rbbt-sources 2.1.2 → 2.1.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +9 -9
- data/lib/rbbt/sources/COSMIC.rb +1 -1
- metadata +5 -5
checksums.yaml
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---
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!binary "U0hBMQ==":
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metadata.gz: !binary |-
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-
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ZTgwZjU4OTk0ZDJlZTBkN2VhZmM3N2ZkZDM5MjlmMmZlZTk4NjA0ZA==
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data.tar.gz: !binary |-
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Y2M3YWE4NDQzNDJiNTkwNzZkZjk2OTUyZjM2OTU5YzEzNjBkZmI5Mw==
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SHA512:
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metadata.gz: !binary |-
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NzFhNjU3ODAzMTBlMTY4ZTkyZGJhNWViZGE1NDFiNzI2OGIzNmMzN2IxNDgy
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NjliYTE5ZGEzYzM2ODQ1ZGRlM2E1Y2FkYTM2MmQwZDEwMTBmMDk3ODFjYzZi
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NmQzY2VlODhiZTM1Y2ZiOGI4MzJmNzdkOTQyYzU1ZDllOWI1ZDA=
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data.tar.gz: !binary |-
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YzY0ODRmN2Y1MWZhNmY2MDI2NjRhZTQ3NmE0Yzc1MGI2NDYyZjY1ZjJjMDE1
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NjU0OTFmNWQxOTkzNWQxNWRlZmM1ZGQ2OTU4ZmRlMjlhOWNlY2E2YTEwM2Fk
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YzMxNmU0ODg4NTA2NmJlMTJlNDY5OTAyNmM5MTZmOTBhNTVkYTE=
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data/lib/rbbt/sources/COSMIC.rb
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@@ -6,7 +6,7 @@ module COSMIC
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self.subdir = "share/databases/COSMIC"
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COSMIC.claim COSMIC.mutations, :proc do
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url = "ftp://ftp.sanger.ac.uk/pub/CGP/cosmic/data_export/
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url = "ftp://ftp.sanger.ac.uk/pub/CGP/cosmic/data_export/CosmicCompleteExport_v67_241013.tsv.gz"
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stream = CMD.cmd('awk \'BEGIN{FS="\t"} { if ($12 != "" && $12 != "Mutation ID") { sub($12, "COSM" $12 ":" $4)}; print}\'', :in => Open.open(url), :pipe => true)
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tsv = TSV.open(stream, :type => :list, :header_hash => "", :key_field => "Mutation ID", :namespace => "Hsa/jun2011")
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metadata
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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version: 2.1.
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version: 2.1.3
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2013-
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date: 2013-11-20 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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@@ -126,9 +126,9 @@ files:
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- share/install/Organism/organism_helpers.rb
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- share/install/STITCH/Rakefile
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- share/install/lib/helpers.rb
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-
- test/rbbt/sources/test_go.rb
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- test/rbbt/sources/test_entrez.rb
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- test/rbbt/sources/test_biomart.rb
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- test/rbbt/sources/test_entrez.rb
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- test/rbbt/sources/test_go.rb
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- test/rbbt/sources/test_gscholar.rb
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- test/rbbt/sources/test_organism.rb
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- test/rbbt/sources/test_pubmed.rb
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@@ -152,7 +152,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.0
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rubygems_version: 2.2.0
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signing_key:
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specification_version: 4
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summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
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