if id.nil? or result[id]; fid = id.sub(/^0+/,''); next unless result[fid]; result[id] = result[fid]}
+      ids.each{|id| next if id.nil? or result[id]; result[id] = ""}
+
       result
     end
 
     articles = {}
-    pmids.each{|id| next if id.nil? or result_files[id].nil?; articles[id] = Article.new(Open.read(result_files[id])) }
+    pmids.each do |id| 
+      next if id.nil? or result_files[id].nil?
+      txt = Open.read(result_files[id]) 
+      next if txt.empty?
+      articles[id] = Article.new(txt) 
+    end
 
     if _array
       articles

data/test/rbbt/sources/test_pubmed.rb

@@ -31,6 +31,14 @@ class TestPubMed < Test::Unit::TestCase
     assert("vazquez2008sent", PubMed::Article.make_bibentry('vazquez', 2008, "SENT: Semantic features in text"))
     assert("vazquez2008aes", PubMed::Article.make_bibentry('vazquez', 2008, "An Example System"))
   end
+
+  def test_missing
+    pmids = '18627426,014966295'.split(",")
+    Log.severity = 0
+    assert PubMed.get_article(pmids).include? "014966295"
+    assert ! PubMed.get_article(pmids).include?("18627426")
+  end
+
 end
 
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-sources
 version: !ruby/object:Gem::Version
-  version: 3.1.28
+  version: 3.1.29
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-12-22 00:00:00.000000000 Z
+date: 2018-01-15 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rbbt-util