rb-libsvm 1.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.gitignore +6 -0
- data/.rvmrc +1 -0
- data/Gemfile +4 -0
- data/Gemfile.lock +28 -0
- data/MIT-LICENSE +20 -0
- data/README.textile +37 -0
- data/Rakefile +13 -0
- data/ext/rb-libsvm/extconf.rb +46 -0
- data/ext/rb-libsvm/libsvm.c +489 -0
- data/ext/rb-libsvm/ruby-ext.h +42 -0
- data/ext/rb-libsvm/svm.cpp +3072 -0
- data/ext/rb-libsvm/svm.h +101 -0
- data/ferret_valgrind.supp +478 -0
- data/lib/libsvm.rb +63 -0
- data/lib/rb-libsvm/version.rb +3 -0
- data/rb-libsvm.gemspec +27 -0
- data/spec/model_spec.rb +95 -0
- data/spec/node_spec.rb +68 -0
- data/spec/parameter_spec.rb +76 -0
- data/spec/problem_spec.rb +37 -0
- data/spec/spec_helper.rb +10 -0
- data/spec/usage_spec.rb +37 -0
- metadata +97 -0
data/ext/rb-libsvm/svm.h
ADDED
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@@ -0,0 +1,101 @@
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#ifndef _LIBSVM_H
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#define _LIBSVM_H
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#define LIBSVM_VERSION 310
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#ifdef __cplusplus
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extern "C" {
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#endif
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extern int libsvm_version;
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struct svm_node
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{
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int index;
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double value;
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};
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struct svm_problem
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{
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int l;
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double *y;
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struct svm_node **x;
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};
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enum { C_SVC, NU_SVC, ONE_CLASS, EPSILON_SVR, NU_SVR }; /* svm_type */
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enum { LINEAR, POLY, RBF, SIGMOID, PRECOMPUTED }; /* kernel_type */
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struct svm_parameter
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{
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int svm_type;
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int kernel_type;
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int degree; /* for poly */
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double gamma; /* for poly/rbf/sigmoid */
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double coef0; /* for poly/sigmoid */
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/* these are for training only */
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double cache_size; /* in MB */
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double eps; /* stopping criteria */
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double C; /* for C_SVC, EPSILON_SVR and NU_SVR */
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int nr_weight; /* for C_SVC */
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int *weight_label; /* for C_SVC */
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double* weight; /* for C_SVC */
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double nu; /* for NU_SVC, ONE_CLASS, and NU_SVR */
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double p; /* for EPSILON_SVR */
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int shrinking; /* use the shrinking heuristics */
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int probability; /* do probability estimates */
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};
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//
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// svm_model
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//
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struct svm_model
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{
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struct svm_parameter param; /* parameter */
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int nr_class; /* number of classes, = 2 in regression/one class svm */
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int l; /* total #SV */
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struct svm_node **SV; /* SVs (SV[l]) */
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double **sv_coef; /* coefficients for SVs in decision functions (sv_coef[k-1][l]) */
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double *rho; /* constants in decision functions (rho[k*(k-1)/2]) */
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double *probA; /* pariwise probability information */
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double *probB;
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/* for classification only */
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int *label; /* label of each class (label[k]) */
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int *nSV; /* number of SVs for each class (nSV[k]) */
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/* nSV[0] + nSV[1] + ... + nSV[k-1] = l */
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/* XXX */
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int free_sv; /* 1 if svm_model is created by svm_load_model*/
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/* 0 if svm_model is created by svm_train */
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};
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struct svm_model *svm_train(const struct svm_problem *prob, const struct svm_parameter *param);
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void svm_cross_validation(const struct svm_problem *prob, const struct svm_parameter *param, int nr_fold, double *target);
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int svm_save_model(const char *model_file_name, const struct svm_model *model);
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struct svm_model *svm_load_model(const char *model_file_name);
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int svm_get_svm_type(const struct svm_model *model);
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int svm_get_nr_class(const struct svm_model *model);
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void svm_get_labels(const struct svm_model *model, int *label);
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double svm_get_svr_probability(const struct svm_model *model);
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double svm_predict_values(const struct svm_model *model, const struct svm_node *x, double* dec_values);
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double svm_predict(const struct svm_model *model, const struct svm_node *x);
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double svm_predict_probability(const struct svm_model *model, const struct svm_node *x, double* prob_estimates);
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void svm_free_model_content(struct svm_model *model_ptr);
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void svm_free_and_destroy_model(struct svm_model **model_ptr_ptr);
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void svm_destroy_param(struct svm_parameter *param);
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const char *svm_check_parameter(const struct svm_problem *prob, const struct svm_parameter *param);
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int svm_check_probability_model(const struct svm_model *model);
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void svm_set_print_string_function(void (*print_func)(const char *));
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#ifdef __cplusplus
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}
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#endif
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#endif /* _LIBSVM_H */
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@@ -0,0 +1,478 @@
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{
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Ruby::mark_locations_array
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Memcheck:Cond
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fun:mark_locations_array
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}
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{
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Ruby::str_make_independent.leak
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Memcheck:Leak
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fun:malloc
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fun:ruby_xmalloc
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fun:str_make_independent
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}
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{
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Ruby::gc_mark_children.st_lookup.value4
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Memcheck:Value4
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fun:st_lookup
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fun:rb_mark_generic_ivar
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fun:gc_mark_children
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}
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{
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Ruby::env_aset.leak1
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Memcheck:Leak
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fun:realloc
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fun:ruby_xrealloc
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fun:ruby_setenv
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fun:env_aset
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}
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{
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Ruby::env_aset.leak2
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fun:malloc
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fun:ruby_xmalloc
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fun:ruby_strdup
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fun:ruby_setenv
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fun:env_aset
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}
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{
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Ruby::str_new.leak
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fun:malloc
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fun:ruby_xmalloc
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fun:str_new
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}
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{
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Ruby::gc_mark_children.st_lookup.cond
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Memcheck:Cond
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fun:st_lookup
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fun:rb_mark_generic_ivar
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fun:gc_mark_children
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}
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{
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Ruby::gc_mark.cond
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Memcheck:Cond
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fun:gc_mark
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}
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{
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Ruby::gc_mark.value4
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Memcheck:Value4
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fun:gc_mark
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}
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{
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Ruby::gc_mark.addr4
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Memcheck:Addr4
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fun:gc_mark
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}
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{
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Ruby::gc_mark_children.addr1
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fun:gc_mark_children
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}
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{
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Memcheck:Addr4
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fun:gc_mark_children
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}
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{
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Ruby::gc_mark_children.cond
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fun:gc_mark_children
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}
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{
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Ruby::gc_mark_children.value4
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fun:gc_mark_children
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}
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{
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Ruby::scope_dup.leak
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fun:malloc
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fun:scope_dup
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}
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{
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Ruby::pthread.leak
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fun:malloc
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fun:rwlock_have_already
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fun:pthread_rwlock_rdlock
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}
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{
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Ruby::str_format.leak
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fun:realloc
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fun:ruby_xrealloc
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fun:rb_str_resize
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fun:rb_f_sprintf
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fun:rb_str_format
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fun:call_cfunc
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fun:rb_call0
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fun:rb_call
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fun:rb_eval
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fun:rb_eval
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}
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{
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fun:calloc
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fun:st_init_table_with_size
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fun:st_init_table
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fun:st_init_numtable
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fun:rb_ivar_set
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fun:rb_eval
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fun:rb_call0
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fun:rb_call
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fun:rb_obj_call_init
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fun:rb_class_new_instance
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fun:call_cfunc
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fun:rb_call0
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}
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{
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Ruby::re_compile.leak2
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fun:malloc
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fun:ruby_xmalloc
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fun:ruby_re_compile_pattern
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}
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{
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Ruby::rb_intern.leak
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fun:malloc
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fun:st_add_direct
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fun:rb_intern
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fun:rb_str_intern
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fun:call_cfunc
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fun:rb_call0
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fun:rb_call
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fun:rb_eval
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fun:rb_eval
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fun:rb_yield_0
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fun:rb_yield
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fun:int_dotimes
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}
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{
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Ruby::copy_node_scope.leak
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fun:malloc
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fun:ruby_xmalloc
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fun:copy_node_scope
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fun:rb_eval
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}
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{
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Ruby::eval_str_append.leak
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fun:realloc
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fun:ruby_xrealloc
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fun:rb_str_buf_append
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}
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{
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}
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{
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fun:ruby_xrealloc
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fun:rb_ary_store
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}
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{
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fun:h_new_str
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}
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{
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fun:ary_new
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fun:rb_ary_new
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}
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{
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Ruby::hash_new.leak
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fun:calloc
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fun:st_init_table_with_size
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fun:st_init_table
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}
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{
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GLIBC.cond
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obj:/lib/ld-2.3.6.so
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}
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{
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GLIBC.value4
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obj:/lib/ld-2.3.6.so
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}
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{
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GLIBC.addr4
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obj:/lib/ld-2.3.6.so
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}
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{
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thread_clone
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Memcheck:Param
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clone(child_tidptr)
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fun:clone
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fun:clone
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}
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{
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GLIBC_2::dl_load
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Memcheck:Leak
|
|
231
|
+
fun:malloc
|
|
232
|
+
obj:/lib/ld-2.3.6.so
|
|
233
|
+
obj:/lib/ld-2.3.6.so
|
|
234
|
+
obj:/lib/ld-2.3.6.so
|
|
235
|
+
fun:dl_open_worker
|
|
236
|
+
obj:/lib/ld-2.3.6.so
|
|
237
|
+
fun:_dl_open
|
|
238
|
+
fun:dlopen_doit
|
|
239
|
+
obj:/lib/ld-2.3.6.so
|
|
240
|
+
fun:_dlerror_run
|
|
241
|
+
fun:dlopen@@GLIBC_2.1
|
|
242
|
+
fun:dln_load
|
|
243
|
+
}
|
|
244
|
+
{
|
|
245
|
+
Ruby::rb_load
|
|
246
|
+
Memcheck:Leak
|
|
247
|
+
fun:calloc
|
|
248
|
+
fun:_dlerror_run
|
|
249
|
+
fun:dlopen@@GLIBC_2.1
|
|
250
|
+
fun:dln_load
|
|
251
|
+
fun:rb_require_safe
|
|
252
|
+
fun:rb_f_require
|
|
253
|
+
fun:call_cfunc
|
|
254
|
+
fun:rb_call0
|
|
255
|
+
fun:rb_call
|
|
256
|
+
fun:rb_eval
|
|
257
|
+
fun:rb_eval
|
|
258
|
+
fun:rb_load
|
|
259
|
+
}
|
|
260
|
+
{
|
|
261
|
+
Ruby::rb_f_require
|
|
262
|
+
Memcheck:Leak
|
|
263
|
+
fun:malloc
|
|
264
|
+
fun:add_to_global
|
|
265
|
+
fun:dl_open_worker
|
|
266
|
+
obj:/lib/ld-2.3.6.so
|
|
267
|
+
fun:_dl_open
|
|
268
|
+
fun:dlopen_doit
|
|
269
|
+
obj:/lib/ld-2.3.6.so
|
|
270
|
+
fun:_dlerror_run
|
|
271
|
+
fun:dlopen@@GLIBC_2.1
|
|
272
|
+
fun:dln_load
|
|
273
|
+
fun:rb_require_safe
|
|
274
|
+
fun:rb_f_require
|
|
275
|
+
}
|
|
276
|
+
{
|
|
277
|
+
Ruby::add_heap
|
|
278
|
+
Memcheck:Leak
|
|
279
|
+
fun:malloc
|
|
280
|
+
fun:add_heap
|
|
281
|
+
fun:ruby_init
|
|
282
|
+
fun:main
|
|
283
|
+
}
|
|
284
|
+
{
|
|
285
|
+
Ruby::rb_require_safe
|
|
286
|
+
Memcheck:Leak
|
|
287
|
+
fun:malloc
|
|
288
|
+
obj:/lib/ld-2.3.6.so
|
|
289
|
+
obj:/lib/ld-2.3.6.so
|
|
290
|
+
fun:dl_open_worker
|
|
291
|
+
obj:/lib/ld-2.3.6.so
|
|
292
|
+
fun:_dl_open
|
|
293
|
+
fun:dlopen_doit
|
|
294
|
+
obj:/lib/ld-2.3.6.so
|
|
295
|
+
fun:_dlerror_run
|
|
296
|
+
fun:dlopen@@GLIBC_2.1
|
|
297
|
+
fun:dln_load
|
|
298
|
+
fun:rb_require_safe
|
|
299
|
+
}
|
|
300
|
+
{
|
|
301
|
+
PThread::rb_require_safe
|
|
302
|
+
Memcheck:Leak
|
|
303
|
+
fun:calloc
|
|
304
|
+
fun:pthread_setspecific
|
|
305
|
+
fun:_dlerror_run
|
|
306
|
+
fun:dlopen@@GLIBC_2.1
|
|
307
|
+
fun:dln_load
|
|
308
|
+
fun:rb_require_safe
|
|
309
|
+
fun:rb_f_require
|
|
310
|
+
fun:call_cfunc
|
|
311
|
+
fun:rb_call0
|
|
312
|
+
fun:rb_call
|
|
313
|
+
fun:rb_eval
|
|
314
|
+
fun:rb_eval
|
|
315
|
+
}
|
|
316
|
+
{
|
|
317
|
+
Ruby::rb_f_require
|
|
318
|
+
Memcheck:Leak
|
|
319
|
+
fun:malloc
|
|
320
|
+
obj:/lib/ld-2.3.6.so
|
|
321
|
+
fun:dl_open_worker
|
|
322
|
+
obj:/lib/ld-2.3.6.so
|
|
323
|
+
fun:_dl_open
|
|
324
|
+
fun:dlopen_doit
|
|
325
|
+
obj:/lib/ld-2.3.6.so
|
|
326
|
+
fun:_dlerror_run
|
|
327
|
+
fun:dlopen@@GLIBC_2.1
|
|
328
|
+
fun:dln_load
|
|
329
|
+
fun:rb_require_safe
|
|
330
|
+
fun:rb_f_require
|
|
331
|
+
}
|
|
332
|
+
{
|
|
333
|
+
GLIBC_2::dl_open_worker
|
|
334
|
+
Memcheck:Leak
|
|
335
|
+
fun:malloc
|
|
336
|
+
fun:realloc
|
|
337
|
+
obj:/lib/ld-2.3.6.so
|
|
338
|
+
obj:/lib/ld-2.3.6.so
|
|
339
|
+
obj:/lib/ld-2.3.6.so
|
|
340
|
+
fun:dl_open_worker
|
|
341
|
+
obj:/lib/ld-2.3.6.so
|
|
342
|
+
fun:_dl_open
|
|
343
|
+
fun:dlopen_doit
|
|
344
|
+
obj:/lib/ld-2.3.6.so
|
|
345
|
+
fun:_dlerror_run
|
|
346
|
+
fun:dlopen@@GLIBC_2.1
|
|
347
|
+
}
|
|
348
|
+
{
|
|
349
|
+
Leak6
|
|
350
|
+
Memcheck:Leak
|
|
351
|
+
fun:calloc
|
|
352
|
+
obj:/lib/ld-2.3.6.so
|
|
353
|
+
fun:dl_open_worker
|
|
354
|
+
obj:/lib/ld-2.3.6.so
|
|
355
|
+
fun:_dl_open
|
|
356
|
+
fun:dlopen_doit
|
|
357
|
+
obj:/lib/ld-2.3.6.so
|
|
358
|
+
fun:_dlerror_run
|
|
359
|
+
fun:dlopen@@GLIBC_2.1
|
|
360
|
+
fun:dln_load
|
|
361
|
+
fun:rb_require_safe
|
|
362
|
+
fun:rb_f_require
|
|
363
|
+
}
|
|
364
|
+
{
|
|
365
|
+
Leak7
|
|
366
|
+
Memcheck:Leak
|
|
367
|
+
fun:calloc
|
|
368
|
+
obj:/lib/ld-2.3.6.so
|
|
369
|
+
obj:/lib/ld-2.3.6.so
|
|
370
|
+
obj:/lib/ld-2.3.6.so
|
|
371
|
+
fun:dl_open_worker
|
|
372
|
+
obj:/lib/ld-2.3.6.so
|
|
373
|
+
fun:_dl_open
|
|
374
|
+
fun:dlopen_doit
|
|
375
|
+
obj:/lib/ld-2.3.6.so
|
|
376
|
+
fun:_dlerror_run
|
|
377
|
+
fun:dlopen@@GLIBC_2.1
|
|
378
|
+
fun:dln_load
|
|
379
|
+
}
|
|
380
|
+
{
|
|
381
|
+
Leak8
|
|
382
|
+
Memcheck:Leak
|
|
383
|
+
fun:calloc
|
|
384
|
+
fun:rehash
|
|
385
|
+
fun:st_insert
|
|
386
|
+
}
|
|
387
|
+
{
|
|
388
|
+
Leak9
|
|
389
|
+
Memcheck:Leak
|
|
390
|
+
fun:malloc
|
|
391
|
+
fun:st_init_table_with_size
|
|
392
|
+
fun:st_init_strtable_with_size
|
|
393
|
+
fun:Init_sym
|
|
394
|
+
fun:rb_call_inits
|
|
395
|
+
fun:ruby_init
|
|
396
|
+
fun:main
|
|
397
|
+
}
|
|
398
|
+
{
|
|
399
|
+
Leak10
|
|
400
|
+
Memcheck:Leak
|
|
401
|
+
fun:realloc
|
|
402
|
+
fun:ruby_xrealloc
|
|
403
|
+
fun:rb_str_buf_cat
|
|
404
|
+
fun:rb_str_cat
|
|
405
|
+
fun:rb_str_cat2
|
|
406
|
+
fun:rb_set_class_path
|
|
407
|
+
fun:rb_define_class_under
|
|
408
|
+
fun:Init_Exception
|
|
409
|
+
fun:rb_call_inits
|
|
410
|
+
fun:ruby_init
|
|
411
|
+
fun:main
|
|
412
|
+
}
|
|
413
|
+
{
|
|
414
|
+
Leak11
|
|
415
|
+
Memcheck:Leak
|
|
416
|
+
fun:malloc
|
|
417
|
+
fun:st_add_direct
|
|
418
|
+
fun:rb_intern
|
|
419
|
+
}
|
|
420
|
+
{
|
|
421
|
+
Leak12
|
|
422
|
+
Memcheck:Leak
|
|
423
|
+
fun:malloc
|
|
424
|
+
fun:st_insert
|
|
425
|
+
}
|
|
426
|
+
{
|
|
427
|
+
Leak13
|
|
428
|
+
Memcheck:Leak
|
|
429
|
+
fun:calloc
|
|
430
|
+
fun:st_init_table_with_size
|
|
431
|
+
fun:st_init_table
|
|
432
|
+
fun:st_init_numtable
|
|
433
|
+
fun:Init_var_tables
|
|
434
|
+
fun:rb_call_inits
|
|
435
|
+
fun:ruby_init
|
|
436
|
+
fun:main
|
|
437
|
+
}
|
|
438
|
+
{
|
|
439
|
+
Leak14
|
|
440
|
+
Memcheck:Leak
|
|
441
|
+
fun:malloc
|
|
442
|
+
fun:ruby_xmalloc
|
|
443
|
+
fun:ruby_strdup
|
|
444
|
+
fun:rb_intern
|
|
445
|
+
}
|
|
446
|
+
{
|
|
447
|
+
Leak15
|
|
448
|
+
Memcheck:Leak
|
|
449
|
+
fun:calloc
|
|
450
|
+
fun:_dlerror_run
|
|
451
|
+
fun:dlopen@@GLIBC_2.1
|
|
452
|
+
fun:dln_load
|
|
453
|
+
fun:rb_require_safe
|
|
454
|
+
fun:rb_f_require
|
|
455
|
+
fun:call_cfunc
|
|
456
|
+
fun:rb_call0
|
|
457
|
+
fun:rb_call
|
|
458
|
+
fun:rb_eval
|
|
459
|
+
fun:rb_load
|
|
460
|
+
fun:rb_require_safe
|
|
461
|
+
}
|
|
462
|
+
{
|
|
463
|
+
Leak16
|
|
464
|
+
Memcheck:Leak
|
|
465
|
+
fun:calloc
|
|
466
|
+
fun:pthread_setspecific
|
|
467
|
+
fun:_dlerror_run
|
|
468
|
+
fun:dlopen@@GLIBC_2.1
|
|
469
|
+
fun:dln_load
|
|
470
|
+
fun:rb_require_safe
|
|
471
|
+
fun:rb_f_require
|
|
472
|
+
fun:call_cfunc
|
|
473
|
+
fun:rb_call0
|
|
474
|
+
fun:rb_call
|
|
475
|
+
fun:rb_eval
|
|
476
|
+
fun:rb_load
|
|
477
|
+
}
|
|
478
|
+
|