rbbt-marq 2.0.0 → 2.1.0
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- data/R/CustomDS.R +7 -24
- data/R/GEO.R +1 -21
- data/R/MA.R +253 -223
- data/bin/marq_config +14 -10
- data/install_scripts/CustomDS/Rakefile +1 -1
- data/install_scripts/GEO/Rakefile +2 -1
- data/install_scripts/GEO/series/GSE1814.yaml +44 -0
- data/install_scripts/GEO/series/GSE21.yaml +44 -0
- data/install_scripts/GEO/series/GSE27.yaml +22 -0
- data/install_scripts/GEO/series/GSE5470.yaml +19 -0
- data/install_scripts/rake_includes.rb +22 -5
- data/lib/MARQ/CustomDS.rb +28 -32
- data/lib/MARQ/GEO.rb +77 -91
- data/lib/MARQ/ID.rb +1 -2
- data/lib/MARQ/MADB.rb +31 -25
- data/lib/MARQ/annotations.rb +3 -3
- data/lib/MARQ/main.rb +85 -26
- data/lib/MARQ/rankproduct.rb +14 -8
- metadata +6 -2
metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: rbbt-marq
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3
3
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version: !ruby/object:Gem::Version
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|
4
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-
version: 2.
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4
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+
version: 2.1.0
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Miguel Vazquez
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@@ -9,7 +9,7 @@ autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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|
11
11
|
|
|
12
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-
date: 2010-
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|
12
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+
date: 2010-02-12 00:00:00 +01:00
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13
13
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default_executable: marq_config
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|
14
14
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dependencies:
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|
15
15
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- !ruby/object:Gem::Dependency
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@@ -401,6 +401,7 @@ files:
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401
401
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- install_scripts/GEO/series/GSE1759.yaml
|
|
402
402
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- install_scripts/GEO/series/GSE1760.yaml
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|
403
403
|
- install_scripts/GEO/series/GSE1763.yaml
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|
404
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+
- install_scripts/GEO/series/GSE1814.yaml
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|
404
405
|
- install_scripts/GEO/series/GSE1915.yaml
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|
405
406
|
- install_scripts/GEO/series/GSE1927.yaml
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|
406
407
|
- install_scripts/GEO/series/GSE1941.yaml
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|
@@ -408,6 +409,7 @@ files:
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|
|
408
409
|
- install_scripts/GEO/series/GSE1944.yaml
|
|
409
410
|
- install_scripts/GEO/series/GSE1975.yaml
|
|
410
411
|
- install_scripts/GEO/series/GSE20.yaml
|
|
412
|
+
- install_scripts/GEO/series/GSE21.yaml
|
|
411
413
|
- install_scripts/GEO/series/GSE2107.yaml
|
|
412
414
|
- install_scripts/GEO/series/GSE2159.yaml
|
|
413
415
|
- install_scripts/GEO/series/GSE2246.yaml
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|
@@ -423,6 +425,7 @@ files:
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|
|
423
425
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- install_scripts/GEO/series/GSE2434.yaml
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|
424
426
|
- install_scripts/GEO/series/GSE2526.yaml
|
|
425
427
|
- install_scripts/GEO/series/GSE2579.yaml
|
|
428
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+
- install_scripts/GEO/series/GSE27.yaml
|
|
426
429
|
- install_scripts/GEO/series/GSE2806.yaml
|
|
427
430
|
- install_scripts/GEO/series/GSE2831.yaml
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|
428
431
|
- install_scripts/GEO/series/GSE2832.yaml
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|
@@ -481,6 +484,7 @@ files:
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|
|
481
484
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- install_scripts/GEO/series/GSE5281.yaml
|
|
482
485
|
- install_scripts/GEO/series/GSE5290.yaml
|
|
483
486
|
- install_scripts/GEO/series/GSE5376.yaml
|
|
487
|
+
- install_scripts/GEO/series/GSE5470.yaml
|
|
484
488
|
- install_scripts/GEO/series/GSE5575.yaml
|
|
485
489
|
- install_scripts/GEO/series/GSE5835.yaml
|
|
486
490
|
- install_scripts/GEO/series/GSE5836.yaml
|