rbbt-sources 3.0.16 → 3.0.17

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: 0c43d26fec66e78ef09d7dec5ad0d06b4502a189
+  metadata.gz: 07c7bfe556c862a0f646ad990d58e1eb15ded317
+  data.tar.gz: 3b476b46b4b06980d0ea076030886bf93070ec01
 SHA512:
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+  metadata.gz: 6bdbdcd6427b78ba806f6b0708096f820bd077fbd63239dcf103523bd1195b9c7657cce3285910759ae45ef1a6377f031130f0fbea3ebb1b29daf5b8c2f838fb
+  data.tar.gz: 4fa894ee97dc750995fda86d145c6fa40fa1c21d4f394e1bd48d104fae4e5bef861f4d7c2df610fe894f1f608fc3023b4b309fa7a9281644d43168cd61fb5d85

data/share/install/Organism/organism_helpers.rb

@@ -564,16 +564,15 @@ file 'transcript_sequence' => ["exons", "transcript_exons"] do |t|
 
   transcript_sequence = {}
   chr_transcript_ranges.each do |chr, transcript_ranges|
-
     begin
-      raise "LRG, GL, HG, and HSCHR chromosomes not supported: #{chr}" if chr =~ /^(?:LRG_|GL0|HG|HSCHR)/
+      raise "LRG, GL, HG, NT, and HSCHR chromosomes not supported: #{chr}" if chr =~ /^(?:LRG_|GL0|HG|HSCHR|NT)/
       p = File.expand_path("./chromosome_#{chr}")
       Organism.root.annotate p
       p.sub!(%r{.*/organisms/},'share/organisms/')
       chr_str = p.produce.read
     rescue Exception
-      Log.debug("Chr #{ chr } failed (#{transcript_ranges.length} transcripts not covered): #{$!.message}")
-      Log.exception $!
+      Log.warn("Chr #{ chr } failed (#{transcript_ranges.length} transcripts not covered): #{$!.message}")
+      raise $! unless $!.message =~ /not supported/
       next
     end
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-sources
 version: !ruby/object:Gem::Version
-  version: 3.0.16
+  version: 3.0.17
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-08-26 00:00:00.000000000 Z
+date: 2014-09-19 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rbbt-util