rbbt-sources 2.1.2 → 2.1.3

checksums.yaml

@@ -1,15 +1,15 @@
 ---
 !binary "U0hBMQ==":
   metadata.gz: !binary |-
-    OTA2OWRlODEyNjgwZTEyNDQ4MTZiN2NkZWM2NTgyY2QwOTY2NjM2NQ==
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   data.tar.gz: !binary |-
-    YzRmMzdjOGI0YjYwNjVlNDhjZWE5NjcxMTBjZmU4YzJkMGZmMjBhYw==
-!binary "U0hBNTEy":
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+SHA512:
   metadata.gz: !binary |-
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data/lib/rbbt/sources/COSMIC.rb

@@ -6,7 +6,7 @@ module COSMIC
   self.subdir = "share/databases/COSMIC"
 
   COSMIC.claim COSMIC.mutations, :proc do 
-    url = "ftp://ftp.sanger.ac.uk/pub/CGP/cosmic/data_export/CosmicCompleteExport_v66_250713.tsv.gz"
+    url = "ftp://ftp.sanger.ac.uk/pub/CGP/cosmic/data_export/CosmicCompleteExport_v67_241013.tsv.gz"
 
     stream = CMD.cmd('awk \'BEGIN{FS="\t"} { if ($12 != "" && $12 != "Mutation ID") { sub($12, "COSM" $12 ":" $4)}; print}\'', :in => Open.open(url), :pipe => true)
     tsv = TSV.open(stream, :type => :list, :header_hash => "", :key_field => "Mutation ID", :namespace => "Hsa/jun2011")

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-sources
 version: !ruby/object:Gem::Version
-  version: 2.1.2
+  version: 2.1.3
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-10-22 00:00:00.000000000 Z
+date: 2013-11-20 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rbbt-util
@@ -126,9 +126,9 @@ files:
 - share/install/Organism/organism_helpers.rb
 - share/install/STITCH/Rakefile
 - share/install/lib/helpers.rb
-- test/rbbt/sources/test_go.rb
-- test/rbbt/sources/test_entrez.rb
 - test/rbbt/sources/test_biomart.rb
+- test/rbbt/sources/test_entrez.rb
+- test/rbbt/sources/test_go.rb
 - test/rbbt/sources/test_gscholar.rb
 - test/rbbt/sources/test_organism.rb
 - test/rbbt/sources/test_pubmed.rb
@@ -152,7 +152,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.0.3
+rubygems_version: 2.2.0
 signing_key: 
 specification_version: 4
 summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)