rbbt-sources 3.1.17 → 3.1.18
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/etc/allowed_biomart_archives +1 -3
- data/etc/biomart/missing_in_archive +4 -1
- data/lib/rbbt/sources/biomart.rb +6 -2
- metadata +12 -12
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: d6a24c95d852df442ed303fe4fdc57b47b2fd0f2
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4
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+
data.tar.gz: ea6a37e44a97d4a8659a8d07ee58f7264fa50062
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: a78985096754ac5d3689f06306c470b2f82334c9e427cb5efe05a88d78051fab07644e656f646079903eb2811642274039b6b71b8c233ef9e2f7fa45dd672add
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7
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+
data.tar.gz: 99004a5e7c6bc624f371f70306600cca13f915a13c2021c7ac50705206b6cc8df678d757843ab6e969c0b5dd4b453ce3e8f58d9ad0b9b766162e9042cb108842
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@@ -1,10 +1,13 @@
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1
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+
">dec2016":
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2
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+
- uniprot_swissprot_accession~uniprotswissprot
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3
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+
- uniprot_swissprot~uniprotswissprot
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4
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+
- codelink
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1
5
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"<jun2009":
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2
6
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- refseq_mrna
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3
7
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- refseq_ncrna
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4
8
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- refseq_mrna_predicted
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5
9
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- refseq_ncrna_predicted
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6
10
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">jun2015":
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7
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-
- uniprot_swissprot
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8
11
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- uniprot_swissprot_accession~uniprot_swissprot
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9
12
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<aug2014:
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10
13
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- external_gene_name~external_gene_id
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data/lib/rbbt/sources/biomart.rb
CHANGED
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@@ -209,8 +209,12 @@ module BioMart
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209
209
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orig,_sep, new = str.partition "~"
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210
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changes[orig] = new
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end
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212
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-
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213
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-
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212
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+
changed = true
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213
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+
while changed
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214
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+
new_attrs = attrs.collect{|n,k| [n, changes[k] || k] }
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215
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+
changed = new_attrs != attrs
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216
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+
attrs = new_attrs
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217
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+
end
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214
218
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215
219
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216
220
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codes = attrs.collect{|attr| attr[1]}
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: rbbt-sources
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 3.1.
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4
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+
version: 3.1.18
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Miguel Vazquez
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8
8
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autorequire:
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9
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bindir: bin
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cert_chain: []
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11
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-
date: 2017-08-
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11
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+
date: 2017-08-14 00:00:00.000000000 Z
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12
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dependencies:
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- !ruby/object:Gem::Dependency
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14
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name: rbbt-util
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@@ -181,24 +181,24 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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184
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-
rubygems_version: 2.6.
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184
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+
rubygems_version: 2.6.12
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signing_key:
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186
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specification_version: 4
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summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
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188
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test_files:
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189
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-
- test/test_helper.rb
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190
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-
- test/rbbt/sources/test_pubmed.rb
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191
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-
- test/rbbt/sources/test_string.rb
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192
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-
- test/rbbt/sources/test_gscholar.rb
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193
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-
- test/rbbt/sources/test_biomart.rb
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194
189
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- test/rbbt/sources/test_go.rb
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190
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+
- test/rbbt/sources/test_pubmed.rb
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195
191
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- test/rbbt/sources/test_pina.rb
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196
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-
- test/rbbt/sources/test_entrez.rb
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197
192
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- test/rbbt/sources/test_pharmagkb.rb
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198
193
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- test/rbbt/sources/test_organism.rb
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199
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-
- test/rbbt/sources/test_matador.rb
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200
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-
- test/rbbt/sources/test_tfacts.rb
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201
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-
- test/rbbt/sources/test_kegg.rb
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202
194
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- test/rbbt/sources/test_synapse.rb
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195
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+
- test/rbbt/sources/test_entrez.rb
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203
196
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- test/rbbt/sources/test_stitch.rb
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197
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+
- test/rbbt/sources/test_biomart.rb
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204
198
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- test/rbbt/sources/test_HPRD.rb
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199
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+
- test/rbbt/sources/test_string.rb
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200
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+
- test/rbbt/sources/test_kegg.rb
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201
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+
- test/rbbt/sources/test_tfacts.rb
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202
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+
- test/rbbt/sources/test_matador.rb
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203
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+
- test/rbbt/sources/test_gscholar.rb
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204
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+
- test/test_helper.rb
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