rbbt-sources 3.1.27 → 3.1.28
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/sources/PRO.rb +3 -2
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 50eb50d6c48d792ccc7836dbd196b9536f26039a
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4
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data.tar.gz: 25c973bfc1207dd74a88a50b9a10d9f9024fc22f
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: 69dedb4d4c1f297931ec739dd397753f824cb6a1b34f09693d785d9e530940823eb36bb5b994b1b77869077cbb7a3ccd02e15e5dda903c7e5f9ce3e6765909e8
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7
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data.tar.gz: afc19612fe773c97906fef56e12d9a2ca3b0f1b93479c6113164e0eca50460271fe2dcb0fada678bbebc093fa508db20b49784c37c0cd7e5be44ff635d32b94e
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data/lib/rbbt/sources/PRO.rb
CHANGED
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@@ -16,12 +16,13 @@ module PRO
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PRO.claim PRO.identifiers, :proc do
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url = "ftp://ftp.pir.georgetown.edu/databases/ontology/pro_obo/PRO_mappings/uniprotmapping.txt"
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-
dumper = TSV::Dumper.new :key_field => "PRO ID", :fields => ["UniProt/SwissProt Accession"], :type => :
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dumper = TSV::Dumper.new :key_field => "PRO ID", :fields => ["UniProt/SwissProt Accession"], :type => :double, :namespace => PRO.organism
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dumper.init
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TSV.traverse Open.open(url), :type => :array, :into => dumper, :bar => true do |line|
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pro, uni = line.split("\t")
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[pro, [uni.split(":").last]]
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end
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+
TSV.collapse_stream dumper
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end
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PRO.claim PRO.uniprot_equivalences, :proc do
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@@ -42,6 +43,6 @@ module PRO
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end
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end
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-
iif PRO.identifiers.produce.find if __FILE__ == $0
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+
iif PRO.identifiers.produce(true).find if __FILE__ == $0
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iif PRO.uniprot_equivalences.produce(true).find if __FILE__ == $0
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