random_forester 0.1.0

checksums.yaml

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data/.rspec

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+--format documentation
+--color

data/.travis.yml

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+language: ruby
+rvm:
+  - 2.1.2
+before_install: gem install bundler -v 1.10.5

data/CODE_OF_CONDUCT.md

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+# Contributor Code of Conduct
+
+As contributors and maintainers of this project, we pledge to respect all people who contribute through reporting issues, posting feature requests, updating documentation, submitting pull requests or patches, and other activities.
+
+We are committed to making participation in this project a harassment-free experience for everyone, regardless of level of experience, gender, gender identity and expression, sexual orientation, disability, personal appearance, body size, race, ethnicity, age, or religion.
+
+Examples of unacceptable behavior by participants include the use of sexual language or imagery, derogatory comments or personal attacks, trolling, public or private harassment, insults, or other unprofessional conduct.
+
+Project maintainers have the right and responsibility to remove, edit, or reject comments, commits, code, wiki edits, issues, and other contributions that are not aligned to this Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed from the project team.
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by opening an issue or contacting one or more of the project maintainers.
+
+This Code of Conduct is adapted from the [Contributor Covenant](http://contributor-covenant.org), version 1.0.0, available at [http://contributor-covenant.org/version/1/0/0/](http://contributor-covenant.org/version/1/0/0/)

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in random_forester.gemspec
+gemspec

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2016 asaf schers
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# RandomForester
+
+Welcome to your new gem! In this directory, you'll find the files you need to be able to package up your Ruby library into a gem. Put your Ruby code in the file `lib/random_forester`. To experiment with that code, run `bin/console` for an interactive prompt.
+
+TODO: Delete this and the text above, and describe your gem
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'random_forester'
+```
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install random_forester
+
+## Usage
+
+TODO: Write usage instructions here
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake rspec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
+
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/random_forester. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](contributor-covenant.org) code of conduct.
+
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
+

data/Rakefile

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+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+
+RSpec::Core::RakeTask.new(:spec)
+
+task :default => :spec
+
+task :console do
+  exec "pry -r random_forester -I ./lib"
+end

data/bin/console

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+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "random_forester"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "pry"
+Pry.start

data/bin/setup

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+#!/bin/bash
+set -euo pipefail
+IFS=$'\n\t'
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/lib/categorical_predicate.rb

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+class CategoricalPredicate
+
+  IS_IN = 'isIn'
+
+  attr_reader :field
+
+  def initialize(pred_xml)
+    @field = pred_xml.xpath('@field').to_s.to_sym
+    @array = pred_xml.xpath('Array/text()').to_s.tr('"', '').split('   ')
+    @operator = pred_xml.xpath('@booleanOperator').to_s
+  end
+
+  def true?(features)
+    @array.include? features[@field] if @operator == IS_IN
+  end
+end

data/lib/decision_tree.rb

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+require 'predicate'
+require 'rubytree'
+
+class DecisionTree
+  ROOT = 'root'
+  LEFT = 'left'
+  RIGHT = 'right'
+
+  attr_reader :root
+
+  def initialize(tree_xml)
+    @id = tree_xml.xpath('@id')
+    @root = Tree::TreeNode.new(ROOT)
+    set_node(tree_xml.xpath('TreeModel/Node'), @root)
+  end
+
+  def set_node(tree_xml, root)
+    root.content = Predicate.new(tree_xml)
+
+    return if tree_xml.xpath('*').count == 1
+
+    root << Tree::TreeNode.new(LEFT)
+    root << Tree::TreeNode.new(RIGHT)
+
+    set_node(tree_xml.xpath('*')[1], root[LEFT]) if tree_xml.xpath('*')[1]
+    set_node(tree_xml.xpath('*')[2], root[RIGHT]) if tree_xml.xpath('*')[2]
+  end
+
+  def decide(features)
+    curr = @root
+    while curr.content.decision == ''
+      prev = curr
+      curr = curr[LEFT] if curr[LEFT] && curr[LEFT].content.true?(features)
+      curr = curr[RIGHT] if curr[RIGHT] && curr[RIGHT].content.true?(features)
+
+      return if no_true_child?(curr, prev)
+    end
+
+    curr.content.decision
+  end
+
+  def no_true_child?(curr, prev)
+    return false if (prev.content != curr.content)
+    RandomForester.logger.error "Null tree: #{@id}, bad feature: #{curr[LEFT].content.field }"
+    true
+  end
+
+end

data/lib/missing_categories_script.rb

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+require 'json'
+
+pmml_file = '' #pmml file name
+json = '' #get features json from oscd
+
+get_missing_categories(json,pmml_file)
+
+def get_category_feature_names(pmml_file)
+  xml = RandomForester.get_xml pmml_file;
+  features = {}
+  xml.xpath("PMML/DataDictionary/*").each { |df| features[df.xpath('@name').to_s] = df.xpath('@dataType').to_s }; nil
+  features.select { |_, v| v == 'string' }.keys
+end
+
+def get_categories(json, pmml_file)
+  curr_features = JSON.parse(json)
+  category_features = get_category_feature_names(pmml_file)
+  curr_features.select { |k, v| category_features.include?(k)}
+end
+
+def get_missing_categories(json, pmml_file)
+  categories = get_categories(json, pmml_file)
+  categories.each { |k, v|
+    next if !!v == v
+    category_on_pmml = File.readlines(pmml_file).any?{ |l| l[v.to_s] }
+    puts "category: #{k}, value: #{v}" unless category_on_pmml
+  }; nil
+end
+
+
+
+
+

data/lib/numerical_predicate.rb

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+class NumericalPredicate
+
+  GREATER_THAN = 'greaterThan'
+  LESS_OR_EQUAL = 'lessOrEqual'
+
+  attr_reader :field
+
+  def initialize(pred_xml)
+    @field = pred_xml.xpath('@field').to_s.to_sym
+    @value = Float(pred_xml.xpath('@value').to_s)
+    @operator = pred_xml.xpath('@operator').to_s
+  end
+
+  def true?(features)
+    curr_value = Float(features[@field])
+    return curr_value > @value if @operator == GREATER_THAN
+    curr_value < @value if @operator == LESS_OR_EQUAL
+  end
+end

data/lib/predicate.rb

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+require 'numerical_predicate'
+require 'categorical_predicate'
+
+class Predicate
+
+  attr_reader :decision
+
+  def initialize(pred_xml)
+    @pred_xml =  pred_xml.xpath('*')[0]
+
+    @op = @pred_xml.xpath('@operator').to_s
+    @bool_op = @pred_xml.xpath('@booleanOperator').to_s
+
+    if !@op.empty?
+      @pred = NumericalPredicate.new(@pred_xml)
+    elsif !@bool_op.empty?
+      @pred = CategoricalPredicate.new(@pred_xml)
+    end
+
+    @decision = pred_xml.xpath('@score').to_s
+  end
+
+  def to_s
+    @pred_xml.to_s
+  end
+
+  def field
+    @pred.field
+  end
+
+  def true?(features)
+    return true if @pred.nil?
+    return if missing_feature?(features)
+    return if nil_feature?(features)
+    @pred.true?(features)
+  end
+
+  def missing_feature?(features)
+    return false if features.has_key? field
+    RandomForester.logger.error "Missing feature #{field}"
+    true
+  end
+
+  def nil_feature?(features)
+    return false unless features[field].nil?
+    RandomForester.logger.error "Feature #{field} value is nil"
+    true
+  end
+end

data/lib/random_forest.rb

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+require 'decision_tree'
+
+class RandomForest
+
+  def initialize(xml)
+    xml_trees = xml.xpath('PMML/MiningModel/Segmentation/Segment')
+    @decision_trees = xml_trees.collect{ |xml_tree|
+      DecisionTree.new(xml_tree)
+    }
+  end
+
+  def decisions_count(fearures)
+    decisions = @decision_trees.collect { |decision_tree|
+      decision_tree.decide(fearures)
+    }
+    decisions.inject(Hash.new(0)) { |h, e| h[e] += 1 ; h }
+  end
+
+  def predict(features)
+    decisions_count(features).max_by {|_, v|  v }[0]
+  end
+
+end

data/lib/random_forester/version.rb

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+module RandomForester
+  VERSION = "0.1.0"
+end

data/lib/random_forester.rb

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+require 'random_forester/version'
+require 'nokogiri'
+require 'random_forest'
+require 'logger'
+require 'pry'
+
+RANDOM_FOREST_MODEL = 'randomForest_Model'
+MODEL_NOT_SUPPORTED_ERROR = 'model not supported'
+
+module RandomForester
+
+  class << self
+    attr_writer :logger
+
+    def logger
+      @logger ||= Logger.new($stdout).tap do |log|
+        log.progname = self.name
+      end
+    end
+  end
+
+  def self.get_model(pmml_file_name)
+    xml = get_xml(pmml_file_name)
+    new_model(xml)
+  end
+
+  def self.new_model(xml)
+    case get_model_type(xml)
+      when RANDOM_FOREST_MODEL
+        RandomForest.new(xml)
+      else
+        raise MODEL_NOT_SUPPORTED_ERROR
+      end
+  end
+
+  def self.get_xml(pmml_file_name)
+    pmml_string = File.open(pmml_file_name, 'rb').read
+    xml = Nokogiri::XML(pmml_string)
+    xml.remove_namespaces!
+  end
+
+  def self.get_model_type(xml)
+    xml.xpath("PMML/MiningModel/@modelName").to_s
+  end
+end

data/random_forester.gemspec

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+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'random_forester/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "random_forester"
+  spec.version       = RandomForester::VERSION
+  spec.authors       = ["asaf schers"]
+  spec.email         = ["schers@riskified.com"]
+
+  spec.summary       = %q{Creates a random forest object from a pmml file.}
+  spec.homepage      = 'https://github.com/asafschers/random_forester'
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
+  spec.bindir        = "exe"
+  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.10"
+  spec.add_development_dependency "rake", "~> 10.0"
+  spec.add_development_dependency "rspec"
+  spec.add_development_dependency "pry"
+  spec.add_dependency "nokogiri", "~> 1.6"
+  spec.add_dependency "rubytree"
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: random_forester
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- asaf schers
+autorequire: 
+bindir: exe
+cert_chain: []
+date: 2016-12-10 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: pry
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: nokogiri
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.6'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.6'
+- !ruby/object:Gem::Dependency
+  name: rubytree
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: 
+email:
+- schers@riskified.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".rspec"
+- ".travis.yml"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- lib/categorical_predicate.rb
+- lib/decision_tree.rb
+- lib/missing_categories_script.rb
+- lib/numerical_predicate.rb
+- lib/predicate.rb
+- lib/random_forest.rb
+- lib/random_forester.rb
+- lib/random_forester/version.rb
+- random_forester.gemspec
+homepage: https://github.com/asafschers/random_forester
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.2.2
+signing_key: 
+specification_version: 4
+summary: Creates a random forest object from a pmml file.
+test_files: []
+has_rdoc: