rbbt-rest 1.7.19 → 1.7.20

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-rest
 version: !ruby/object:Gem::Version
-  version: 1.7.19
+  version: 1.7.20
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-02-29 00:00:00.000000000 Z
+date: 2016-03-14 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
@@ -369,8 +369,6 @@ files:
 - share/views/public/js/helpers/_md5.js
 - share/views/public/js/helpers/defer.js
 - share/views/public/js/helpers/helpers.js
-- share/views/public/js/rbbt.aes_plots.js
-- share/views/public/js/rbbt.aesthetics.js
 - share/views/public/js/rbbt.basic.js
 - share/views/public/js/rbbt.entity.basic.js
 - share/views/public/js/rbbt.entity.js
@@ -383,7 +381,13 @@ files:
 - share/views/public/js/rbbt.knowledge_base.js
 - share/views/public/js/rbbt.modal.js
 - share/views/public/js/rbbt.page.js
-- share/views/public/js/rbbt.plots.js
+- share/views/public/js/rbbt.plots/rbbt.plots.aes.js
+- share/views/public/js/rbbt.plots/rbbt.plots.aesthetics.js
+- share/views/public/js/rbbt.plots/rbbt.plots.basic.js
+- share/views/public/js/rbbt.plots/rbbt.plots.graph.adapters.js
+- share/views/public/js/rbbt.plots/rbbt.plots.graph.js
+- share/views/public/js/rbbt.plots/rbbt.plots.graph.kb.js
+- share/views/public/js/rbbt.plots/rbbt.plots.list.js
 - share/views/public/js/rbbt.views.js
 - share/views/public/js/rbbt/actions.js
 - share/views/public/js/rbbt/dom_update.js
@@ -1176,6 +1180,7 @@ files:
 - share/views/public/plugins/jquery/js/jquery-2.1.4.js
 - share/views/public/plugins/jquery/js/jquery.cookie.js
 - share/views/public/plugins/jquery/js/jquery.form.js
+- share/views/public/plugins/js-cookie/js/js.cookie.js
 - share/views/public/plugins/mithril-node-render/js/index.js
 - share/views/public/plugins/mithril/js/mithril.js
 - share/views/public/plugins/mithril/js/mithril.min.js

data/share/views/public/js/rbbt.aes_plots.js

@@ -1,381 +0,0 @@
-rbbt.plots.aes = {}
-
-rbbt.plots.aes.get_properties = function(list, rules){
-  if (undefined === rules) rules == []
-  if (undefined === list.properties) list.properties = {}
-  var promises = []
-  forArray(rules, function(rule){
-    var name = rule.name
-    var extract = rule.extract
-    
-    if (rule.entity_type && rule.entity_type != list.type) return 
-
-    if (rule.info){
-      var property = rule.property
-      var deferred = m.deferred()
-      var entry = rule.info
-      if (undefined === name) name = entry
-
-      var value = list.info[entry]
-      if (undefined === value && entry == 'type') value = list.type
-      if (undefined === value && entry == 'code') value = list.codes
-
-      deferred.resolve(value)
-      promise = deferred.promise
-    }
-
-    if (rule.value){
-      var property = rule.property
-      var deferred = m.deferred()
-      deferred.resolve(rule.value)
-      promise = deferred.promise
-    }
-
-    if (rule.property){
-      var property = rule.property
-      var args = rule.args
-      if (undefined === name) name = property
-      promise = rbbt.entity_array.property(list.codes, list.type, list.info, property, args)
-      if (extract){ promise = promise.then(function(res){ return res.map(extract)}) }
-    }
-
-    if (rule.workflow){
-      var workflow = rule.workflow
-      var task = rule.task
-      var args = rule.args
-      if (undefined === name) name = task
-      promise = rbbt.job(workflow, task, args, true)
-      if (extract){ promise = promise.then(function(res){ return list.codes.map(function(code){return extract.call(null, res, code)}) } )}
-    }
-
-    if (rule.parents || rule.children){
-      var kb_type 
-      var database
-      if (rule.parents){
-        kb_type = 'parent'
-        var database = rule.parents
-        if (undefined === name) name = database
-
-        promise = rbbt.entity_array.parents(list.codes, list.type, database)
-      }else{
-        kb_type = 'children'
-        var database = rule.children
-        if (undefined === name) name = database
-
-        promise = rbbt.entity_array.children(list.codes, list.type, database)
-      }
-
-      if (rule.field){
-        promise = m.sync([promise,rbbt.knowledge_base.database_info(database)]).then(function(res){
-          var data = res[0]
-          var db_info = res[1]
-          var fields = db_info.fields
-          var field_pos = fields.indexOf(rule.field)
-
-          if (field_pos < 0){
-            var msg = "Field not found: " + rule.field + ". Options: " + fields.join(", ")
-            throw new Error(msg)
-          }
-
-          var matches = {}
-          forHash(data, function(key, values){
-            var source = values[0]
-            var target = values[1]
-            if (matches[source] === undefined) matches[source] = {}
-            matches[source][target] = values[field_pos+2]
-          })
-          return matches
-        })
-      }else{
-        promise = promise.then(function(data){
-          var matches = {}
-          forHash(data, function(key, values){
-            var source = values[0]
-            var target = values[1]
-            if (matches[source] === undefined) matches[source] = {}
-            matches[source][target] = values.slice(2) 
-          })
-          return matches
-        })
-      }
-
-      if (extract){
-        promise = promise.then(function(matches){
-          return list.codes.map(function(e){ 
-            return extract.call(null, matches, e)
-          })
-        })
-      }
-      else{
-        promise = promise.then(function(matches){
-          return list.codes.map(function(e){ return matches[e] })
-        })
-      }
-    }
-
-    promises.push(promise.then(function(res){list.properties[name] = res}))
-  })
-
-  return m.sync(promises)
-}
-
-rbbt.plots.aes.set_aes = function(list, aes_rules){
-  if (undefined === list.aes) list.aes = {}
-  forArray(aes_rules, function(rule){
-
-    if (rule.entity_type && rule.entity_type != list.type) return 
-
-
-    var name = rule.name
-    var aes = rule.aes
-    var mapper = rule.mapper
-    var mapper_obj = rule.mapper_obj
-    var property = list.properties[name]
-
-    if (rule.value){
-      list.aes[aes] = rule.value
-      return 
-    }
-
-    if (undefined === property && list.info[name]) property = list.info[name]
-    if (undefined === property && name == 'type') property = list.type
-    if (undefined === property && name == 'code') property = list.codes
-    if (undefined === property) return
-
-    list.aes[aes] = aes_module.map_aesthetic(property, mapper, mapper_obj)
-  })
-}
-
-rbbt.plots.aes.update_aes = function(graph_model){
-  var data_promises = []
-  forHash(graph_model.entities, function(type, list){
-    data_promises.push(
-
-      rbbt.plots.aes.get_properties(list, graph_model.rules).
-        then(function(){
-      rbbt.plots.aes.set_aes(list, graph_model.aes_rules)
-        })
-
-    )
-  })
-
-  forHash(graph_model.associations, function(db, list){
-    data_promises.push(
-
-      rbbt.plots.aes.get_properties(list, graph_model.edge_rules).
-        then(function(){
-      rbbt.plots.aes.set_aes(list, graph_model.edge_aes_rules)
-        })
-
-    )
-  })
-  return m.sync(data_promises)
-}
-
-//{{{ SUBSET
-rbbt.plots.aes.subset = function(db,source,target){
-  var promise = rbbt.entity_array.subset(db,source,target)
-  var db_info = KB.database_info(db)
-  return m.sync([promise,db_info]).then(function(d){
-    var associations = d[0]
-    var info = d[1]
-    var fields = ['source', 'target'].concat(info.fields)
-
-    var edges = {}
-    edges.codes = []
-    edges.database = db
-    edges.source_type = info.source
-    edges.target_type = info.target
-    edges.source_info = info.source_entity_options
-    edges.target_info = info.target_entity_options
-    edges.info = {}
-    edges.info.database = db
-    edges.properties = {}
-    edges.aes = {}
-
-    for (i in fields)
-      edges.info[fields[i]] = []
-
-    forHash(associations, function(code, values){
-      edges.codes.push(code)
-      for(i in values){
-        var field = fields[i]
-        var value = values[i]
-        edges.info[field].push(value)
-      }
-    })
-
-    edges.aes['source'] = edges.info['source']
-    edges.aes['target'] = edges.info['target']
-    edges.aes['database'] = db
-
-    return edges
-  })
-}
-
-//{{{ CONSOLIDATION
-
-rbbt.plots.aes.consolidate_list = function(list){
-  var nodes = []
-
-  var codes = list.codes
-  var info = list.info
-  var aes = list.aes
-  var properties = list.properties
-
-  for (i in codes){
-    var node = {}
-    node.code = codes[i]
-    forHash(aes, function(name, values){
-      var value
-      if (typeof values == 'object') value = values[i]
-        else value = values
-          node[name]  = value
-    })
-    nodes.push(node)
-  }
-
-  return nodes
-}
-
-rbbt.plots.aes.consolidate_associations = function(list, database){
-  var edges = []
-  forHash(list,function(code, values){
-    var edge = {}
-    var source_code = values[0]
-    var target_code = values[1]
-
-    edge.source = source_code
-    edge.target = target_code
-    edge.database = database
-
-    edges.push(edge)
-  })
-
-  return edges
-}
-
-rbbt.plots.aes.consolidate_associations = function(list){
-  var nodes = []
-
-  var codes = list.codes
-  var info = list.info
-  var aes = list.aes
-  var properties = list.properties
-  var values = list.properties
-
-  for (i in codes){
-    var node = {}
-    node.code = codes[i]
-    forHash(aes, function(name, values){
-      var value
-      if (typeof values == 'object') value = values[i]
-        else value = values
-          node[name]  = value
-    })
-    nodes.push(node)
-  }
-
-  return nodes
-}
-
-rbbt.plots.aes.consolidate = function(graph_model){
-  var model = {}
-
-  var nodes = []
-
-  forHash(graph_model.entities, function(type, list){
-    var list_nodes = rbbt.plots.aes.consolidate_list(list)
-    for (i in list_nodes) nodes.push(list_nodes[i])
-  })
-
-  var edges = []
-  forHash(graph_model.associations, function(database, list){
-    var list_edges = rbbt.plots.aes.consolidate_associations(list,database)
-    for (i in list_edges) edges.push(list_edges[i])
-  })
-
-  model.nodes = nodes
-  model.edges = edges
-
-  return model
-}
-
-//}}} CONSOLIDATION
-
-
-rbbt.plots.aes.build_d3 = function(graph_model){
-
-  var model = rbbt.plots.aes.consolidate(graph_model)
-
-  var node_index = {}
-  for (i=0; i< model.nodes.length; i++) node_index[model.nodes[i].code] = i
-
-  for (i=0; i< model.edges.length; i++){
-    var edge = model.edges[i]
-    edge.source = node_index[edge.source]
-    edge.target = node_index[edge.target]
-  }
-
-  model.links = model.edges
-  model.edges = undefined
-  model.node_index = node_index
-
-  return model
-}
-
-rbbt.plots.aes.build_cytoscape = function(graph_model){
-  var model = rbbt.plots.aes.consolidate(graph_model)
-
-  var dataSchema = {nodes: [], edges:[]}
-
-  var node_vars = {}
-  for (i in model.nodes){
-    for (p in model.nodes[i]){
-      if (undefined !== model.nodes[i][p])
-        node_vars[p] = typeof model.nodes[i][p]
-    }
-  }
-  for (p in node_vars){
-    dataSchema.nodes.push({name: p, type: node_vars[p]})
-  }
-
-  node_vars = {}
-  for (i in model.edges){
-    for (p in model.edges[i]){
-      if (undefined !== model.edges[i][p])
-        node_vars[p] = typeof model.edges[i][p]
-    }
-  }
-  for (p in node_vars){
-    dataSchema.edges.push({name: p, type: node_vars[p]})
-  }
-
-  var cy_model = {}
-  cy_model.dataSchema = dataSchema
-  cy_model.data = model
-
-  return cy_model
-}
-
-rbbt.plots.aes.build_cytoscapejs = function(graph_model){
-  var model = rbbt.plots.aes.consolidate(graph_model)
-
-  var nodes = []
-  forArray(model.nodes, function(node){
-    nodes.push({data: node})
-  })
-
-  console.log(model.edges)
-  var edges = []
-  forArray(model.edges, function(edge){
-    edges.push({data: edge})
-  })
-
-  var cy_model = {}
-  cy_model.elements = {nodes: nodes, edges: edges}
-
-  console.log(cy_model)
-  return cy_model
-}
-