rbbt-sources 3.1.27 → 3.1.28
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- checksums.yaml +4 -4
- data/lib/rbbt/sources/PRO.rb +3 -2
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 50eb50d6c48d792ccc7836dbd196b9536f26039a
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4
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+
data.tar.gz: 25c973bfc1207dd74a88a50b9a10d9f9024fc22f
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 69dedb4d4c1f297931ec739dd397753f824cb6a1b34f09693d785d9e530940823eb36bb5b994b1b77869077cbb7a3ccd02e15e5dda903c7e5f9ce3e6765909e8
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7
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+
data.tar.gz: afc19612fe773c97906fef56e12d9a2ca3b0f1b93479c6113164e0eca50460271fe2dcb0fada678bbebc093fa508db20b49784c37c0cd7e5be44ff635d32b94e
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data/lib/rbbt/sources/PRO.rb
CHANGED
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@@ -16,12 +16,13 @@ module PRO
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16
16
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PRO.claim PRO.identifiers, :proc do
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17
17
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url = "ftp://ftp.pir.georgetown.edu/databases/ontology/pro_obo/PRO_mappings/uniprotmapping.txt"
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18
18
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19
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-
dumper = TSV::Dumper.new :key_field => "PRO ID", :fields => ["UniProt/SwissProt Accession"], :type => :
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19
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+
dumper = TSV::Dumper.new :key_field => "PRO ID", :fields => ["UniProt/SwissProt Accession"], :type => :double, :namespace => PRO.organism
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20
20
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dumper.init
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21
21
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TSV.traverse Open.open(url), :type => :array, :into => dumper, :bar => true do |line|
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22
22
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pro, uni = line.split("\t")
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23
23
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[pro, [uni.split(":").last]]
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24
24
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end
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25
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+
TSV.collapse_stream dumper
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25
26
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end
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26
27
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27
28
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PRO.claim PRO.uniprot_equivalences, :proc do
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@@ -42,6 +43,6 @@ module PRO
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42
43
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end
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43
44
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end
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44
45
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45
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-
iif PRO.identifiers.produce.find if __FILE__ == $0
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46
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+
iif PRO.identifiers.produce(true).find if __FILE__ == $0
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46
47
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iif PRO.uniprot_equivalences.produce(true).find if __FILE__ == $0
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47
48
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