rbbt-image 0.1.40 → 0.2.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: db006b39f539ccfe01887fe76863904209abc11ab2caf2c53d9b77b35f463662
-  data.tar.gz: efdead2dfa7cd0d79303524e415cf1acdcc3db2cdeb1aa562e268d44e9f4a372
+  metadata.gz: bd869e4ef0be90e31b7336f2dda2776fefb6449e1423d2d96e5ce9daf09b029f
+  data.tar.gz: 1b60f792b06bd633e39b6fd917c6075b333b06fda808e1a5a1c03c4b97507dac
 SHA512:
-  metadata.gz: b481e7a4daf5a2f4155959d7e2b53aeee8d8cb2da95ba252df5f590407679bfe4b5faf70f736ffd735b8bf1cc08717fb8b80471042649a9a4ffc8a2aafd25b67
-  data.tar.gz: bb5db5c1d64cecdd49e8bb8e1557c296e2a29e36be7ce3fa3c12644e40448157456b988ed5c4ab1a5e170f14bfec4978768422444b2206a239bbcd0fce84cea1
+  metadata.gz: 8269c1f224f9292c164e075893f95b68ee4bd93d5e0ce008db17e819fa54b05b8e3abed9392161189dbbf73bbe377be81c251c3f05bba8762077b756c3566b6c
+  data.tar.gz: b8f112f632dbdbf54d4fe762589b2397eaf1852727faeb2fa8836c4c8bcfbe7fb1b6b84eda747ba5ba182fc9af6763b625f3ba83b339b87c77ccdb00cbd1bab6

data/bin/build_rbbt_provision_sh.rb

@@ -39,6 +39,8 @@ $ #{$0} [options]
 -dv--docker_volumnes* List of volumes to set-up in Docker
 --nocolor Prevent rbbt from using colors and control sequences in the logs while provisioning
 --nobar Prevent rbbt from using progress bars while provisioning
+-g--gems* Custom gems to install
+-sp--system_packages* Custom system packages
 EOF
 
 if options[:help]
@@ -58,8 +60,7 @@ script_dir = File.join(root_dir, "share/provision_scripts/")
 #  options[:skip_bootstrap] = true
 #end
 
-all_steps = %w(functions base_system tokyocabinet ruby_custom gem java R_custom R perl_custom python_custom python user slurm_loopback hacks)
-
+all_steps = %w(functions base_system tokyocabinet ruby_custom gem custom_gems java R_custom R R_packages perl_custom python_custom python user slurm_loopback hacks)
 
 do_steps = options.include?("do")? (all_steps & options[:do].split(",")) : all_steps
 not_do_steps = options.include?(:not_do)? options[:not_do].split(",") : all_steps - do_steps
@@ -85,7 +86,11 @@ VARIABLES[:REMOTE_WORKFLOWS] = options[:remote_workflows].split(/[\s,]+/)*" " if
 VARIABLES[:RBBT_NOCOLOR] = "true" if options[:nocolor]
 VARIABLES[:RBBT_NO_PROGRESS] = "true" if options[:nobar]
 
-options[:ruby_version] ||= "2.6.4"
+VARIABLES[:RUBY_VERSION] = options[:ruby_version] ||= "2.6.4"
+VARIABLES[:CUSTOM_GEMS] = options[:gems]
+VARIABLES[:CUSTOM_SYSTEM_PACKAGES] = options[:system_packages]
+
+do_steps << 'custom_gems' if options[:gems]
 
 provision_script =<<-EOF
 #!/bin/bash -x
@@ -93,9 +98,14 @@ provision_script =<<-EOF
 # PROVISION FILE
 echo "CMD: #{File.basename($0) + " " + orig_argv.collect{|a| a =~ /\s/ ? "\'#{a}\'" : a }.join(" ")}"
 
-test -f /etc/profile && source /etc/profile
-test -f /etc/rbbt_environment && source /etc/rbbt_environment
+test -f /etc/profile && . /etc/profile
+test -f /etc/rbbt_environment && . /etc/rbbt_environment
 
+#{
+VARIABLES.collect do |variable,value|
+  "export " << ([variable,'"' << value.to_s << '"'] * "=")
+end * "\n"
+}
 EOF
 
 all_steps.each_with_index do |step,i|
@@ -128,9 +138,11 @@ all_steps.each_with_index do |step,i|
                           
                           echo "6.4. Install and bootstrap"
                           #{File.read(script_dir + "bootstrap.sh")}
-                          
+                          #
                           echo "6.5. Migrate shared files"
                           #{File.read(script_dir + "migrate.sh")}
+                          
+                          rm -Rf ~/.rbbt/tmp/
                         EOF
 
                         <<~EOF
@@ -159,8 +171,9 @@ all_steps.each_with_index do |step,i|
                           #{user_script}
                           EUSER
 
-
+                          chmod 777 -R /usr/local/
                           su -l -c "sh $user_script" #{USER}
+
                         EOF
                       else
                         File.read(script_dir + "#{step}.sh") 

data/share/provision_scripts/R.sh

@@ -3,64 +3,10 @@
 # INSTALL
 # =======
 
-# R packages
-# ----------
-
-function R_install_packages(){
-  pkgs="'$1'"
-  shift
-  for p in $@; do
-    pkgs="$pkgs, '$p'"
-  done
-  echo "install.packages(c($pkgs), repos='http://cran.us.r-project.org')" | R --vanilla --quiet
-}
-
-function R_biocLite(){
-  pkgs="'$1'"
-  shift
-  for p in $@; do
-    echo "BiocManager::install(c('$p'))" | R --vanilla --quiet
-  done
-}
-
-function R_CMD_install(){
-  url=$1
-  name=$2
-  wget "$url" -O /tmp/R-pkg-"$name".tar.gz
-  R CMD INSTALL /tmp/R-pkg-"$name".tar.gz
-}
-
 
 export R_HOME=$(R RHOME)
 export R_INCLUDE="$R_HOME/../../include/R"
-gem install rsruby -- --with-R-dir=$R_HOME --with-R-include=$R_INCLUDE
+gem install rsruby -- --with-R-dir=$R_HOME --with-R-include=$R_INCLUDE || gem install rsruby -- --with-R-dir=$R_HOME --with-R-include=/usr/share/R/include/
 
 echo 'install.packages("Rserve", repos="http://www.rforge.net/")' | R --vanilla --quiet
 gem install rserve-client
-
-#R_install_packages 'Rcpp'
-#R_CMD_install 'https://cran.r-project.org/src/contrib/Archive/plyr/plyr_1.8.1.tar.gz' plyr
-
-#R_install_packages 'MASS' 'nnet'
-#R_CMD_install 'https://cran.r-project.org/src/contrib/Archive/car/car_2.0-22.tar.gz' car
-
-R_install_packages 'tidyverse'
-
-R_install_packages 'RJSONIO' 'XML' 'digest' 'gtable' 'reshape2' 'scales' 'proto'
-#R_CMD_install 'https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_1.0.0.tar.gz' ggplot2
-
-R_install_packages 'BiocManager'
-R_biocLite Biobase
-
-R_install_packages NMF Cairo drc gridSVG ggthemes mclust randomForest viper
-
-R_install_packages pheatmap VennDiagram Hmisc pls gridSVG
-
-R_install_packages UpSetR
-
-R_biocLite limma viper
-
-R_install_packages pROC txtplot
-
-rm /tmp/R-pkg-*.tar.gz
-

data/share/provision_scripts/R_custom.sh

@@ -16,7 +16,8 @@ make && make install
 
 echo "# For RSRuby gem " >> /etc/rbbt_environment
 echo 'export R_HOME="/usr/local/lib/R"' >> /etc/rbbt_environment
-echo '_add_path "$R_HOME/bin/" # Rserver' >> /etc/rbbt_environment
-echo '_add_lib_path "$R_HOME/lib/" # Rserver' >> /etc/rbbt_environment
+echo 'PATH="$R_HOME/bin/:$PATH" # Rserver' >> /etc/rbbt_environment
+echo 'LD_LIBRARY_PATH="$R_HOME/lib/:$LD_LIBRARY_PATH" # Rserver' >> /etc/rbbt_environment
+echo 'LD_RUN_PATH="$R_HOME/lib/:$LD_RUN_PATH" # Rserver' >> /etc/rbbt_environment
 
 . /etc/rbbt_environment

data/share/provision_scripts/R_packages.sh

@@ -0,0 +1,51 @@
+#!/bin/bash -x
+
+# INSTALL
+# =======
+
+# R packages
+# ----------
+
+R_install_packages(){
+  pkgs="'$1'"
+  shift
+  for p in $@; do
+    pkgs="$pkgs, '$p'"
+  done
+  echo "install.packages(c($pkgs), repos='http://cran.us.r-project.org')" | R --vanilla --quiet
+}
+
+R_biocLite(){
+  pkgs="'$1'"
+  shift
+  for p in $@; do
+    echo "BiocManager::install(c('$p'))" | R --vanilla --quiet
+  done
+}
+
+R_CMD_install(){
+  url=$1
+  name=$2
+  wget "$url" -O /tmp/R-pkg-"$name".tar.gz
+  R CMD INSTALL /tmp/R-pkg-"$name".tar.gz
+}
+
+R_install_packages 'tidyverse'
+
+R_install_packages 'RJSONIO' 'XML' 'digest' 'gtable' 'reshape2' 'scales' 'proto'
+
+R_install_packages 'BiocManager'
+R_biocLite Biobase
+
+R_install_packages NMF Cairo drc gridSVG ggthemes mclust randomForest viper
+
+R_install_packages pheatmap VennDiagram Hmisc pls gridSVG
+
+R_install_packages UpSetR
+
+R_biocLite limma viper
+
+R_install_packages pROC txtplot
+
+rm /tmp/R-pkg-*.tar.gz
+

data/share/provision_scripts/alpine_basic_setup.sh

@@ -2,7 +2,10 @@
 apk add ruby ruby-dev  # Ruby
 apk add git make gcc g++ cmake # Building
 apk add bzip2 bzip2-dev zlib zlib-dev krb5 gcompat # Libs
+apk add openssl1.1-compat-dev openssl1.1-compat # openssl
 apk add bash openssh-client wget curl rsync gnu-libiconv  # Tools
+ 
+echo $CUSTOM_SYSTEM_PACKAGES | sed 's/,/\n/g' | xargs apk add
 
 gem install rbbt-util rbbt-sources
 gem install RubyInline

data/share/provision_scripts/alpine_extended_setup.sh

@@ -4,6 +4,8 @@ apk add git make gcc g++ cmake # Building
 apk add bzip2 bzip2-dev zlib zlib-dev krb5 gcompat # Libs
 apk add bash openssh-client wget curl rsync gnu-libiconv  # Tools
 
+echo $CUSTOM_SYSTEM_PACKAGES | sed 's/,/\n/g' | xargs apk add
+
 gem install rbbt-util rbbt-sources
 gem install RubyInline
 

data/share/provision_scripts/alpine_setup.sh

@@ -1,9 +1,11 @@
 # Basic alpine setup
 apk add ruby ruby-dev  # Ruby
 apk add git make gcc g++ cmake # Building
-apk add bzip2 bzip2-dev zlib zlib-dev krb5 gcompat # Libs
+apk add bzip2 bzip2-dev zlib zlib-dev krb5 gcompat openssl openssl1.1-compat openssl1.1-compat-dev # Libs
 apk add bash openssh-client wget curl rsync gnu-libiconv  # Tools
 
+echo $CUSTOM_SYSTEM_PACKAGES | sed 's/,/\n/g' | xargs apk add
+
 gem install rbbt-util rbbt-sources
 gem install RubyInline
 

data/share/provision_scripts/bootstrap.sh

@@ -5,25 +5,26 @@
 
 export RBBT_WORKFLOW_AUTOINSTALL=true
 export RBBT_LOG=0
+#export PIP_TARGET="/usr/local/python"
 
 for workflow in $BOOTSTRAP_WORKFLOWS; do
     rbbt workflow install $workflow 
 
     pip_requirements_file=$(rbbt_find.rb -w $workflow requirements.pip --nocolor)
-    test -z $pip_requirements_file || pip install -r $pip_requirements_file
+    test -z $pip_requirements_file || pip install -r $pip_requirements_file || pip install --break-system-packages -r $pip_requirements_file
     unset pip_requirements_file
 
     pip_requirements_file2=$(rbbt_find.rb -w $workflow requirements.pip2 --nocolor)
-    test -z $pip_requirements_file2 || pip install -r $pip_requirements_file2
+    test -z $pip_requirements_file2 || pip install -r $pip_requirements_file2 || pip install --break-system-packages -r $pip_requirements_file2
     unset pip_requirements_file2
 
     pip_requirements_file3=$(rbbt_find.rb -w $workflow requirements.pip3 --nocolor)
-    test -z $pip_requirements_file3 || pip install -r $pip_requirements_file3
+    test -z $pip_requirements_file3 || pip install -r $pip_requirements_file3 || pip install --break-system-packages -r $pip_requirements_file3
     unset pip_requirements_file3
 done
 
 for workflow in $BOOTSTRAP_WORKFLOWS; do
     echo "Bootstrapping $workflow on $BOOTSTRAP_CPUS CPUs"
-    [ -d $HOME/.rbbt/tmp/ ] || mkdir -p $HOME/.rbbt/tmp/
+    test -d $HOME/.rbbt/tmp/ || mkdir -p $HOME/.rbbt/tmp/
     rbbt workflow cmd $workflow bootstrap --config_keys "cpus $BOOTSTRAP_CPUS bootstrap" > $HOME/.rbbt/tmp/${workflow}.bootstrap.log
 done

data/share/provision_scripts/custom_gems.sh

@@ -0,0 +1 @@
+echo $CUSTOM_GEMS | sed 's/,/\n/g' | xargs gem install

data/share/provision_scripts/gem.sh

@@ -30,7 +30,7 @@ gem install --no-document --force \
 echo "* Installing extra gems for web stuff"
 # Extra things for web interface
 gem install --no-document \
-    sinatra puma \
+    sinatra puma rack \
     rest-client \
     kramdown pandoc pandoc-ruby \
     spreadsheet rubyXL \

data/share/provision_scripts/migrate.sh

@@ -3,4 +3,3 @@ rbbt migrate ~/.rbbt/var/ local --delete
 rbbt migrate ~/.rbbt/share/ local --delete
 rbbt migrate ~/.rbbt/software/ local --delete
 rbbt migrate ~/.rbbt/workflows/ local --delete
-rm -Rf ~/.rbbt/tmp/

data/share/provision_scripts/python.sh

@@ -2,3 +2,5 @@ gem install pycall
 pip install --upgrade pip
 pip install ansible
 pip install pandas numpy matplotlib
+
+test -d /usr/local/miniconda3/ && chmod 777 -R /usr/local/miniconda3/

data/share/provision_scripts/python_custom.sh

@@ -4,19 +4,22 @@ echo "# Python conda " >> /etc/rbbt_environment
 bash /tmp/miniconda.sh -b -p /usr/local/miniconda3
 
 ln -s /usr/local/miniconda3/bin/conda /usr/local/bin/conda
-echo '_add_path "/usr/local/miniconda3/bin/"' >> /etc/rbbt_environment
+echo 'PATH="/usr/local/miniconda3/bin/:$PATH"' >> /etc/rbbt_environment
 
 conda create --yes -n python2 python=2.7 pip
 
 conda create --yes -n python3 python=3.6 pip
 
-echo '_add_path "/usr/local/miniconda3/envs/python2/bin/"' >> /etc/rbbt_environment
-echo '_add_path "/usr/local/miniconda3/envs/python3/bin/"' >> /etc/rbbt_environment
+chmod 777 -R /usr/local/miniconda3/
+
+echo 'PATH="/usr/local/miniconda3/envs/python2/bin/:$PATH"' >> /etc/rbbt_environment
+echo 'PATH="/usr/local/miniconda3/envs/python3/bin/:$PATH"' >> /etc/rbbt_environment
 echo '' >> /etc/rbbt_environment
 echo '# Setup conda environment' >> /etc/rbbt_environment
 echo 'export CONDA_PKGS_DIRS=~/tmp/conda/pkgs' >> /etc/rbbt_environment
 echo '. /usr/local/miniconda3/etc/profile.d/conda.sh' >> /etc/rbbt_environment
+echo 'conda activate python3' >> /etc/rbbt_environment
 
 rm -Rf /usr/local/miniconda3/pkgs
-source /etc/rbbt_environment
+. /etc/rbbt_environment
 

data/share/provision_scripts/ruby_custom.sh

@@ -5,10 +5,12 @@
 
 _small_version=`echo $RUBY_VERSION | cut -f 1,2 -d.`
 
-[ -d /tmp/ruby-install ] || mkdir /tmp/ruby-install
+[ -d /usr/local/scr/ruby-install ] || mkdir -p /usr/local/src/ruby-install
 
 _prewd="$(pwd)"
-cd /tmp/ruby-install
+cd /usr/local/scr/ruby-install
+
+gem list --no-versions > gem.list
 
 wget https://cache.ruby-lang.org/pub/ruby/$_small_version/ruby-${RUBY_VERSION}.tar.gz -O "ruby.tar.gz"
 tar -xvzf ruby.tar.gz
@@ -16,10 +18,16 @@ cd ruby-*/
 ./configure --prefix=/usr/local --enable-shared
 make && make install
 
+cd ..
+
+for p in `cat gem.list`; do
+ /usr/local/bin/gem install $p
+done
+
 unset _small_version
 
 cd "$_prewd"
-rm -Rf /tmp/ruby-install
+#rm -Rf /tmp/ruby-install
 
 #\curl -sSL https://get.rvm.io | bash -s stable
 #source /etc/profile.d/rvm.sh

data/share/provision_scripts/tokyocabinet.sh

@@ -5,7 +5,8 @@
 
 mkdir -p /opt/src/
 cd /opt/src/
-wget http://fallabs.com/tokyocabinet/tokyocabinet-1.4.48.tar.gz -O "tokyocabinet.tar.gz"
+#wget http://fallabs.com/tokyocabinet/tokyocabinet-1.4.48.tar.gz -O "tokyocabinet.tar.gz"
+wget "https://b2drop.bsc.es/index.php/s/5SP3wYCyNwFE2b3/download" -O "tokyocabinet.tar.gz"
 tar -xvzf tokyocabinet.tar.gz
 cd tokyocabinet-1.4.48
 ./configure --prefix=/usr/local

data/share/provision_scripts/ubuntu_basic_setup.sh

@@ -0,0 +1,37 @@
+# Basic ubuntu setup
+apt-get -y update
+apt-get -y install software-properties-common
+
+export DEBIAN_FRONTEND=noninteractive
+
+apt-get -y install \
+  ruby ruby-dev \
+  git make gcc g++ cmake autotools-dev autoconf automake \
+  zlib1g-dev libbz2-dev libreadline-dev \
+  openssl \
+  libxml2-dev libfontconfig1-dev \
+  liblzma5 liblzma-dev libcurl4-openssl-dev \
+  build-essential zlib1g-dev libssl-dev libyaml-dev libffi-dev \
+  locales \
+  bash openssh-client wget curl rsync libtokyocabinet-dev
+
+apt-get -y install \
+  python3 python3-pip python-is-python3
+
+apt-get -y install \
+  r-base r-base-dev
+
+gem install rbbt-util rbbt-sources
+gem install RubyInline
+
+gem install specific_install hoe minitest
+gem specific_install -l https://github.com/mikisvaz/lockfile.git
+gem specific_install -l https://github.com/mikisvaz/rubyinline.git
+
+rm -Rf /usr/lib/ruby/gems/*/doc /usr/lib/ruby/gems/*/cache
+
+grep rbbt_environment /etc/rbbt_environment || echo "[ -f ~/.rbbt/etc/environment ] && . ~/.rbbt/etc/environment" >> "/etc/rbbt_environment"
+grep rbbt_environment /etc/profile || echo echo "source /etc/rbbt_environment" >> /etc/profile
+
+
+echo $CUSTOM_SYSTEM_PACKAGES | sed 's/,/\n/g' | xargs apt-get -y install

data/share/provision_scripts/ubuntu_setup.sh

@@ -1,68 +1,3 @@
-#!/bin/bash -x
-
-# INSTALL
-# =======
-
-#cat << 'EOF' > /etc/rbbt_environment 
-#_var_content(){
-#    var=$1
-#    eval echo "$"$(echo $var)
-#}
-#
-#_append_with_colon(){
-#    var=$1
-#    value=$2
-#
-#    current=`_var_content $var`
-#
-#    if ! echo $current | grep "\(^\|:\)$value\(:\|$\)" >/dev/null 2>&1; then
-#        eval $(echo $var)="\"$current:$value\""
-#    fi
-#}
-#
-#_append_with_space(){
-#    var=$1
-#    value=$2
-#
-#    current=`_var_content $var`
-#
-#    if ! echo $current | grep "\(^\| \)$value\( \|$\)" >/dev/null 2>&1; then
-#        eval $(echo $var)="\"$current:$value\""
-#    fi
-#}
-#
-#_prepend_with_colon(){
-#    var=$1
-#    value=$2
-#
-#    current=`_var_content $var`
-#
-#    if ! echo $current | grep "\(^\|:\)$value\(:\|$\)" >/dev/null 2>&1; then
-#        eval $(echo $var)="\"$value:$current\""
-#    fi
-#}
-#
-#_prepend_with_space(){
-#    var=$1
-#    value=$2
-#
-#    current=`_var_content $var`
-#
-#    if ! echo $current | grep "\(^\| \)$value\( \|$\)" >/dev/null 2>&1; then
-#        eval $(echo $var)="\"$value $current\""
-#    fi
-#}
-#
-#_add_path(){
-#  _prepend_with_colon PATH "${1%/}"
-#}
-#
-#_add_libpath(){
-#  _prepend_with_colon LD_LIBRARY_PATH "${1%/}"
-#  _prepend_with_colon LD_RUN_PATH "${1%/}"
-#}
-#EOF
-
 # Basic system requirements
 # -------------------------
 apt-get -y update
@@ -71,7 +6,6 @@ apt-get -y install software-properties-common
 apt-get -y update
 apt-get -y update
 DEBIAN_FRONTEND=noninteractive apt-get -y install \
-  vim \
   wget \
   libc6 \
   time numactl xvfb \
@@ -85,6 +19,7 @@ DEBIAN_FRONTEND=noninteractive apt-get -y install \
   tcsh gawk \
   ansible \
   pandoc \
+  locales \
   libtbb-dev
 
 #add-apt-repository ppa:george-edison55/cmake-3.x
@@ -96,6 +31,8 @@ apt-get -y install cmake
 apt-get -y install \
   libgmp-dev libboost-all-dev 
 
+apt-get install ruby ruby-dev
+
 # This link was broken for some reason
 rm /usr/lib/R/bin/Rserve
 ln -s /usr/lib/R/site-library/Rserve/libs/Rserve /usr/lib/R/bin/Rserve

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-image
 version: !ruby/object:Gem::Version
-  version: 0.1.40
+  version: 0.2.0
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2023-03-28 00:00:00.000000000 Z
+date: 2025-02-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rbbt-util
@@ -42,10 +42,12 @@ files:
 - share/provision_scripts/Dockerfile.R-packages
 - share/provision_scripts/R.sh
 - share/provision_scripts/R_custom.sh
+- share/provision_scripts/R_packages.sh
 - share/provision_scripts/alpine_basic_setup.sh
 - share/provision_scripts/alpine_extended_setup.sh
 - share/provision_scripts/alpine_setup.sh
 - share/provision_scripts/bootstrap.sh
+- share/provision_scripts/custom_gems.sh
 - share/provision_scripts/functions.sh
 - share/provision_scripts/gem.sh
 - share/provision_scripts/hacks.sh
@@ -57,6 +59,7 @@ files:
 - share/provision_scripts/ruby_custom.sh
 - share/provision_scripts/slurm_loopback.sh
 - share/provision_scripts/tokyocabinet.sh
+- share/provision_scripts/ubuntu_basic_setup.sh
 - share/provision_scripts/ubuntu_setup.sh
 - share/provision_scripts/user.sh
 - share/provision_scripts/variables.sh
@@ -79,7 +82,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.4.8
+rubygems_version: 3.5.23
 signing_key: 
 specification_version: 4
 summary: Build docker and Vagrant (VM) images