rbbt-rest 1.8.152 → 1.8.155

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  metadata.gz: e27cf7773d763ae330e2be0ca5f07661f18998bf86c09249b7c5d33fc233b8d5
-  data.tar.gz: 8cab349ccfb9525341d7779f208505b57890889706c211737d0a29538f887c69
+  metadata.gz: 7705afb013db60791458191ace43b542ef70882de5945fd9d18cdcc1503523b6
+  data.tar.gz: 235e86b1dd5ec07f84904f335e0c6bc91aceca0c7e389d12e80c346499f45320
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-  data.tar.gz: 23060fe4f7650865a13034ce9e84232b74b59b37cfe1a59f747728d33b5150bf4ee77b4de87761ff49129f671fe0116a2b781cf8e04d59eac735f835c908e20e
+  metadata.gz: 1a5aae796d5ae2ab6bac153c609fca60f66ad66ae7491ee33b6e999b22a91d538d90ee951b3372050b833995bef654c67991888bc5a7664c20bac288a472bf9a
+  data.tar.gz: 572754ed9fe6f785988447c278825a02df57d9f06313016d0ab22bd2af79a86f5593d460206f7562c8c498f4a0733d99e6d8b5b24e1f63cce271e454fa894006

data/Rakefile

@@ -20,11 +20,10 @@ begin
     gem.add_dependency('sassc')
     gem.add_dependency('json')
     gem.add_dependency('haml')
-    gem.add_dependency('rest-client')
-    gem.add_dependency('therubyracer')
     gem.add_dependency('sinatra-authorization')
     gem.add_dependency('sinatra-cross_origin')
     gem.add_dependency('sinatra-contrib')
+    #gem.add_dependency('therubyracer')
 
     # gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
     gem.license = "MIT"

data/lib/rbbt/rest/common/misc.rb

@@ -280,6 +280,7 @@ module RbbtRESTHelpers
   end
 
   def add_GET_param(url, param, value)
+    url = remove_GET_param(url, param)
     if url =~ /\?.+=/
       url + "&#{ param }=#{ value }"
     else

data/lib/rbbt/rest/common/table.rb

@@ -317,7 +317,7 @@ module RbbtRESTHelpers
 
     entity_options = options[:entity_options]
 
-    Misc.prepare_entity(value, type, entity_options) if Entity.formats[type] and not options[:unnamed]
+    value = Misc.prepare_entity(value, type, entity_options) if Entity.formats[type] and not options[:unnamed]
 
     orig_value = value
     value = value.link if value.respond_to? :link and not options[:unnamed]

data/lib/rbbt/rest/entity/rest.rb

@@ -3,7 +3,6 @@ require 'rbbt/rest/entity/list'
 
 module Entity
   module REST
-    USE_ENSEMBL = true
 
     REST_ENTITIES = Set.new
 
@@ -177,7 +176,6 @@ module Entity
     end
 
     def list_link(text = nil, id = nil, options = {})
-      options = Misc.add_defaults options, :ensembl => USE_ENSEMBL
       ensembl = Misc.process_options options, :ensembl
 
       if ensembl and self.respond_to? :ensembl and self.format !~ /^Ensembl /

data/share/views/partials/dependencies.haml

@@ -15,7 +15,7 @@
       - dep_status = "done" if dep.path.exists?
 
     - dep_status ||= dep.status
-    - if ! remote && dep.file(:progress).exists?
+    - if ! remote && ! dep_status == 'done' && dep.file(:progress).exists?
       - pgr = dep.file(:progress).yaml
       - if pgr and pgr[:last_percent]
         - start = pgr[:start]
@@ -63,7 +63,7 @@
         - elsif Module === dep_workflow
           - wf = dep_workflow
 
-        - if Open.remote?(dep.path)
+        - if remote
           - url = dep.path.split("?").first
           %a(href=url) #{ name }  
 

data/share/views/public/js/helpers/_ellipsis.js

@@ -29,7 +29,12 @@ function contract_ellipsis(elem, max){
       var links = [];
       var head = elements.slice(0, max).removeClass('long');
       head.each(function(){ links.push(this.outerHTML)})
-      new_content = links.join(" ");
+
+      if (elements.first().hasClass('lines'))
+        new_content = links.join(" ");
+      else
+        new_content = links.join(", ");
+
       elem.html(new_content);
     }
 

data/share/views/public/plugins/cytoscapejs/cytoscape.js

@@ -1 +1 @@
-share/views/public/plugins/cytoscapejs/cytoscape.umd.js
+./cytoscape.umd.js

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-rest
 version: !ruby/object:Gem::Version
-  version: 1.8.152
+  version: 1.8.155
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2022-07-26 00:00:00.000000000 Z
+date: 2023-03-07 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
@@ -108,34 +108,6 @@ dependencies:
     - - ">="
       - !ruby/object:Gem::Version
         version: '0'
-- !ruby/object:Gem::Dependency
-  name: rest-client
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: therubyracer
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
 - !ruby/object:Gem::Dependency
   name: sinatra-authorization
   requirement: !ruby/object:Gem::Requirement