rbbt-sources 3.0.3 → 3.0.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/sources/kegg.rb +2 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: 8db9d47e44f4e4ab79e5568922226aabf9f8f96c
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4
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data.tar.gz: 97e7b44d98556d925bc569aae4c4972dcf99cc95
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SHA512:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: 8fef91c63deabb55ce444ff322c09b9e63e30f505afd785e35f70feec8820978ef8512d327ad3baddf76fea180dce56197ae21556ce7ec1501df33e5171699fc
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7
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data.tar.gz: 5e53be06553d90ba8d4b952ff07698cc5da4d9e375744938665f5f3220938ebdb9d92a252b61716bcf4e8219876ed63f1b47a97a3c5b3c12d2659847b00cb622
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data/lib/rbbt/sources/kegg.rb
CHANGED
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@@ -110,11 +110,11 @@ if defined? Entity
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self
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when format == "KEGG Gene ID"
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ensembl = from_kegg.clean_annotations
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-
Gene.setup(Translation.job(:tsv_translate, "", :organism => organism, :genes => ensembl, :format => new_format).
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+
Gene.setup(Translation.job(:tsv_translate, "", :organism => organism, :genes => ensembl, :format => new_format).exec.chunked_values_at(ensembl), new_format, organism).tap{|o| o.extend AnnotatedArray if AnnotatedArray === self }
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when new_format == "KEGG Gene ID"
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to_kegg
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else
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-
Gene.setup(Translation.job(:tsv_translate, "", :organism => organism, :genes => self, :format => new_format).
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Gene.setup(Translation.job(:tsv_translate, "", :organism => organism, :genes => self, :format => new_format).exec.chunked_values_at(self), new_format, organism).tap{|o| o.extend AnnotatedArray if AnnotatedArray === self }
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end
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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-
version: 3.0.
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4
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version: 3.0.4
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-
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date: 2014-05-27 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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