rbbt-marq 1.1.0 → 2.0.0
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- data/R/GEO.R +6 -4
- data/R/MA.R +1 -0
- data/bin/marq_config +4 -3
- data/install_scripts/CustomDS/Rakefile +27 -215
- data/install_scripts/GEO/Rakefile +34 -275
- data/install_scripts/rake_includes.rb +236 -0
- data/lib/MARQ/CustomDS.rb +63 -32
- data/lib/MARQ/GEO.rb +99 -63
- data/lib/MARQ/MADB.rb +107 -202
- data/lib/MARQ/annotations.rb +124 -38
- data/lib/MARQ/main.rb +152 -160
- data/lib/MARQ/rankproduct.rb +20 -34
- data/tasks/install.rake +7 -2
- metadata +3 -2
data/tasks/install.rake
CHANGED
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@@ -3,7 +3,12 @@ require 'MARQ'
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3
3
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$datadir = MARQ.datadir
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4
4
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$scriptdir = File.join(MARQ.rootdir, '/install_scripts')
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5
5
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6
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-
task '
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6
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+
task 'rake-includes' do |t|
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7
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+
FileUtils.mkdir_p($datadir)
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8
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+
FileUtils.cp File.join($scriptdir, "rake_includes.rb"), $datadir
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9
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+
end
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10
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+
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11
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+
task 'GEO' => 'rake-includes' do |t|
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7
12
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directory = "#{$datadir}/GEO"
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8
13
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FileUtils.mkdir_p(directory)
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9
14
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%w(Rakefile series).each{|f|
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@@ -12,7 +17,7 @@ task 'GEO' do |t|
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12
17
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FileUtils.mkdir(File.join(directory, "platforms")) unless File.exist? File.join(directory, "platforms")
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13
18
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end
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14
19
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15
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-
task 'CustomDS' do |t|
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20
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+
task 'CustomDS' => 'rake-includes' do |t|
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16
21
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directory = "#{$datadir}/CustomDS"
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17
22
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FileUtils.mkdir_p(directory)
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18
23
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Dir.glob($scriptdir + '/CustomDS/*').each{|f|
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: rbbt-marq
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version:
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4
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+
version: 2.0.0
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Miguel Vazquez
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@@ -9,7 +9,7 @@ autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
11
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12
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-
date:
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12
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+
date: 2010-01-30 00:00:00 +01:00
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13
13
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default_executable: marq_config
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14
14
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dependencies:
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15
15
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- !ruby/object:Gem::Dependency
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@@ -555,6 +555,7 @@ files:
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555
555
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- install_scripts/GEO/series/GSE965.yaml
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556
556
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- install_scripts/GEO/series/GSE966.yaml
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557
557
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- install_scripts/GEO/series/GSE993.yaml
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558
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+
- install_scripts/rake_includes.rb
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558
559
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- lib/MARQ.rb
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559
560
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- lib/MARQ/CustomDS.rb
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560
561
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- lib/MARQ/GEO.rb
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