rbbt-sources 3.0.16 → 3.0.17
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/share/install/Organism/organism_helpers.rb +3 -4
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: 07c7bfe556c862a0f646ad990d58e1eb15ded317
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4
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data.tar.gz: 3b476b46b4b06980d0ea076030886bf93070ec01
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5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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metadata.gz: 6bdbdcd6427b78ba806f6b0708096f820bd077fbd63239dcf103523bd1195b9c7657cce3285910759ae45ef1a6377f031130f0fbea3ebb1b29daf5b8c2f838fb
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7
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data.tar.gz: 4fa894ee97dc750995fda86d145c6fa40fa1c21d4f394e1bd48d104fae4e5bef861f4d7c2df610fe894f1f608fc3023b4b309fa7a9281644d43168cd61fb5d85
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@@ -564,16 +564,15 @@ file 'transcript_sequence' => ["exons", "transcript_exons"] do |t|
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transcript_sequence = {}
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566
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chr_transcript_ranges.each do |chr, transcript_ranges|
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567
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-
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begin
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569
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-
raise "LRG, GL, HG, and HSCHR chromosomes not supported: #{chr}" if chr =~ /^(?:LRG_|GL0|HG|HSCHR)/
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568
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raise "LRG, GL, HG, NT, and HSCHR chromosomes not supported: #{chr}" if chr =~ /^(?:LRG_|GL0|HG|HSCHR|NT)/
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p = File.expand_path("./chromosome_#{chr}")
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Organism.root.annotate p
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p.sub!(%r{.*/organisms/},'share/organisms/')
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572
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chr_str = p.produce.read
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rescue Exception
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575
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Log.
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576
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-
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574
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Log.warn("Chr #{ chr } failed (#{transcript_ranges.length} transcripts not covered): #{$!.message}")
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raise $! unless $!.message =~ /not supported/
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next
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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4
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-
version: 3.0.
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4
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+
version: 3.0.17
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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11
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-
date: 2014-
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11
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+
date: 2014-09-19 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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