rafflesia 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (3647) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE +21 -0
  3. data/README.md +38 -0
  4. data/lib/rafflesia/annotations/annotation_fetch_data.rb +20 -0
  5. data/lib/rafflesia/annotations/annotation_fetch_request.rb +30 -0
  6. data/lib/rafflesia/annotations/annotation_map_data.rb +27 -0
  7. data/lib/rafflesia/annotations/annotation_map_request.rb +30 -0
  8. data/lib/rafflesia/annotations/annotation_mapping.rb +30 -0
  9. data/lib/rafflesia/annotations/annotation_mapping_import_request.rb +72 -0
  10. data/lib/rafflesia/annotations/annotation_record.rb +33 -0
  11. data/lib/rafflesia/annotations/api_error_body.rb +36 -0
  12. data/lib/rafflesia/annotations/database_snapshot.rb +30 -0
  13. data/lib/rafflesia/annotations/envelope_annotation_fetch_data.rb +36 -0
  14. data/lib/rafflesia/annotations/envelope_annotation_map_data.rb +36 -0
  15. data/lib/rafflesia/annotations/envelope_relation_import_data.rb +36 -0
  16. data/lib/rafflesia/annotations/evidence_summary.rb +36 -0
  17. data/lib/rafflesia/annotations/object_ref.rb +48 -0
  18. data/lib/rafflesia/annotations/provenance.rb +48 -0
  19. data/lib/rafflesia/annotations/relation_import_data.rb +102 -0
  20. data/lib/rafflesia/annotations/search_warning.rb +27 -0
  21. data/lib/rafflesia/annotations/table_column.rb +30 -0
  22. data/lib/rafflesia/annotations/tool_version.rb +27 -0
  23. data/lib/rafflesia/annotations.rb +151 -0
  24. data/lib/rafflesia/api_keys/api_key_create_request.rb +39 -0
  25. data/lib/rafflesia/api_keys/api_key_create_response.rb +33 -0
  26. data/lib/rafflesia/api_keys/api_key_info.rb +57 -0
  27. data/lib/rafflesia/api_keys/api_key_list_data.rb +20 -0
  28. data/lib/rafflesia/api_keys/api_key_revoke_data.rb +20 -0
  29. data/lib/rafflesia/api_keys/envelope_api_key_create_response.rb +36 -0
  30. data/lib/rafflesia/api_keys/envelope_api_key_list_data.rb +36 -0
  31. data/lib/rafflesia/api_keys/envelope_api_key_revoke_data.rb +36 -0
  32. data/lib/rafflesia/api_keys.rb +108 -0
  33. data/lib/rafflesia/artifacts/archive_artifact_import_data.rb +84 -0
  34. data/lib/rafflesia/artifacts/archive_artifact_import_request.rb +42 -0
  35. data/lib/rafflesia/artifacts/archive_artifact_record.rb +57 -0
  36. data/lib/rafflesia/artifacts/archive_association_artifact_ref.rb +33 -0
  37. data/lib/rafflesia/artifacts/archive_association_candidate.rb +39 -0
  38. data/lib/rafflesia/artifacts/archive_inventory_data.rb +81 -0
  39. data/lib/rafflesia/artifacts/archive_inventory_request.rb +57 -0
  40. data/lib/rafflesia/artifacts/archive_member_find_data.rb +63 -0
  41. data/lib/rafflesia/artifacts/archive_member_find_request.rb +72 -0
  42. data/lib/rafflesia/artifacts/archive_member_find_result.rb +63 -0
  43. data/lib/rafflesia/artifacts/archive_member_pairs_export_request.rb +75 -0
  44. data/lib/rafflesia/artifacts/archive_member_record.rb +57 -0
  45. data/lib/rafflesia/artifacts/archive_source_metrics_export_request.rb +60 -0
  46. data/lib/rafflesia/artifacts/artifact_import_result.rb +57 -0
  47. data/lib/rafflesia/artifacts/artifact_manifest.rb +39 -0
  48. data/lib/rafflesia/artifacts/artifact_manifest_import_data.rb +48 -0
  49. data/lib/rafflesia/artifacts/artifact_manifest_import_request.rb +27 -0
  50. data/lib/rafflesia/artifacts/artifact_materialization_result.rb +78 -0
  51. data/lib/rafflesia/artifacts/artifact_materialize_data.rb +69 -0
  52. data/lib/rafflesia/artifacts/artifact_materialize_request.rb +36 -0
  53. data/lib/rafflesia/artifacts/artifact_paper.rb +33 -0
  54. data/lib/rafflesia/artifacts/cryo_em_map_data.rb +45 -0
  55. data/lib/rafflesia/artifacts/envelope_archive_artifact_import_data.rb +36 -0
  56. data/lib/rafflesia/artifacts/envelope_archive_inventory_data.rb +36 -0
  57. data/lib/rafflesia/artifacts/envelope_archive_member_find_data.rb +36 -0
  58. data/lib/rafflesia/artifacts/envelope_artifact_manifest_import_data.rb +36 -0
  59. data/lib/rafflesia/artifacts/envelope_artifact_materialize_data.rb +36 -0
  60. data/lib/rafflesia/artifacts/envelope_table_export_data.rb +36 -0
  61. data/lib/rafflesia/artifacts/map_model_association_data.rb +45 -0
  62. data/lib/rafflesia/artifacts/map_parser_metadata.rb +27 -0
  63. data/lib/rafflesia/artifacts/mrc_header_metadata.rb +87 -0
  64. data/lib/rafflesia/artifacts/paper_artifact.rb +51 -0
  65. data/lib/rafflesia/artifacts/source_metric_links_export_request.rb +63 -0
  66. data/lib/rafflesia/artifacts/structure_data.rb +45 -0
  67. data/lib/rafflesia/artifacts/table_export_data.rb +57 -0
  68. data/lib/rafflesia/artifacts.rb +461 -0
  69. data/lib/rafflesia/audit/audit_log_actor.rb +51 -0
  70. data/lib/rafflesia/audit/audit_log_list_data.rb +24 -0
  71. data/lib/rafflesia/audit/audit_log_record.rb +87 -0
  72. data/lib/rafflesia/audit/envelope_audit_log_list_data.rb +36 -0
  73. data/lib/rafflesia/audit.rb +48 -0
  74. data/lib/rafflesia/auth/auth_envelope_cli_authorize_data.rb +27 -0
  75. data/lib/rafflesia/auth/auth_envelope_cli_token_data.rb +27 -0
  76. data/lib/rafflesia/auth/auth_envelope_csrf_token_data.rb +27 -0
  77. data/lib/rafflesia/auth/auth_envelope_invitation_preview_response.rb +27 -0
  78. data/lib/rafflesia/auth/auth_envelope_list_passkey_summary.rb +27 -0
  79. data/lib/rafflesia/auth/auth_envelope_list_team_invitation_response.rb +27 -0
  80. data/lib/rafflesia/auth/auth_envelope_list_team_member_response.rb +27 -0
  81. data/lib/rafflesia/auth/auth_envelope_magic_auth_start_data.rb +27 -0
  82. data/lib/rafflesia/auth/auth_envelope_member_permissions_response.rb +27 -0
  83. data/lib/rafflesia/auth/auth_envelope_organization_list_response.rb +27 -0
  84. data/lib/rafflesia/auth/auth_envelope_passkey_start_data.rb +27 -0
  85. data/lib/rafflesia/auth/auth_envelope_passkey_success_data.rb +27 -0
  86. data/lib/rafflesia/auth/auth_envelope_password_reset_start_data.rb +27 -0
  87. data/lib/rafflesia/auth/auth_envelope_pending_organization_selection_data.rb +27 -0
  88. data/lib/rafflesia/auth/auth_envelope_session_payload.rb +27 -0
  89. data/lib/rafflesia/auth/auth_envelope_signed_out_data.rb +27 -0
  90. data/lib/rafflesia/auth/auth_envelope_team_access_response.rb +27 -0
  91. data/lib/rafflesia/auth/auth_envelope_team_invitation_response.rb +27 -0
  92. data/lib/rafflesia/auth/auth_envelope_team_member_response.rb +27 -0
  93. data/lib/rafflesia/auth/auth_envelope_team_success_data.rb +7 -0
  94. data/lib/rafflesia/auth/auth_error.rb +27 -0
  95. data/lib/rafflesia/auth/auth_user.rb +36 -0
  96. data/lib/rafflesia/auth/cli_authorize_data.rb +27 -0
  97. data/lib/rafflesia/auth/cli_refresh_request.rb +24 -0
  98. data/lib/rafflesia/auth/cli_token_data.rb +48 -0
  99. data/lib/rafflesia/auth/cli_token_request.rb +27 -0
  100. data/lib/rafflesia/auth/create_organization_request.rb +20 -0
  101. data/lib/rafflesia/auth/credential_request.rb +27 -0
  102. data/lib/rafflesia/auth/csrf_token_data.rb +20 -0
  103. data/lib/rafflesia/auth/invitation_preview_response.rb +30 -0
  104. data/lib/rafflesia/auth/magic_auth_request.rb +24 -0
  105. data/lib/rafflesia/auth/magic_auth_send_request.rb +20 -0
  106. data/lib/rafflesia/auth/magic_auth_start_data.rb +27 -0
  107. data/lib/rafflesia/auth/member_permissions_response.rb +24 -0
  108. data/lib/rafflesia/auth/member_resource_grant.rb +27 -0
  109. data/lib/rafflesia/auth/organization_list_response.rb +24 -0
  110. data/lib/rafflesia/auth/organization_selection_request.rb +24 -0
  111. data/lib/rafflesia/auth/organization_summary.rb +27 -0
  112. data/lib/rafflesia/auth/passkey_start_data.rb +20 -0
  113. data/lib/rafflesia/auth/passkey_success_data.rb +20 -0
  114. data/lib/rafflesia/auth/passkey_summary.rb +30 -0
  115. data/lib/rafflesia/auth/password_reset_confirm_request.rb +24 -0
  116. data/lib/rafflesia/auth/password_reset_request.rb +7 -0
  117. data/lib/rafflesia/auth/password_reset_start_data.rb +24 -0
  118. data/lib/rafflesia/auth/pending_organization.rb +24 -0
  119. data/lib/rafflesia/auth/pending_organization_selection_data.rb +24 -0
  120. data/lib/rafflesia/auth/profile_update_request.rb +24 -0
  121. data/lib/rafflesia/auth/session_payload.rb +36 -0
  122. data/lib/rafflesia/auth/sign_up_request.rb +30 -0
  123. data/lib/rafflesia/auth/signed_out_data.rb +24 -0
  124. data/lib/rafflesia/auth/switch_organization_request.rb +7 -0
  125. data/lib/rafflesia/auth/team_access_response.rb +24 -0
  126. data/lib/rafflesia/auth/team_invitation_request.rb +24 -0
  127. data/lib/rafflesia/auth/team_invitation_response.rb +36 -0
  128. data/lib/rafflesia/auth/team_member_response.rb +48 -0
  129. data/lib/rafflesia/auth/team_role_update_request.rb +20 -0
  130. data/lib/rafflesia/auth/team_success_data.rb +7 -0
  131. data/lib/rafflesia/auth.rb +686 -0
  132. data/lib/rafflesia/base_client.rb +240 -0
  133. data/lib/rafflesia/billing/billing_cancel_pending_switch_request.rb +20 -0
  134. data/lib/rafflesia/billing/billing_checkout_session_request.rb +30 -0
  135. data/lib/rafflesia/billing/billing_hosted_session.rb +24 -0
  136. data/lib/rafflesia/billing/billing_portal_session_request.rb +7 -0
  137. data/lib/rafflesia/billing/billing_set_usage_limit_request.rb +24 -0
  138. data/lib/rafflesia/billing/billing_switch_plan_request.rb +24 -0
  139. data/lib/rafflesia/billing/envelope_billing_hosted_session.rb +36 -0
  140. data/lib/rafflesia/billing/envelope_subscription_summary.rb +36 -0
  141. data/lib/rafflesia/billing/envelope_usage_summary_data.rb +36 -0
  142. data/lib/rafflesia/billing/subscription_summary.rb +108 -0
  143. data/lib/rafflesia/billing/usage_summary.rb +39 -0
  144. data/lib/rafflesia/billing/usage_summary_data.rb +51 -0
  145. data/lib/rafflesia/billing/usage_time_series_point.rb +24 -0
  146. data/lib/rafflesia/billing.rb +204 -0
  147. data/lib/rafflesia/biosearch/biosearch_query_profile_audit_data.rb +39 -0
  148. data/lib/rafflesia/biosearch/biosearch_query_profile_audit_gate.rb +42 -0
  149. data/lib/rafflesia/biosearch/biosearch_query_profile_audit_request.rb +27 -0
  150. data/lib/rafflesia/biosearch/biosearch_query_profile_audit_run_data.rb +72 -0
  151. data/lib/rafflesia/biosearch/biosearch_query_profile_audit_run_request.rb +81 -0
  152. data/lib/rafflesia/biosearch/biosearch_query_profile_audit_section.rb +54 -0
  153. data/lib/rafflesia/biosearch/biosearch_query_profile_comparison.rb +33 -0
  154. data/lib/rafflesia/biosearch/biosearch_query_profile_ingest_data.rb +78 -0
  155. data/lib/rafflesia/biosearch/biosearch_query_profile_ingest_request.rb +36 -0
  156. data/lib/rafflesia/biosearch/biosearch_query_profile_validation.rb +51 -0
  157. data/lib/rafflesia/biosearch/envelope_biosearch_query_profile_audit_data.rb +36 -0
  158. data/lib/rafflesia/biosearch/envelope_biosearch_query_profile_audit_run_data.rb +36 -0
  159. data/lib/rafflesia/biosearch/envelope_biosearch_query_profile_ingest_data.rb +36 -0
  160. data/lib/rafflesia/biosearch.rb +163 -0
  161. data/lib/rafflesia/cache/blast_remote_read_metrics.rb +42 -0
  162. data/lib/rafflesia/cache/cache_admission_data.rb +84 -0
  163. data/lib/rafflesia/cache/cache_admission_request.rb +60 -0
  164. data/lib/rafflesia/cache/cache_benchmark_data.rb +99 -0
  165. data/lib/rafflesia/cache/cache_benchmark_request.rb +78 -0
  166. data/lib/rafflesia/cache/cache_benchmark_step.rb +96 -0
  167. data/lib/rafflesia/cache/cache_benchmark_suite_case_data.rb +33 -0
  168. data/lib/rafflesia/cache/cache_benchmark_suite_data.rb +63 -0
  169. data/lib/rafflesia/cache/cache_benchmark_suite_gate.rb +27 -0
  170. data/lib/rafflesia/cache/cache_benchmark_suite_request.rb +51 -0
  171. data/lib/rafflesia/cache/cache_evicted_file.rb +33 -0
  172. data/lib/rafflesia/cache/cache_eviction_policy.rb +36 -0
  173. data/lib/rafflesia/cache/cache_explain_data.rb +60 -0
  174. data/lib/rafflesia/cache/cache_explain_request.rb +24 -0
  175. data/lib/rafflesia/cache/cache_materialization_explanation.rb +60 -0
  176. data/lib/rafflesia/cache/cache_materialization_metrics.rb +72 -0
  177. data/lib/rafflesia/cache/cache_namespace_usage.rb +42 -0
  178. data/lib/rafflesia/cache/cache_status_data.rb +81 -0
  179. data/lib/rafflesia/cache/cache_status_file.rb +36 -0
  180. data/lib/rafflesia/cache/cache_status_request.rb +45 -0
  181. data/lib/rafflesia/cache/cache_sweep_data.rb +69 -0
  182. data/lib/rafflesia/cache/cache_sweep_request.rb +42 -0
  183. data/lib/rafflesia/cache/cache_warm_data.rb +57 -0
  184. data/lib/rafflesia/cache/cache_warm_request.rb +30 -0
  185. data/lib/rafflesia/cache/cache_warm_workload_request.rb +39 -0
  186. data/lib/rafflesia/cache/cache_warm_workload_result.rb +63 -0
  187. data/lib/rafflesia/cache/envelope_cache_admission_data.rb +36 -0
  188. data/lib/rafflesia/cache/envelope_cache_benchmark_data.rb +36 -0
  189. data/lib/rafflesia/cache/envelope_cache_benchmark_suite_data.rb +36 -0
  190. data/lib/rafflesia/cache/envelope_cache_explain_data.rb +36 -0
  191. data/lib/rafflesia/cache/envelope_cache_status_data.rb +36 -0
  192. data/lib/rafflesia/cache/envelope_cache_sweep_data.rb +36 -0
  193. data/lib/rafflesia/cache/envelope_cache_warm_data.rb +36 -0
  194. data/lib/rafflesia/cache/envelope_serverless_workload_profile_list_data.rb +36 -0
  195. data/lib/rafflesia/cache/msa_artifact_manifest.rb +105 -0
  196. data/lib/rafflesia/cache/msa_column_summary.rb +39 -0
  197. data/lib/rafflesia/cache/msa_inspect_data.rb +57 -0
  198. data/lib/rafflesia/cache/relation_artifact_data.rb +48 -0
  199. data/lib/rafflesia/cache/relation_preview_data.rb +57 -0
  200. data/lib/rafflesia/cache/serverless_workload_profile.rb +81 -0
  201. data/lib/rafflesia/cache/serverless_workload_profile_list_data.rb +24 -0
  202. data/lib/rafflesia/cache/serverless_workload_profile_list_request.rb +20 -0
  203. data/lib/rafflesia/cache.rb +380 -0
  204. data/lib/rafflesia/client.rb +256 -0
  205. data/lib/rafflesia/configuration.rb +24 -0
  206. data/lib/rafflesia/database_join_candidate_matrices/database_join_candidate_matrix_data.rb +63 -0
  207. data/lib/rafflesia/database_join_candidate_matrices/database_join_candidate_matrix_request.rb +30 -0
  208. data/lib/rafflesia/database_join_candidate_matrices/database_join_candidate_matrix_row.rb +57 -0
  209. data/lib/rafflesia/database_join_candidate_matrices/database_join_candidate_measure_request.rb +48 -0
  210. data/lib/rafflesia/database_join_candidate_matrices/envelope_database_join_candidate_matrix_data.rb +36 -0
  211. data/lib/rafflesia/database_join_candidate_matrices/query_budget.rb +27 -0
  212. data/lib/rafflesia/database_join_candidate_matrices.rb +45 -0
  213. data/lib/rafflesia/database_join_candidate_proposals/database_join_candidate_proposal_data.rb +72 -0
  214. data/lib/rafflesia/database_join_candidate_proposals/database_join_candidate_proposal_request.rb +20 -0
  215. data/lib/rafflesia/database_join_candidate_proposals/database_join_candidate_review_template.rb +54 -0
  216. data/lib/rafflesia/database_join_candidate_proposals/envelope_database_join_candidate_proposal_data.rb +36 -0
  217. data/lib/rafflesia/database_join_candidate_proposals/ontology_review_evidence_reference.rb +30 -0
  218. data/lib/rafflesia/database_join_candidate_proposals.rb +36 -0
  219. data/lib/rafflesia/database_join_candidate_reviews/database_join_candidate_review_data.rb +69 -0
  220. data/lib/rafflesia/database_join_candidate_reviews/database_join_candidate_review_list_data.rb +30 -0
  221. data/lib/rafflesia/database_join_candidate_reviews/database_join_candidate_review_request.rb +60 -0
  222. data/lib/rafflesia/database_join_candidate_reviews/envelope_database_join_candidate_review_data.rb +36 -0
  223. data/lib/rafflesia/database_join_candidate_reviews/envelope_database_join_candidate_review_list_data.rb +36 -0
  224. data/lib/rafflesia/database_join_candidate_reviews/ontology_incremental_closure_delta_data.rb +66 -0
  225. data/lib/rafflesia/database_join_candidate_reviews/ontology_join_patch_data.rb +63 -0
  226. data/lib/rafflesia/database_join_candidate_reviews/ontology_join_patch_relationship.rb +42 -0
  227. data/lib/rafflesia/database_join_candidate_reviews/ontology_join_review_impact_data.rb +39 -0
  228. data/lib/rafflesia/database_join_candidate_reviews/ontology_semantic_closure_violation.rb +36 -0
  229. data/lib/rafflesia/database_join_candidate_reviews.rb +117 -0
  230. data/lib/rafflesia/database_join_candidates/database_join_candidate_compatibility.rb +27 -0
  231. data/lib/rafflesia/database_join_candidates/database_join_candidate_data.rb +123 -0
  232. data/lib/rafflesia/database_join_candidates/database_join_candidate_list_data.rb +33 -0
  233. data/lib/rafflesia/database_join_candidates/database_join_candidate_rejection.rb +30 -0
  234. data/lib/rafflesia/database_join_candidates/database_join_candidate_run_data.rb +99 -0
  235. data/lib/rafflesia/database_join_candidates/database_join_key_profile_ref.rb +72 -0
  236. data/lib/rafflesia/database_join_candidates/database_join_side_measurement.rb +63 -0
  237. data/lib/rafflesia/database_join_candidates/envelope_database_join_candidate_data.rb +36 -0
  238. data/lib/rafflesia/database_join_candidates/envelope_database_join_candidate_list_data.rb +36 -0
  239. data/lib/rafflesia/database_join_candidates/envelope_database_join_candidate_run_data.rb +36 -0
  240. data/lib/rafflesia/database_join_candidates.rb +129 -0
  241. data/lib/rafflesia/database_join_certifications/database_join_certification_data.rb +96 -0
  242. data/lib/rafflesia/database_join_certifications/database_join_certification_request.rb +45 -0
  243. data/lib/rafflesia/database_join_certifications/database_join_certification_row.rb +48 -0
  244. data/lib/rafflesia/database_join_certifications/envelope_database_join_certification_data.rb +36 -0
  245. data/lib/rafflesia/database_join_certifications.rb +60 -0
  246. data/lib/rafflesia/database_join_coverage/database_join_coverage_data.rb +66 -0
  247. data/lib/rafflesia/database_join_coverage/database_join_coverage_row.rb +51 -0
  248. data/lib/rafflesia/database_join_coverage/envelope_database_join_coverage_data.rb +36 -0
  249. data/lib/rafflesia/database_join_coverage.rb +45 -0
  250. data/lib/rafflesia/database_join_coverage_ledgers/database_join_coverage_control_request.rb +45 -0
  251. data/lib/rafflesia/database_join_coverage_ledgers/database_join_coverage_ledger_data.rb +132 -0
  252. data/lib/rafflesia/database_join_coverage_ledgers/database_join_coverage_ledger_list_data.rb +30 -0
  253. data/lib/rafflesia/database_join_coverage_ledgers/database_join_coverage_ledger_request.rb +45 -0
  254. data/lib/rafflesia/database_join_coverage_ledgers/database_join_coverage_ledger_row.rb +111 -0
  255. data/lib/rafflesia/database_join_coverage_ledgers/database_join_drift_request.rb +51 -0
  256. data/lib/rafflesia/database_join_coverage_ledgers/database_join_external_review_measurement.rb +33 -0
  257. data/lib/rafflesia/database_join_coverage_ledgers/database_join_path_edge.rb +30 -0
  258. data/lib/rafflesia/database_join_coverage_ledgers/database_join_path_measurement_request.rb +36 -0
  259. data/lib/rafflesia/database_join_coverage_ledgers/database_join_path_source.rb +27 -0
  260. data/lib/rafflesia/database_join_coverage_ledgers/envelope_database_join_coverage_ledger_data.rb +36 -0
  261. data/lib/rafflesia/database_join_coverage_ledgers/envelope_database_join_coverage_ledger_list_data.rb +36 -0
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@@ -0,0 +1,1442 @@
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+ # frozen_string_literal: true
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+
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+ # This file is auto-generated by oagen. Do not edit.
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+
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+ require 'json'
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+
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+ module Rafflesia
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+ class Datasets
9
+ def initialize(client)
10
+ @client = client
11
+ end
12
+
13
+ # POST /v1/datasets/builds/build
14
+ # @param compact [Boolean, nil]
15
+ # @param compact_shard_size [Integer, nil]
16
+ # @param dataset_name [String, nil]
17
+ # @param dataset_version [String, nil]
18
+ # @param dry_run [Boolean, nil]
19
+ # @param from_manifest_path [String, nil] Optional source dataset manifest to reuse matching structures and table artifacts from while materializing requested missing tables into a new manifest.
20
+ # @param input_dir [String]
21
+ # @param input_paths [Array<String>, nil]
22
+ # @param manifest_path [String, nil]
23
+ # @param max_failure_count [Integer, nil]
24
+ # @param output_dir [String, nil]
25
+ # @param pocket_backend [Rafflesia::Types::DatasetBuildRequestPocketBackend, nil]
26
+ # @param pocket_cache_mode [Rafflesia::Types::DatasetBuildRequestPocketCacheMode, nil]
27
+ # @param profile [Boolean, nil]
28
+ # @param recursive [Boolean, nil]
29
+ # @param response_mode [Rafflesia::Types::DatasetBuildRequestResponseMode, nil] Response payload mode; full includes the inline manifest, summary/compact returns counts, object refs, table summaries, and manifest_path without embedding the manifest rows
30
+ # @param resume [Boolean, nil]
31
+ # @param source [String, nil]
32
+ # @param tables [Array<String>, nil]
33
+ # @param target_namespace [String, nil]
34
+ # @param threshold [Float, nil]
35
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
36
+ # @return [Rafflesia::EnvelopeDatasetBuildData]
37
+ def buildsBuild(
38
+ input_dir:,
39
+ compact: nil,
40
+ compact_shard_size: nil,
41
+ dataset_name: nil,
42
+ dataset_version: nil,
43
+ dry_run: nil,
44
+ from_manifest_path: nil,
45
+ input_paths: nil,
46
+ manifest_path: nil,
47
+ max_failure_count: nil,
48
+ output_dir: nil,
49
+ pocket_backend: nil,
50
+ pocket_cache_mode: nil,
51
+ profile: nil,
52
+ recursive: nil,
53
+ response_mode: nil,
54
+ resume: nil,
55
+ source: nil,
56
+ tables: nil,
57
+ target_namespace: nil,
58
+ threshold: nil,
59
+ request_options: {}
60
+ )
61
+ body = {
62
+ 'compact' => compact,
63
+ 'compact_shard_size' => compact_shard_size,
64
+ 'dataset_name' => dataset_name,
65
+ 'dataset_version' => dataset_version,
66
+ 'dry_run' => dry_run,
67
+ 'from_manifest_path' => from_manifest_path,
68
+ 'input_dir' => input_dir,
69
+ 'input_paths' => input_paths,
70
+ 'manifest_path' => manifest_path,
71
+ 'max_failure_count' => max_failure_count,
72
+ 'output_dir' => output_dir,
73
+ 'pocket_backend' => pocket_backend,
74
+ 'pocket_cache_mode' => pocket_cache_mode,
75
+ 'profile' => profile,
76
+ 'recursive' => recursive,
77
+ 'response_mode' => response_mode,
78
+ 'resume' => resume,
79
+ 'source' => source,
80
+ 'tables' => tables,
81
+ 'target_namespace' => target_namespace,
82
+ 'threshold' => threshold
83
+ }.compact
84
+ response = @client.request(
85
+ method: :post,
86
+ path: '/v1/datasets/builds/build',
87
+ auth: true,
88
+ body: body,
89
+ request_options: request_options
90
+ )
91
+ result = Rafflesia::EnvelopeDatasetBuildData.new(response.body)
92
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
93
+ result
94
+ end
95
+
96
+ # POST /v1/datasets/compact
97
+ # @param manifest_path [String]
98
+ # @param output_dir [String, nil]
99
+ # @param output_manifest_path [String, nil]
100
+ # @param replace [Boolean, nil]
101
+ # @param shard_size [Integer, nil]
102
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
103
+ # @return [Rafflesia::EnvelopeDatasetCompactData]
104
+ def compact(
105
+ manifest_path:,
106
+ output_dir: nil,
107
+ output_manifest_path: nil,
108
+ replace: nil,
109
+ shard_size: nil,
110
+ request_options: {}
111
+ )
112
+ body = {
113
+ 'manifest_path' => manifest_path,
114
+ 'output_dir' => output_dir,
115
+ 'output_manifest_path' => output_manifest_path,
116
+ 'replace' => replace,
117
+ 'shard_size' => shard_size
118
+ }.compact
119
+ response = @client.request(
120
+ method: :post,
121
+ path: '/v1/datasets/compact',
122
+ auth: true,
123
+ body: body,
124
+ request_options: request_options
125
+ )
126
+ result = Rafflesia::EnvelopeDatasetCompactData.new(response.body)
127
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
128
+ result
129
+ end
130
+
131
+ # POST /v1/datasets/comparisons/compare
132
+ # @param manifest_path_a [String]
133
+ # @param manifest_path_b [String]
134
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
135
+ # @return [Rafflesia::EnvelopeDatasetCompareData]
136
+ def comparisonsCompare(
137
+ manifest_path_a:,
138
+ manifest_path_b:,
139
+ request_options: {}
140
+ )
141
+ body = {
142
+ 'manifest_path_a' => manifest_path_a,
143
+ 'manifest_path_b' => manifest_path_b
144
+ }
145
+ response = @client.request(
146
+ method: :post,
147
+ path: '/v1/datasets/comparisons/compare',
148
+ auth: true,
149
+ body: body,
150
+ request_options: request_options
151
+ )
152
+ result = Rafflesia::EnvelopeDatasetCompareData.new(response.body)
153
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
154
+ result
155
+ end
156
+
157
+ # GET /v1/datasets/list
158
+ # @param limit [Integer, nil]
159
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
160
+ # @return [Rafflesia::EnvelopeDatasetListData]
161
+ def list(
162
+ limit: nil,
163
+ request_options: {}
164
+ )
165
+ params = {
166
+ 'limit' => limit
167
+ }.compact
168
+ response = @client.request(
169
+ method: :get,
170
+ path: '/v1/datasets/list',
171
+ auth: true,
172
+ params: params,
173
+ request_options: request_options
174
+ )
175
+ result = Rafflesia::EnvelopeDatasetListData.new(response.body)
176
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
177
+ result
178
+ end
179
+
180
+ # POST /v1/datasets/manifests/inspect
181
+ # @param manifest_path [String] Dataset manifest JSON path.
182
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
183
+ # @return [Rafflesia::EnvelopeDatasetManifestInspectData]
184
+ def manifestsInspect(
185
+ manifest_path:,
186
+ request_options: {}
187
+ )
188
+ body = {
189
+ 'manifest_path' => manifest_path
190
+ }
191
+ response = @client.request(
192
+ method: :post,
193
+ path: '/v1/datasets/manifests/inspect',
194
+ auth: true,
195
+ body: body,
196
+ request_options: request_options
197
+ )
198
+ result = Rafflesia::EnvelopeDatasetManifestInspectData.new(response.body)
199
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
200
+ result
201
+ end
202
+
203
+ # POST /v1/datasets/manifests/scan
204
+ # @param dataset_name [String, nil] Only include manifests whose dataset_name equals this value.
205
+ # @param failure_free [Boolean, nil] Only include manifests with zero recorded build failures and at least one non-empty table artifact.
206
+ # @param limit [Integer, nil] Maximum matched manifests to return after sorting.
207
+ # @param require_tables [Array<String>, nil] Only include manifests that contain every one of these table families.
208
+ # @param root [String] Directory scanned recursively for dataset manifest JSON files (typically a lake root).
209
+ # @param sort [Rafflesia::Types::DatasetManifestScanRequestSort, nil] Ordering: modified (freshest file first, default) or version (dataset_version descending).
210
+ # @param version_contains [String, nil] Only include manifests whose dataset_version contains this substring.
211
+ # @param version_prefix [String, nil] Only include manifests whose dataset_version starts with this prefix.
212
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
213
+ # @return [Rafflesia::EnvelopeDatasetManifestScanData]
214
+ def manifestsScan(
215
+ root:,
216
+ dataset_name: nil,
217
+ failure_free: nil,
218
+ limit: nil,
219
+ require_tables: nil,
220
+ sort: nil,
221
+ version_contains: nil,
222
+ version_prefix: nil,
223
+ request_options: {}
224
+ )
225
+ body = {
226
+ 'dataset_name' => dataset_name,
227
+ 'failure_free' => failure_free,
228
+ 'limit' => limit,
229
+ 'require_tables' => require_tables,
230
+ 'root' => root,
231
+ 'sort' => sort,
232
+ 'version_contains' => version_contains,
233
+ 'version_prefix' => version_prefix
234
+ }.compact
235
+ response = @client.request(
236
+ method: :post,
237
+ path: '/v1/datasets/manifests/scan',
238
+ auth: true,
239
+ body: body,
240
+ request_options: request_options
241
+ )
242
+ result = Rafflesia::EnvelopeDatasetManifestScanData.new(response.body)
243
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
244
+ result
245
+ end
246
+
247
+ # Stream one verified immutable relation-release object.
248
+ # @param expected_sha_256 [String]
249
+ # @param expected_size_bytes [Integer]
250
+ # @param kind [String, nil]
251
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
252
+ # @return [Hash{String => Object}]
253
+ def relationReleasesObjectsUpload(
254
+ expected_sha_256:,
255
+ expected_size_bytes:,
256
+ kind: nil,
257
+ request_options: {}
258
+ )
259
+ params = {
260
+ 'expected_sha256' => expected_sha_256,
261
+ 'expected_size_bytes' => expected_size_bytes,
262
+ 'kind' => kind
263
+ }.compact
264
+ response = @client.request(
265
+ method: :put,
266
+ path: '/v1/datasets/relation-releases/objects/upload',
267
+ auth: true,
268
+ params: params,
269
+ request_options: request_options
270
+ )
271
+ JSON.parse(response.body)
272
+ end
273
+
274
+ # POST /v1/datasets/relation-releases/publish
275
+ # @param artifacts [Array<Rafflesia::RelationReleasePublicationArtifact>, nil]
276
+ # @param created_at [String, nil]
277
+ # @param database [String]
278
+ # @param dataset_kind [String, nil]
279
+ # @param dry_run [Boolean, nil] Validate the immutable publication without uploading objects, materializing ClickHouse relations, or publishing the catalog release.
280
+ # @param manifest_object_id [String, nil] Immutable content-addressed release manifest uploaded before the atomic release commit.
281
+ # @param manifest_path [String, nil] Compatibility-only server-local path to the release manifest. Remote publishers should use manifest_object_id.
282
+ # @param manifest_sha_256 [String, nil] Expected SHA-256 digest for manifest_object_id.
283
+ # @param manifest_size_bytes [Integer, nil] Expected byte size for manifest_object_id.
284
+ # @param release [String]
285
+ # @param release_digest [String]
286
+ # @param source [String, nil]
287
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
288
+ # @return [Rafflesia::EnvelopeRelationReleasePublicationData]
289
+ def relationReleasesPublish(
290
+ artifacts:,
291
+ database:,
292
+ release:,
293
+ release_digest:,
294
+ created_at: nil,
295
+ dataset_kind: nil,
296
+ dry_run: nil,
297
+ manifest_object_id: nil,
298
+ manifest_path: nil,
299
+ manifest_sha_256: nil,
300
+ manifest_size_bytes: nil,
301
+ source: nil,
302
+ request_options: {}
303
+ )
304
+ body = {
305
+ 'artifacts' => artifacts,
306
+ 'created_at' => created_at,
307
+ 'database' => database,
308
+ 'dataset_kind' => dataset_kind,
309
+ 'dry_run' => dry_run,
310
+ 'manifest_object_id' => manifest_object_id,
311
+ 'manifest_path' => manifest_path,
312
+ 'manifest_sha256' => manifest_sha_256,
313
+ 'manifest_size_bytes' => manifest_size_bytes,
314
+ 'release' => release,
315
+ 'release_digest' => release_digest,
316
+ 'source' => source
317
+ }.compact
318
+ response = @client.request(
319
+ method: :post,
320
+ path: '/v1/datasets/relation-releases/publish',
321
+ auth: true,
322
+ body: body,
323
+ request_options: request_options
324
+ )
325
+ result = Rafflesia::EnvelopeRelationReleasePublicationData.new(response.body)
326
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
327
+ result
328
+ end
329
+
330
+ # POST /v1/datasets/releases/audit
331
+ # @param audit_object_id [String, nil] Content-addressed audit object id to decode directly.
332
+ # @param corpus [String, nil] Immutable corpus name. Required when ref and audit_object_id are omitted.
333
+ # @param object_store_root [String, nil] Optional local or object-storage root. Defaults to the API server's release data root.
334
+ # @param ref [String, nil] Optional immutable release ref formatted as corpus:release_id. When set, the audit chain for the corpus is searched for this release.
335
+ # @param release_id [String, nil] Immutable release id. Required with corpus when ref and audit_object_id are omitted.
336
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
337
+ # @return [Rafflesia::EnvelopeCorpusReleaseAuditData]
338
+ def releasesAudit(
339
+ audit_object_id: nil,
340
+ corpus: nil,
341
+ object_store_root: nil,
342
+ ref: nil,
343
+ release_id: nil,
344
+ request_options: {}
345
+ )
346
+ body = {
347
+ 'audit_object_id' => audit_object_id,
348
+ 'corpus' => corpus,
349
+ 'object_store_root' => object_store_root,
350
+ 'ref' => ref,
351
+ 'release_id' => release_id
352
+ }.compact
353
+ response = @client.request(
354
+ method: :post,
355
+ path: '/v1/datasets/releases/audit',
356
+ auth: true,
357
+ body: body,
358
+ request_options: request_options
359
+ )
360
+ result = Rafflesia::EnvelopeCorpusReleaseAuditData.new(response.body)
361
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
362
+ result
363
+ end
364
+
365
+ # POST /v1/datasets/releases/backfill
366
+ # @param corpus [String, nil] Optional corpus name. When omitted, all corpora under the release root are scanned.
367
+ # @param dry_run [Boolean, nil] When true, inspect release manifests without writing catalog rows.
368
+ # @param limit [Integer, nil] Maximum release manifests to scan. Defaults to 1000.
369
+ # @param object_store_root [String, nil] Optional local or object-storage release root. Defaults to the API server's release data root.
370
+ # @param publish_aliases [Boolean, nil] When true, sync object-store current pointers into catalog aliases. Defaults to true unless dry_run is set.
371
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
372
+ # @return [Rafflesia::EnvelopeCorpusReleaseBackfillData]
373
+ def releasesBackfill(
374
+ corpus: nil,
375
+ dry_run: nil,
376
+ limit: nil,
377
+ object_store_root: nil,
378
+ publish_aliases: nil,
379
+ request_options: {}
380
+ )
381
+ body = {
382
+ 'corpus' => corpus,
383
+ 'dry_run' => dry_run,
384
+ 'limit' => limit,
385
+ 'object_store_root' => object_store_root,
386
+ 'publish_aliases' => publish_aliases
387
+ }.compact
388
+ response = @client.request(
389
+ method: :post,
390
+ path: '/v1/datasets/releases/backfill',
391
+ auth: true,
392
+ body: body,
393
+ request_options: request_options
394
+ )
395
+ result = Rafflesia::EnvelopeCorpusReleaseBackfillData.new(response.body)
396
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
397
+ result
398
+ end
399
+
400
+ # POST /v1/datasets/releases/benchmark
401
+ # @param calibrated_query_profiles_path [String, nil] Optional output path for calibrated rerun query profiles. Defaults beside query_profiles_path.
402
+ # @param calibrated_sequence_planner_mode [Rafflesia::Types::CorpuReleaseBenchmarkRequestCalibratedSequencePlannerMode, nil] Planner mode for the calibrated rerun. Defaults to v7.
403
+ # @param candidate_rank_strategy [Rafflesia::Types::CorpuReleaseBenchmarkRequestCandidateRankStrategy, nil] Candidate ranking key used before optional verification.
404
+ # @param corpus [String] Benchmark corpus name.
405
+ # @param exact_rerank [Boolean, nil] When true for structure_prefilter benchmarks, exact-rerank benchmark queries with a pairwise structure aligner.
406
+ # @param exact_rerank_backend [Rafflesia::Types::CorpuReleaseBenchmarkRequestExactRerankBackend, nil] Pairwise backend used by exact_rerank benchmark searches. Defaults to tmalign unless a preset fills it.
407
+ # @param exact_rerank_rank_key [Rafflesia::Types::CorpuReleaseBenchmarkRequestExactRerankRankKey, nil] Measurement used to order exact_rerank benchmark hits.
408
+ # @param family [Rafflesia::Types::CorpuReleaseBenchmarkRequestFamily, nil] Search family to build and benchmark. Defaults to sequence_prefilter.
409
+ # @param foldseek_binary_path [String, nil] Optional absolute Foldseek binary path used for 3Di-compatible raw-structure token extraction in structure_prefilter builds.
410
+ # @param input_path [String, nil] Input FASTA path for seed or sequence_prefilter families. For structure_prefilter, this may be a structure-token TSV path, a raw PDB/mmCIF file, or a directory of raw PDB/mmCIF files.
411
+ # @param kmer_size [Integer, nil] k-mer size used by seed and sequence prefilter releases.
412
+ # @param max_bytes_per_query [Float, nil] Optional query-profile audit gate limiting max bytes read per query.
413
+ # @param max_bytes_per_query_increase [Float, nil] Optional previous-run comparison gate limiting max bytes-per-query increase.
414
+ # @param max_candidates [Integer, nil] Optional cap on ranked candidates before max_hits.
415
+ # @param max_candidates_grid [Array<Integer>, nil] Candidate caps to sweep; overrides max_candidates when set.
416
+ # @param max_final_recall_regression [Float, nil] Optional previous-run comparison gate limiting recall regression.
417
+ # @param max_hits [Integer, nil] Maximum hits requested per recall query.
418
+ # @param max_latency_ms [Float, nil] Optional query-profile audit gate limiting max latency per query.
419
+ # @param max_latency_ms_increase [Float, nil] Optional previous-run comparison gate limiting max latency increase.
420
+ # @param max_object_bytes_total [Integer, nil] Optional gate limiting object bytes per benchmark row.
421
+ # @param max_object_reads_increase [Float, nil] Optional previous-run comparison gate limiting max object-read increase.
422
+ # @param max_object_reads_per_query [Float, nil] Optional query-profile audit gate limiting max object reads per query.
423
+ # @param max_object_reads_total [Integer, nil] Optional gate limiting object reads per benchmark row.
424
+ # @param max_postings_per_block [Array<Integer>, nil] Postings block sizes to sweep.
425
+ # @param max_query_posting_blocks [Integer, nil] Optional cap on selected query posting blocks.
426
+ # @param max_query_posting_blocks_grid [Array<Integer>, nil] Posting-block caps to sweep; use 0 for uncapped.
427
+ # @param max_shards [Integer, nil] Optional cap on routed shards per query.
428
+ # @param max_shards_grid [Array<Integer>, nil] Routed shard caps to sweep; use 0 for uncapped.
429
+ # @param max_token_frequency [Array<Integer>, nil] Token-frequency caps to sweep. Use 0 for uncapped.
430
+ # @param max_verifications [Integer, nil] Optional cap on candidates aligned in verification modes.
431
+ # @param max_verifications_grid [Array<Integer>, nil] Verification caps to sweep; overrides max_verifications when set.
432
+ # @param min_candidate_pool_recall [Float, nil] Optional query-profile audit gate requiring minimum candidate-pool recall.
433
+ # @param min_final_recall_at_k [Float, nil] Optional query-profile audit gate requiring minimum final recall@k.
434
+ # @param min_hit_rate_at_k [Float, nil] Optional gate requiring every benchmark row with recall data to meet this hit-rate@k threshold.
435
+ # @param min_mean_recall_at_k [Float, nil] Optional gate requiring every benchmark row with recall data to meet this mean recall@k threshold.
436
+ # @param minimizer_window [Integer, nil] Minimizer window used by the sequence prefilter family.
437
+ # @param object_store_root [String, nil] Optional local object-store root. Defaults to the API server's release data root.
438
+ # @param payload_records_per_block [Array<Integer>, nil] Payload block sizes to sweep.
439
+ # @param planner_delta_artifact_path [String, nil] Optional output path for the planner calibration delta artifact. Defaults beside query_profiles_path.
440
+ # @param postings_range_coalesce_gap_bytes [Integer, nil] Maximum gap in bytes between postings ranges that may be coalesced.
441
+ # @param postings_range_coalesce_gap_bytes_grid [Array<Integer>, nil] Postings range-coalescing gap values to sweep.
442
+ # @param postings_range_coalesce_max_span_bytes [Integer, nil] Maximum fused postings range span in bytes.
443
+ # @param postings_range_coalesce_max_span_bytes_grid [Array<Integer>, nil] Postings range-coalescing max-span values to sweep.
444
+ # @param previous_query_profile_audit_path [String, nil] Optional previous audit.json path for run-to-run planner regression comparison.
445
+ # @param queries_jsonl_path [String, nil] Optional recall query JSONL path. Each line contains query_id, sequence or structure_tokens, and expected_ids.
446
+ # @param query_mode [Rafflesia::Types::CorpuReleaseBenchmarkRequestQueryMode, nil] Query mode used by recall benchmark searches.
447
+ # @param query_profile_audit_engine [Rafflesia::Types::CorpuReleaseBenchmarkRequestQueryProfileAuditEngine, nil] Audit engine for query_profiles_path. Defaults to duckdb.
448
+ # @param query_profile_audit_limit [Integer, nil] Maximum rows per query-profile audit detail section.
449
+ # @param query_profile_audit_output_dir [String, nil] Optional output directory for audit.json and audit.md generated from query_profiles_path.
450
+ # @param query_profile_audit_timeout_ms [Integer, nil] Optional query-profile audit timeout in milliseconds.
451
+ # @param query_profile_audit_write_markdown [Boolean, nil] Whether to write audit.md alongside audit.json.
452
+ # @param query_profile_max_result_set_ids [Integer, nil] Maximum retained IDs per result_sets array during profile validation; 0 uses backend default.
453
+ # @param query_profiles_path [String, nil] Optional output path for Biosearch query-profile JSONL generated by the release benchmark. Sequence benchmarks write sequence_query_profile.v1; structure benchmarks write structure_query_profile.v1. Defaults under the local object-store root.
454
+ # @param release_prefix [String, nil] Prefix used for immutable release ids produced by the sweep.
455
+ # @param rerank_limit [Integer, nil] Maximum structure benchmark candidates to exact-rerank. Defaults to max_hits.
456
+ # @param routing_mode [Rafflesia::Types::CorpuReleaseBenchmarkRequestRoutingMode, nil] Router selection mode for sharded benchmark searches.
457
+ # @param routing_mode_grid [Array<String>, nil] Router modes to sweep.
458
+ # @param routing_shard_count [Array<Integer>, nil] Router shard counts to sweep. Defaults to 1 when omitted.
459
+ # @param routing_shard_layout [Array<String>, nil] Router shard assignment layouts to sweep: record_id_hash, token_minhash, or biological_minhash.
460
+ # @param run_planner_calibration_loop [Boolean, nil] When true for sequence_prefilter benchmarks, run baseline queries, compile a read-yield calibration profile, rerun calibrated queries, and write a planner-delta artifact.
461
+ # @param run_structure_pair_geometry_ab [Boolean, nil] When true for structure_prefilter, run baseline and residue-pair geometry searches over the same compiled release and emit comparison evidence artifacts.
462
+ # @param sequence_planner_calibration_output_path [String, nil] Optional output path for the benchmark-derived planner calibration profile. Defaults beside query_profiles_path.
463
+ # @param sequence_planner_calibration_path [String, nil] Optional input JSON planner calibration profile used by v7/v8 sequence benchmark searches.
464
+ # @param sequence_planner_mode [Rafflesia::Types::CorpuReleaseBenchmarkRequestSequencePlannerMode, nil] Planner mode used by sequence_prefilter benchmark searches.
465
+ # @param similar_kmer_max_variants [Integer, nil] Maximum similar posting grams retained per query gram when similar_kmer_threshold is set.
466
+ # @param similar_kmer_threshold [Integer, nil] Optional 3Di substitution-matrix threshold for expanding query grams to similar posting grams in structure_prefilter benchmarks.
467
+ # @param simulated_read_latency_ms [Integer, nil] Optional fixed read latency injected into object-store reads.
468
+ # @param structure_coordinate_paths [Hash{String => String}, nil] Optional structure_prefilter record id to raw PDB/mmCIF path map. Stored with every generated release so exact rerank can use release coordinates without caller-supplied targets.
469
+ # @param structure_gram_size [Integer, nil] Structure-token gram size used by the structure prefilter family.
470
+ # @param structure_pair_geometry_evidence_jsonl_path [String, nil] Optional output path for per-query baseline-vs-pair-geometry JSONL evidence. Defaults beside query_profiles_path.
471
+ # @param structure_pair_geometry_evidence_tsv_path [String, nil] Optional output path for per-query baseline-vs-pair-geometry TSV evidence. Defaults beside query_profiles_path.
472
+ # @param structure_pair_geometry_max_query_tokens [Integer, nil] Maximum residue-pair query tokens selected by increasing posting frequency. Defaults to max_query_posting_blocks, then 256.
473
+ # @param structure_pair_geometry_min_shared_pairs [Integer, nil] Minimum shared residue-pair tokens required for pair-only candidate promotion. Defaults to 1.
474
+ # @param structure_pair_geometry_shift_bins [Boolean, nil] When true, expand residue-pair query tokens to adjacent sequence-distance bins.
475
+ # @param structure_pair_geometry_summary_path [String, nil] Optional output path for the structure pair-geometry comparison summary JSON. Defaults beside query_profiles_path.
476
+ # @param structure_search_preset [Rafflesia::Types::CorpuReleaseBenchmarkRequestStructureSearchPreset, nil] Optional structure_prefilter search preset that fills unset candidate-generation and verification knobs in benchmark searches.
477
+ # @param structure_token_extractor [Rafflesia::Types::CorpuReleaseBenchmarkRequestStructureTokenExtractor, nil] Structure-token extractor for raw structure_prefilter inputs. auto preserves current behavior: use foldseek when foldseek_binary_path is set, otherwise use the native geometry tokenizer.
478
+ # @param structure_tokens_path [String, nil] Input structure-token TSV path for the structure_prefilter family. Each row is '<id><tab><structure-token-string>'.
479
+ # @param target_shard_score_coverage [Float, nil] Adaptive routing target score coverage.
480
+ # @param target_shard_score_coverage_grid [Array<Float>, nil] Adaptive routing score-coverage targets to sweep; use 0 for unset.
481
+ # @param tmalign_binary_path [String, nil] Optional absolute TM-align binary path used for structure_prefilter exact_rerank benchmark queries.
482
+ # @param ungapped_diagonal_top_n [Integer, nil] Maximum candidate diagonals rescored by ungapped 3Di matrix HSP when candidate_rank_strategy is ungapped_3di_matrix.
483
+ # @param use_structure_pair_geometry [Boolean, nil] When true, benchmark structure_prefilter candidate generation with deterministic residue-pair geometry postings.
484
+ # @param verification_band [Integer, nil] Optional diagonal band for bounded verification alignment.
485
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
486
+ # @return [Rafflesia::EnvelopeCorpusReleaseBenchmarkData]
487
+ def releasesBenchmark(
488
+ corpus:,
489
+ calibrated_query_profiles_path: nil,
490
+ calibrated_sequence_planner_mode: nil,
491
+ candidate_rank_strategy: nil,
492
+ exact_rerank: nil,
493
+ exact_rerank_backend: nil,
494
+ exact_rerank_rank_key: nil,
495
+ family: nil,
496
+ foldseek_binary_path: nil,
497
+ input_path: nil,
498
+ kmer_size: nil,
499
+ max_bytes_per_query: nil,
500
+ max_bytes_per_query_increase: nil,
501
+ max_candidates: nil,
502
+ max_candidates_grid: nil,
503
+ max_final_recall_regression: nil,
504
+ max_hits: nil,
505
+ max_latency_ms: nil,
506
+ max_latency_ms_increase: nil,
507
+ max_object_bytes_total: nil,
508
+ max_object_reads_increase: nil,
509
+ max_object_reads_per_query: nil,
510
+ max_object_reads_total: nil,
511
+ max_postings_per_block: nil,
512
+ max_query_posting_blocks: nil,
513
+ max_query_posting_blocks_grid: nil,
514
+ max_shards: nil,
515
+ max_shards_grid: nil,
516
+ max_token_frequency: nil,
517
+ max_verifications: nil,
518
+ max_verifications_grid: nil,
519
+ min_candidate_pool_recall: nil,
520
+ min_final_recall_at_k: nil,
521
+ min_hit_rate_at_k: nil,
522
+ min_mean_recall_at_k: nil,
523
+ minimizer_window: nil,
524
+ object_store_root: nil,
525
+ payload_records_per_block: nil,
526
+ planner_delta_artifact_path: nil,
527
+ postings_range_coalesce_gap_bytes: nil,
528
+ postings_range_coalesce_gap_bytes_grid: nil,
529
+ postings_range_coalesce_max_span_bytes: nil,
530
+ postings_range_coalesce_max_span_bytes_grid: nil,
531
+ previous_query_profile_audit_path: nil,
532
+ queries_jsonl_path: nil,
533
+ query_mode: nil,
534
+ query_profile_audit_engine: nil,
535
+ query_profile_audit_limit: nil,
536
+ query_profile_audit_output_dir: nil,
537
+ query_profile_audit_timeout_ms: nil,
538
+ query_profile_audit_write_markdown: nil,
539
+ query_profile_max_result_set_ids: nil,
540
+ query_profiles_path: nil,
541
+ release_prefix: nil,
542
+ rerank_limit: nil,
543
+ routing_mode: nil,
544
+ routing_mode_grid: nil,
545
+ routing_shard_count: nil,
546
+ routing_shard_layout: nil,
547
+ run_planner_calibration_loop: nil,
548
+ run_structure_pair_geometry_ab: nil,
549
+ sequence_planner_calibration_output_path: nil,
550
+ sequence_planner_calibration_path: nil,
551
+ sequence_planner_mode: nil,
552
+ similar_kmer_max_variants: nil,
553
+ similar_kmer_threshold: nil,
554
+ simulated_read_latency_ms: nil,
555
+ structure_coordinate_paths: nil,
556
+ structure_gram_size: nil,
557
+ structure_pair_geometry_evidence_jsonl_path: nil,
558
+ structure_pair_geometry_evidence_tsv_path: nil,
559
+ structure_pair_geometry_max_query_tokens: nil,
560
+ structure_pair_geometry_min_shared_pairs: nil,
561
+ structure_pair_geometry_shift_bins: nil,
562
+ structure_pair_geometry_summary_path: nil,
563
+ structure_search_preset: nil,
564
+ structure_token_extractor: nil,
565
+ structure_tokens_path: nil,
566
+ target_shard_score_coverage: nil,
567
+ target_shard_score_coverage_grid: nil,
568
+ tmalign_binary_path: nil,
569
+ ungapped_diagonal_top_n: nil,
570
+ use_structure_pair_geometry: nil,
571
+ verification_band: nil,
572
+ request_options: {}
573
+ )
574
+ body = {
575
+ 'calibrated_query_profiles_path' => calibrated_query_profiles_path,
576
+ 'calibrated_sequence_planner_mode' => calibrated_sequence_planner_mode,
577
+ 'candidate_rank_strategy' => candidate_rank_strategy,
578
+ 'corpus' => corpus,
579
+ 'exact_rerank' => exact_rerank,
580
+ 'exact_rerank_backend' => exact_rerank_backend,
581
+ 'exact_rerank_rank_key' => exact_rerank_rank_key,
582
+ 'family' => family,
583
+ 'foldseek_binary_path' => foldseek_binary_path,
584
+ 'input_path' => input_path,
585
+ 'kmer_size' => kmer_size,
586
+ 'max_bytes_per_query' => max_bytes_per_query,
587
+ 'max_bytes_per_query_increase' => max_bytes_per_query_increase,
588
+ 'max_candidates' => max_candidates,
589
+ 'max_candidates_grid' => max_candidates_grid,
590
+ 'max_final_recall_regression' => max_final_recall_regression,
591
+ 'max_hits' => max_hits,
592
+ 'max_latency_ms' => max_latency_ms,
593
+ 'max_latency_ms_increase' => max_latency_ms_increase,
594
+ 'max_object_bytes_total' => max_object_bytes_total,
595
+ 'max_object_reads_increase' => max_object_reads_increase,
596
+ 'max_object_reads_per_query' => max_object_reads_per_query,
597
+ 'max_object_reads_total' => max_object_reads_total,
598
+ 'max_postings_per_block' => max_postings_per_block,
599
+ 'max_query_posting_blocks' => max_query_posting_blocks,
600
+ 'max_query_posting_blocks_grid' => max_query_posting_blocks_grid,
601
+ 'max_shards' => max_shards,
602
+ 'max_shards_grid' => max_shards_grid,
603
+ 'max_token_frequency' => max_token_frequency,
604
+ 'max_verifications' => max_verifications,
605
+ 'max_verifications_grid' => max_verifications_grid,
606
+ 'min_candidate_pool_recall' => min_candidate_pool_recall,
607
+ 'min_final_recall_at_k' => min_final_recall_at_k,
608
+ 'min_hit_rate_at_k' => min_hit_rate_at_k,
609
+ 'min_mean_recall_at_k' => min_mean_recall_at_k,
610
+ 'minimizer_window' => minimizer_window,
611
+ 'object_store_root' => object_store_root,
612
+ 'payload_records_per_block' => payload_records_per_block,
613
+ 'planner_delta_artifact_path' => planner_delta_artifact_path,
614
+ 'postings_range_coalesce_gap_bytes' => postings_range_coalesce_gap_bytes,
615
+ 'postings_range_coalesce_gap_bytes_grid' => postings_range_coalesce_gap_bytes_grid,
616
+ 'postings_range_coalesce_max_span_bytes' => postings_range_coalesce_max_span_bytes,
617
+ 'postings_range_coalesce_max_span_bytes_grid' => postings_range_coalesce_max_span_bytes_grid,
618
+ 'previous_query_profile_audit_path' => previous_query_profile_audit_path,
619
+ 'queries_jsonl_path' => queries_jsonl_path,
620
+ 'query_mode' => query_mode,
621
+ 'query_profile_audit_engine' => query_profile_audit_engine,
622
+ 'query_profile_audit_limit' => query_profile_audit_limit,
623
+ 'query_profile_audit_output_dir' => query_profile_audit_output_dir,
624
+ 'query_profile_audit_timeout_ms' => query_profile_audit_timeout_ms,
625
+ 'query_profile_audit_write_markdown' => query_profile_audit_write_markdown,
626
+ 'query_profile_max_result_set_ids' => query_profile_max_result_set_ids,
627
+ 'query_profiles_path' => query_profiles_path,
628
+ 'release_prefix' => release_prefix,
629
+ 'rerank_limit' => rerank_limit,
630
+ 'routing_mode' => routing_mode,
631
+ 'routing_mode_grid' => routing_mode_grid,
632
+ 'routing_shard_count' => routing_shard_count,
633
+ 'routing_shard_layout' => routing_shard_layout,
634
+ 'run_planner_calibration_loop' => run_planner_calibration_loop,
635
+ 'run_structure_pair_geometry_ab' => run_structure_pair_geometry_ab,
636
+ 'sequence_planner_calibration_output_path' => sequence_planner_calibration_output_path,
637
+ 'sequence_planner_calibration_path' => sequence_planner_calibration_path,
638
+ 'sequence_planner_mode' => sequence_planner_mode,
639
+ 'similar_kmer_max_variants' => similar_kmer_max_variants,
640
+ 'similar_kmer_threshold' => similar_kmer_threshold,
641
+ 'simulated_read_latency_ms' => simulated_read_latency_ms,
642
+ 'structure_coordinate_paths' => structure_coordinate_paths,
643
+ 'structure_gram_size' => structure_gram_size,
644
+ 'structure_pair_geometry_evidence_jsonl_path' => structure_pair_geometry_evidence_jsonl_path,
645
+ 'structure_pair_geometry_evidence_tsv_path' => structure_pair_geometry_evidence_tsv_path,
646
+ 'structure_pair_geometry_max_query_tokens' => structure_pair_geometry_max_query_tokens,
647
+ 'structure_pair_geometry_min_shared_pairs' => structure_pair_geometry_min_shared_pairs,
648
+ 'structure_pair_geometry_shift_bins' => structure_pair_geometry_shift_bins,
649
+ 'structure_pair_geometry_summary_path' => structure_pair_geometry_summary_path,
650
+ 'structure_search_preset' => structure_search_preset,
651
+ 'structure_token_extractor' => structure_token_extractor,
652
+ 'structure_tokens_path' => structure_tokens_path,
653
+ 'target_shard_score_coverage' => target_shard_score_coverage,
654
+ 'target_shard_score_coverage_grid' => target_shard_score_coverage_grid,
655
+ 'tmalign_binary_path' => tmalign_binary_path,
656
+ 'ungapped_diagonal_top_n' => ungapped_diagonal_top_n,
657
+ 'use_structure_pair_geometry' => use_structure_pair_geometry,
658
+ 'verification_band' => verification_band
659
+ }.compact
660
+ response = @client.request(
661
+ method: :post,
662
+ path: '/v1/datasets/releases/benchmark',
663
+ auth: true,
664
+ body: body,
665
+ request_options: request_options
666
+ )
667
+ result = Rafflesia::EnvelopeCorpusReleaseBenchmarkData.new(response.body)
668
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
669
+ result
670
+ end
671
+
672
+ # POST /v1/datasets/releases/gc-plan
673
+ # @param corpus [String] Corpus whose catalog releases should be considered for GC.
674
+ # @param dry_run [Boolean, nil] Keep true for a planning-only run. This primitive does not delete object bytes.
675
+ # @param limit [Integer, nil] Maximum release catalog rows to inspect. Defaults to 1000.
676
+ # @param plan_id [String, nil] Optional stable GC plan id. Defaults to a deterministic timestamped id.
677
+ # @param retain_last [Integer, nil] Keep at least this many newest releases in addition to current and pinned releases. Defaults to 2.
678
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
679
+ # @return [Rafflesia::EnvelopeCorpusReleaseGcPlanData]
680
+ def releasesGcPlan(
681
+ corpus:,
682
+ dry_run: nil,
683
+ limit: nil,
684
+ plan_id: nil,
685
+ retain_last: nil,
686
+ request_options: {}
687
+ )
688
+ body = {
689
+ 'corpus' => corpus,
690
+ 'dry_run' => dry_run,
691
+ 'limit' => limit,
692
+ 'plan_id' => plan_id,
693
+ 'retain_last' => retain_last
694
+ }.compact
695
+ response = @client.request(
696
+ method: :post,
697
+ path: '/v1/datasets/releases/gc-plan',
698
+ auth: true,
699
+ body: body,
700
+ request_options: request_options
701
+ )
702
+ result = Rafflesia::EnvelopeCorpusReleaseGcPlanData.new(response.body)
703
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
704
+ result
705
+ end
706
+
707
+ # POST /v1/datasets/releases/history
708
+ # @param corpus [String] Immutable corpus name whose current-pointer audit chain should be listed.
709
+ # @param include_audit_payload [Boolean, nil] Include each decoded audit object payload in the response.
710
+ # @param limit [Integer, nil] Maximum publish-audit entries to follow backward from the current pointer. Defaults to 100.
711
+ # @param object_store_root [String, nil] Optional local or object-storage root. Defaults to the API server's release data root.
712
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
713
+ # @return [Rafflesia::EnvelopeCorpusReleaseHistoryData]
714
+ def releasesHistory(
715
+ corpus:,
716
+ include_audit_payload: nil,
717
+ limit: nil,
718
+ object_store_root: nil,
719
+ request_options: {}
720
+ )
721
+ body = {
722
+ 'corpus' => corpus,
723
+ 'include_audit_payload' => include_audit_payload,
724
+ 'limit' => limit,
725
+ 'object_store_root' => object_store_root
726
+ }.compact
727
+ response = @client.request(
728
+ method: :post,
729
+ path: '/v1/datasets/releases/history',
730
+ auth: true,
731
+ body: body,
732
+ request_options: request_options
733
+ )
734
+ result = Rafflesia::EnvelopeCorpusReleaseHistoryData.new(response.body)
735
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
736
+ result
737
+ end
738
+
739
+ # POST /v1/datasets/releases/list
740
+ # @param corpus [String, nil] Optional corpus name. When omitted, all local corpora under the release root are listed.
741
+ # @param limit [Integer, nil] Maximum release records returned after deterministic sorting. Defaults to 100.
742
+ # @param object_store_root [String, nil] Optional local object-store root. Defaults to the API server's release data root.
743
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
744
+ # @return [Rafflesia::EnvelopeCorpusReleaseListData]
745
+ def releasesList(
746
+ corpus: nil,
747
+ limit: nil,
748
+ object_store_root: nil,
749
+ request_options: {}
750
+ )
751
+ body = {
752
+ 'corpus' => corpus,
753
+ 'limit' => limit,
754
+ 'object_store_root' => object_store_root
755
+ }.compact
756
+ response = @client.request(
757
+ method: :post,
758
+ path: '/v1/datasets/releases/list',
759
+ auth: true,
760
+ body: body,
761
+ request_options: request_options
762
+ )
763
+ result = Rafflesia::EnvelopeCorpusReleaseListData.new(response.body)
764
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
765
+ result
766
+ end
767
+
768
+ # POST /v1/datasets/releases/publish-current
769
+ # @param corpus [String, nil] Immutable corpus name. Required when ref is omitted.
770
+ # @param expected_previous_ref [String, nil] Optional compare-and-swap guard requiring the current pointer to match this ref before publishing.
771
+ # @param max_object_bytes [Integer, nil] Optional hard object-byte budget for the smoke search.
772
+ # @param max_object_reads [Integer, nil] Optional hard object-read budget for the smoke search.
773
+ # @param object_store_root [String, nil] Optional local or object-storage root. Defaults to the API server's release data root.
774
+ # @param reason [String, nil] Optional operator reason stored in the current pointer.
775
+ # @param ref [String, nil] Optional immutable release ref formatted as corpus:release_id.
776
+ # @param release_id [String, nil] Immutable release id. Required when ref is omitted.
777
+ # @param require_no_previous [Boolean, nil] Require that no current pointer already exists before publishing.
778
+ # @param require_zero_materialization [Boolean, nil] Require the smoke search to materialize zero database bytes.
779
+ # @param smoke_family [Rafflesia::Types::CorpuReleasePublishCurrentRequestSmokeFamily, nil] Optional family used for smoke search. Defaults to the first release family.
780
+ # @param smoke_max_hits [Integer, nil] Maximum smoke-search hits. Defaults to 1.
781
+ # @param smoke_query [String, nil] Optional sequence or token query used to prove the newly current release can be searched.
782
+ # @param smoke_query_structure_path [String, nil] Optional raw PDB/mmCIF query path used to smoke-test structure_prefilter releases.
783
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
784
+ # @return [Rafflesia::EnvelopeCorpusReleasePublishCurrentData]
785
+ def releasesPublishCurrent(
786
+ corpus: nil,
787
+ expected_previous_ref: nil,
788
+ max_object_bytes: nil,
789
+ max_object_reads: nil,
790
+ object_store_root: nil,
791
+ reason: nil,
792
+ ref: nil,
793
+ release_id: nil,
794
+ require_no_previous: nil,
795
+ require_zero_materialization: nil,
796
+ smoke_family: nil,
797
+ smoke_max_hits: nil,
798
+ smoke_query: nil,
799
+ smoke_query_structure_path: nil,
800
+ request_options: {}
801
+ )
802
+ body = {
803
+ 'corpus' => corpus,
804
+ 'expected_previous_ref' => expected_previous_ref,
805
+ 'max_object_bytes' => max_object_bytes,
806
+ 'max_object_reads' => max_object_reads,
807
+ 'object_store_root' => object_store_root,
808
+ 'reason' => reason,
809
+ 'ref' => ref,
810
+ 'release_id' => release_id,
811
+ 'require_no_previous' => require_no_previous,
812
+ 'require_zero_materialization' => require_zero_materialization,
813
+ 'smoke_family' => smoke_family,
814
+ 'smoke_max_hits' => smoke_max_hits,
815
+ 'smoke_query' => smoke_query,
816
+ 'smoke_query_structure_path' => smoke_query_structure_path
817
+ }.compact
818
+ response = @client.request(
819
+ method: :post,
820
+ path: '/v1/datasets/releases/publish-current',
821
+ auth: true,
822
+ body: body,
823
+ request_options: request_options
824
+ )
825
+ result = Rafflesia::EnvelopeCorpusReleasePublishCurrentData.new(response.body)
826
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
827
+ result
828
+ end
829
+
830
+ # POST /v1/datasets/releases/search
831
+ # @param candidate_rank_strategy [Rafflesia::Types::CorpuReleaseSearchRequestCandidateRankStrategy, nil] Candidate ranking key before optional verification. Defaults to shared_token_count.
832
+ # @param corpus [String, nil] Immutable corpus name. Required when ref is omitted.
833
+ # @param exact_rerank [Boolean, nil] When true for structure_prefilter, rerank returned candidates with a pairwise structure aligner using caller-supplied target_structure_paths, target_structure_objects, or release-stored coordinates.
834
+ # @param exact_rerank_backend [Rafflesia::Types::CorpuReleaseSearchRequestExactRerankBackend, nil] Pairwise backend used by exact_rerank. Defaults to tmalign unless a preset fills it.
835
+ # @param exact_rerank_rank_key [Rafflesia::Types::CorpuReleaseSearchRequestExactRerankRankKey, nil] Measurement used to order exact_rerank hits. Defaults to the backend's measured primary structural score.
836
+ # @param family [String, nil] Search family inside the release. Defaults to seed. Supported values are seed, sequence_prefilter, and structure_prefilter.
837
+ # @param foldseek_binary_path [String, nil] Optional absolute Foldseek binary path used for query structure-token extraction.
838
+ # @param max_candidates [Integer, nil] Optional cap on ranked candidates before max_hits; truncation is reported in warnings.
839
+ # @param max_hits [Integer, nil] Maximum number of hits returned; defaults to 10.
840
+ # @param max_object_bytes [Integer, nil] Optional object-byte budget. The release router uses it for pre-read planning when possible, and the server enforces it against observed bytes.
841
+ # @param max_object_reads [Integer, nil] Optional object-read budget. The release router uses it for pre-read planning when possible, and the server enforces it against observed reads.
842
+ # @param max_query_posting_blocks [Integer, nil] Optional cap on selected query posting blocks; truncation is reported in warnings.
843
+ # @param max_shards [Integer, nil] Optional cap on routed release shards read for sharded corpus releases.
844
+ # @param max_verifications [Integer, nil] Optional cap on candidates aligned in verification modes.
845
+ # @param object_store_root [String, nil] Optional local object-store root. Defaults to the API server's release data root.
846
+ # @param postings_range_coalesce_gap_bytes [Integer, nil] Maximum gap in bytes between postings ranges that may be coalesced.
847
+ # @param postings_range_coalesce_max_span_bytes [Integer, nil] Maximum fused postings range span in bytes.
848
+ # @param query [String, nil] Query sequence, sequence ID, local FASTA path, structure-token string, or local structure-token file depending on family.
849
+ # @param query_mode [Rafflesia::Types::CorpuReleaseSearchRequestQueryMode, nil] Release-contract query mode. Verification modes use in-process alignment kernels for supported families while keeping candidate-generation warnings explicit. Defaults to candidate_only.
850
+ # @param query_sequence [String, nil] Optional one-letter amino-acid sequence aligned to a structure-token query for structure_prefilter verification.
851
+ # @param query_structure_file_name [String, nil] Stable filename used when staging query_structure_object_id for structure-token extraction.
852
+ # @param query_structure_object_id [String, nil] Optional raw PDB/mmCIF query object id for the structure_prefilter family. The server derives structure tokens before querying.
853
+ # @param query_structure_path [String, nil] Optional raw PDB/mmCIF query path for the structure_prefilter family. The server derives structure tokens before querying.
854
+ # @param ref [String, nil] Optional immutable release ref formatted as corpus:release_id, corpus:current, or corpus:latest.
855
+ # @param release_id [String, nil] Immutable release id. Required when ref is omitted.
856
+ # @param require_zero_materialization [Boolean, nil] Require the release-native path to materialize zero database bytes.
857
+ # @param rerank_limit [Integer, nil] Maximum returned candidates to exact-rerank. Defaults to max_hits.
858
+ # @param routing_mode [Rafflesia::Types::CorpuReleaseSearchRequestRoutingMode, nil] Router selection mode for sharded corpus releases. Defaults to auto.
859
+ # @param sequence_planner_calibration_path [String, nil] Optional local JSON planner calibration profile produced by a release benchmark. Used by v7/v8 sequence planners.
860
+ # @param sequence_planner_mode [Rafflesia::Types::CorpuReleaseSearchRequestSequencePlannerMode, nil] Planner mode for sequence_prefilter searches. Defaults to v4 unless a sequence_planner_calibration_path is provided.
861
+ # @param similar_kmer_max_variants [Integer, nil] Maximum similar posting grams retained per query gram when similar_kmer_threshold is set. Defaults to all matching grams.
862
+ # @param similar_kmer_threshold [Integer, nil] Optional 3Di substitution-matrix threshold for expanding query grams to similar posting grams in structure_prefilter.
863
+ # @param structure_pair_geometry_max_query_tokens [Integer, nil] Maximum residue-pair query tokens selected by increasing posting frequency. Defaults to max_query_posting_blocks, then 256.
864
+ # @param structure_pair_geometry_min_shared_pairs [Integer, nil] Minimum shared residue-pair tokens required for pair-only candidate promotion. Defaults to 1.
865
+ # @param structure_pair_geometry_shift_bins [Boolean, nil] When true, expand residue-pair query tokens to adjacent sequence-distance bins to test boundary-shift tolerance.
866
+ # @param structure_reverse_correction [Boolean, nil] When true, subtract a reverse-query 3Di/AA alignment score during native structure verification. This is Foldseek-inspired correction evidence, not exact upstream neural-net calibration.
867
+ # @param structure_search_preset [Rafflesia::Types::CorpuReleaseSearchRequestStructureSearchPreset, nil] Optional structure_prefilter search preset that fills unset candidate-generation and verification knobs from measured 3Di Pareto policies.
868
+ # @param structure_token_extractor [Rafflesia::Types::CorpuReleaseSearchRequestStructureTokenExtractor, nil] Structure-token extractor for raw structure queries. auto preserves current behavior: use foldseek when foldseek_binary_path is set, otherwise use the native geometry tokenizer.
869
+ # @param target_shard_score_coverage [Float, nil] Adaptive router target coverage over query-token shard scores, in (0,1].
870
+ # @param target_structure_objects [Hash{String => Rafflesia::CorpuReleaseStructureInputObject}, nil] Optional hit id to raw PDB/mmCIF object map used by exact_rerank.
871
+ # @param target_structure_paths [Hash{String => String}, nil] Optional hit id to local PDB/mmCIF path map used by exact_rerank.
872
+ # @param tmalign_binary_path [String, nil] Optional absolute TM-align binary path used for exact_rerank.
873
+ # @param ungapped_diagonal_top_n [Integer, nil] Maximum candidate diagonals rescored by ungapped 3Di matrix HSP when candidate_rank_strategy is ungapped_3di_matrix. Defaults to 4.
874
+ # @param use_structure_pair_geometry [Boolean, nil] When true, augment structure_prefilter candidate generation with deterministic residue-pair geometry postings.
875
+ # @param verification_band [Integer, nil] Optional diagonal band for bounded verification alignment.
876
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
877
+ # @return [Rafflesia::EnvelopeCorpusReleaseSearchData]
878
+ def releasesSearch(
879
+ candidate_rank_strategy: nil,
880
+ corpus: nil,
881
+ exact_rerank: nil,
882
+ exact_rerank_backend: nil,
883
+ exact_rerank_rank_key: nil,
884
+ family: nil,
885
+ foldseek_binary_path: nil,
886
+ max_candidates: nil,
887
+ max_hits: nil,
888
+ max_object_bytes: nil,
889
+ max_object_reads: nil,
890
+ max_query_posting_blocks: nil,
891
+ max_shards: nil,
892
+ max_verifications: nil,
893
+ object_store_root: nil,
894
+ postings_range_coalesce_gap_bytes: nil,
895
+ postings_range_coalesce_max_span_bytes: nil,
896
+ query: nil,
897
+ query_mode: nil,
898
+ query_sequence: nil,
899
+ query_structure_file_name: nil,
900
+ query_structure_object_id: nil,
901
+ query_structure_path: nil,
902
+ ref: nil,
903
+ release_id: nil,
904
+ require_zero_materialization: nil,
905
+ rerank_limit: nil,
906
+ routing_mode: nil,
907
+ sequence_planner_calibration_path: nil,
908
+ sequence_planner_mode: nil,
909
+ similar_kmer_max_variants: nil,
910
+ similar_kmer_threshold: nil,
911
+ structure_pair_geometry_max_query_tokens: nil,
912
+ structure_pair_geometry_min_shared_pairs: nil,
913
+ structure_pair_geometry_shift_bins: nil,
914
+ structure_reverse_correction: nil,
915
+ structure_search_preset: nil,
916
+ structure_token_extractor: nil,
917
+ target_shard_score_coverage: nil,
918
+ target_structure_objects: nil,
919
+ target_structure_paths: nil,
920
+ tmalign_binary_path: nil,
921
+ ungapped_diagonal_top_n: nil,
922
+ use_structure_pair_geometry: nil,
923
+ verification_band: nil,
924
+ request_options: {}
925
+ )
926
+ body = {
927
+ 'candidate_rank_strategy' => candidate_rank_strategy,
928
+ 'corpus' => corpus,
929
+ 'exact_rerank' => exact_rerank,
930
+ 'exact_rerank_backend' => exact_rerank_backend,
931
+ 'exact_rerank_rank_key' => exact_rerank_rank_key,
932
+ 'family' => family,
933
+ 'foldseek_binary_path' => foldseek_binary_path,
934
+ 'max_candidates' => max_candidates,
935
+ 'max_hits' => max_hits,
936
+ 'max_object_bytes' => max_object_bytes,
937
+ 'max_object_reads' => max_object_reads,
938
+ 'max_query_posting_blocks' => max_query_posting_blocks,
939
+ 'max_shards' => max_shards,
940
+ 'max_verifications' => max_verifications,
941
+ 'object_store_root' => object_store_root,
942
+ 'postings_range_coalesce_gap_bytes' => postings_range_coalesce_gap_bytes,
943
+ 'postings_range_coalesce_max_span_bytes' => postings_range_coalesce_max_span_bytes,
944
+ 'query' => query,
945
+ 'query_mode' => query_mode,
946
+ 'query_sequence' => query_sequence,
947
+ 'query_structure_file_name' => query_structure_file_name,
948
+ 'query_structure_object_id' => query_structure_object_id,
949
+ 'query_structure_path' => query_structure_path,
950
+ 'ref' => ref,
951
+ 'release_id' => release_id,
952
+ 'require_zero_materialization' => require_zero_materialization,
953
+ 'rerank_limit' => rerank_limit,
954
+ 'routing_mode' => routing_mode,
955
+ 'sequence_planner_calibration_path' => sequence_planner_calibration_path,
956
+ 'sequence_planner_mode' => sequence_planner_mode,
957
+ 'similar_kmer_max_variants' => similar_kmer_max_variants,
958
+ 'similar_kmer_threshold' => similar_kmer_threshold,
959
+ 'structure_pair_geometry_max_query_tokens' => structure_pair_geometry_max_query_tokens,
960
+ 'structure_pair_geometry_min_shared_pairs' => structure_pair_geometry_min_shared_pairs,
961
+ 'structure_pair_geometry_shift_bins' => structure_pair_geometry_shift_bins,
962
+ 'structure_reverse_correction' => structure_reverse_correction,
963
+ 'structure_search_preset' => structure_search_preset,
964
+ 'structure_token_extractor' => structure_token_extractor,
965
+ 'target_shard_score_coverage' => target_shard_score_coverage,
966
+ 'target_structure_objects' => target_structure_objects,
967
+ 'target_structure_paths' => target_structure_paths,
968
+ 'tmalign_binary_path' => tmalign_binary_path,
969
+ 'ungapped_diagonal_top_n' => ungapped_diagonal_top_n,
970
+ 'use_structure_pair_geometry' => use_structure_pair_geometry,
971
+ 'verification_band' => verification_band
972
+ }.compact
973
+ response = @client.request(
974
+ method: :post,
975
+ path: '/v1/datasets/releases/search',
976
+ auth: true,
977
+ body: body,
978
+ request_options: request_options
979
+ )
980
+ result = Rafflesia::EnvelopeCorpusReleaseSearchData.new(response.body)
981
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
982
+ result
983
+ end
984
+
985
+ # POST /v1/datasets/releases/show
986
+ # @param corpus [String, nil] Immutable corpus name. Required when ref is omitted.
987
+ # @param include_evidence_channels [Boolean, nil] Include typed evidence-channel contracts derived from the release manifest.
988
+ # @param include_manifest [Boolean, nil] Include the parsed release manifest in the response.
989
+ # @param include_runtime_contract [Boolean, nil] Include release evidence-channel and cost-contract observations derived from the release manifest.
990
+ # @param object_store_root [String, nil] Optional local object-store root. Defaults to the API server's release data root.
991
+ # @param ref [String, nil] Optional immutable release ref formatted as corpus:release_id, corpus:current, or corpus:latest.
992
+ # @param release_id [String, nil] Immutable release id. Required when ref is omitted.
993
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
994
+ # @return [Rafflesia::EnvelopeCorpusReleaseShowData]
995
+ def releasesShow(
996
+ corpus: nil,
997
+ include_evidence_channels: nil,
998
+ include_manifest: nil,
999
+ include_runtime_contract: nil,
1000
+ object_store_root: nil,
1001
+ ref: nil,
1002
+ release_id: nil,
1003
+ request_options: {}
1004
+ )
1005
+ body = {
1006
+ 'corpus' => corpus,
1007
+ 'include_evidence_channels' => include_evidence_channels,
1008
+ 'include_manifest' => include_manifest,
1009
+ 'include_runtime_contract' => include_runtime_contract,
1010
+ 'object_store_root' => object_store_root,
1011
+ 'ref' => ref,
1012
+ 'release_id' => release_id
1013
+ }.compact
1014
+ response = @client.request(
1015
+ method: :post,
1016
+ path: '/v1/datasets/releases/show',
1017
+ auth: true,
1018
+ body: body,
1019
+ request_options: request_options
1020
+ )
1021
+ result = Rafflesia::EnvelopeCorpusReleaseShowData.new(response.body)
1022
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1023
+ result
1024
+ end
1025
+
1026
+ # POST /v1/datasets/releases/validate
1027
+ # @param corpus [String, nil] Immutable corpus name. Required when ref is omitted.
1028
+ # @param max_object_bytes [Integer, nil] Optional hard object-byte budget for the smoke search.
1029
+ # @param max_object_reads [Integer, nil] Optional hard object-read budget for the smoke search.
1030
+ # @param object_store_root [String, nil] Optional local or object-storage root. Defaults to the API server's release data root.
1031
+ # @param ref [String, nil] Optional immutable release ref formatted as corpus:release_id, including corpus:current.
1032
+ # @param release_id [String, nil] Immutable release id. Required when ref is omitted.
1033
+ # @param require_zero_materialization [Boolean, nil] Require the smoke search to materialize zero database bytes.
1034
+ # @param smoke_family [Rafflesia::Types::CorpuReleaseValidateRequestSmokeFamily, nil] Optional family used for smoke search. Defaults to the first release family.
1035
+ # @param smoke_max_hits [Integer, nil] Maximum smoke-search hits. Defaults to 1.
1036
+ # @param smoke_query [String, nil] Optional sequence or token query used to prove the release can be searched.
1037
+ # @param smoke_query_structure_path [String, nil] Optional raw PDB/mmCIF query path used to smoke-test structure_prefilter releases.
1038
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1039
+ # @return [Rafflesia::EnvelopeCorpusReleaseValidateData]
1040
+ def releasesValidate(
1041
+ corpus: nil,
1042
+ max_object_bytes: nil,
1043
+ max_object_reads: nil,
1044
+ object_store_root: nil,
1045
+ ref: nil,
1046
+ release_id: nil,
1047
+ require_zero_materialization: nil,
1048
+ smoke_family: nil,
1049
+ smoke_max_hits: nil,
1050
+ smoke_query: nil,
1051
+ smoke_query_structure_path: nil,
1052
+ request_options: {}
1053
+ )
1054
+ body = {
1055
+ 'corpus' => corpus,
1056
+ 'max_object_bytes' => max_object_bytes,
1057
+ 'max_object_reads' => max_object_reads,
1058
+ 'object_store_root' => object_store_root,
1059
+ 'ref' => ref,
1060
+ 'release_id' => release_id,
1061
+ 'require_zero_materialization' => require_zero_materialization,
1062
+ 'smoke_family' => smoke_family,
1063
+ 'smoke_max_hits' => smoke_max_hits,
1064
+ 'smoke_query' => smoke_query,
1065
+ 'smoke_query_structure_path' => smoke_query_structure_path
1066
+ }.compact
1067
+ response = @client.request(
1068
+ method: :post,
1069
+ path: '/v1/datasets/releases/validate',
1070
+ auth: true,
1071
+ body: body,
1072
+ request_options: request_options
1073
+ )
1074
+ result = Rafflesia::EnvelopeCorpusReleaseValidateData.new(response.body)
1075
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1076
+ result
1077
+ end
1078
+
1079
+ # GET /v1/datasets/show
1080
+ # @param name [String]
1081
+ # @param version [String, nil]
1082
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1083
+ # @return [Rafflesia::EnvelopeDatasetShowData]
1084
+ def show(
1085
+ name:,
1086
+ version: nil,
1087
+ request_options: {}
1088
+ )
1089
+ params = {
1090
+ 'name' => name,
1091
+ 'version' => version
1092
+ }.compact
1093
+ response = @client.request(
1094
+ method: :get,
1095
+ path: '/v1/datasets/show',
1096
+ auth: true,
1097
+ params: params,
1098
+ request_options: request_options
1099
+ )
1100
+ result = Rafflesia::EnvelopeDatasetShowData.new(response.body)
1101
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1102
+ result
1103
+ end
1104
+
1105
+ # POST /v1/datasets/source-snapshots/fetch
1106
+ # @param artifact_kind [String] Artifact kind allowed by the selected source profile.
1107
+ # @param expected_etag [String, nil] Expected strong HTTP entity tag from a prior preflight when the upstream publishes no checksum. Sent as If-Match; Rafflesia still computes SHA-256 as the content identity.
1108
+ # @param expected_md_5 [String, nil] Expected upstream MD5 digest when that is the only checksum published by the source. Rafflesia always computes and records SHA-256 as the content identity.
1109
+ # @param expected_sha_256 [String, nil] Expected SHA-256 digest, with or without the sha256: prefix. At least one expected checksum is required.
1110
+ # @param expected_size_bytes [Integer, nil] Optional exact byte length checked before storing the artifact.
1111
+ # @param max_bytes [Integer] Required explicit download ceiling. The fetch stops before exceeding it.
1112
+ # @param source [String] Source profile name returned by datasets source-snapshots profiles.
1113
+ # @param url [String] Exact HTTPS artifact URL on an allowlisted official host and path.
1114
+ # @param version [String] Pinned upstream release label recorded in provenance.
1115
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1116
+ # @return [Rafflesia::EnvelopeDatasetSourceSnapshotFetchData]
1117
+ def sourceSnapshotsFetch(
1118
+ artifact_kind:,
1119
+ max_bytes:,
1120
+ source:,
1121
+ url:,
1122
+ version:,
1123
+ expected_etag: nil,
1124
+ expected_md_5: nil,
1125
+ expected_sha_256: nil,
1126
+ expected_size_bytes: nil,
1127
+ request_options: {}
1128
+ )
1129
+ body = {
1130
+ 'artifact_kind' => artifact_kind,
1131
+ 'expected_etag' => expected_etag,
1132
+ 'expected_md5' => expected_md_5,
1133
+ 'expected_sha256' => expected_sha_256,
1134
+ 'expected_size_bytes' => expected_size_bytes,
1135
+ 'max_bytes' => max_bytes,
1136
+ 'source' => source,
1137
+ 'url' => url,
1138
+ 'version' => version
1139
+ }.compact
1140
+ response = @client.request(
1141
+ method: :post,
1142
+ path: '/v1/datasets/source-snapshots/fetch',
1143
+ auth: true,
1144
+ body: body,
1145
+ request_options: request_options
1146
+ )
1147
+ result = Rafflesia::EnvelopeDatasetSourceSnapshotFetchData.new(response.body)
1148
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1149
+ result
1150
+ end
1151
+
1152
+ # POST /v1/datasets/source-snapshots/import
1153
+ # @param batch_rows [Integer, nil] Rows per durable Parquet checkpoint part in streaming mode. Defaults to 50000.
1154
+ # @param checkpoint_path [String, nil] Explicit streaming checkpoint JSON path. Defaults below output_dir and is never server-side query state.
1155
+ # @param database [String, nil] Logical database name carried into the emitted records relation. Defaults to source.
1156
+ # @param format [String, nil] Input format. Defaults to fasta.
1157
+ # @param import_mode [Rafflesia::Types::DatasetSourceSnapshotImportRequestImportMode, nil] catalog preserves the small-catalog entry manifest; streaming reads bounded batches and is required for full UniProt releases. Defaults to catalog for compatibility.
1158
+ # @param input_object_id [String, nil] Object id containing FASTA bytes to import instead of input_path.
1159
+ # @param input_path [String, nil] Local FASTA path to import as the source snapshot.
1160
+ # @param output_dir [String, nil] Directory for local relation artifacts. Defaults under the server data root.
1161
+ # @param parser [Rafflesia::Types::DatasetSourceSnapshotImportRequestParser, nil] Header parser used for alias extraction. Defaults from source.
1162
+ # @param release [String, nil] Immutable release carried into the emitted records relation. Defaults to version.
1163
+ # @param resume [Boolean, nil] Resume a streaming import from its explicit checkpoint after verifying the immutable input hash and parameters.
1164
+ # @param source [String] Source database name, for example uniprot.
1165
+ # @param version [String] Immutable source database version or release label.
1166
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1167
+ # @return [Rafflesia::EnvelopeDatasetSourceSnapshotImportData]
1168
+ def sourceSnapshotsImport(
1169
+ source:,
1170
+ version:,
1171
+ batch_rows: nil,
1172
+ checkpoint_path: nil,
1173
+ database: nil,
1174
+ format: nil,
1175
+ import_mode: nil,
1176
+ input_object_id: nil,
1177
+ input_path: nil,
1178
+ output_dir: nil,
1179
+ parser: nil,
1180
+ release: nil,
1181
+ resume: nil,
1182
+ request_options: {}
1183
+ )
1184
+ body = {
1185
+ 'batch_rows' => batch_rows,
1186
+ 'checkpoint_path' => checkpoint_path,
1187
+ 'database' => database,
1188
+ 'format' => format,
1189
+ 'import_mode' => import_mode,
1190
+ 'input_object_id' => input_object_id,
1191
+ 'input_path' => input_path,
1192
+ 'output_dir' => output_dir,
1193
+ 'parser' => parser,
1194
+ 'release' => release,
1195
+ 'resume' => resume,
1196
+ 'source' => source,
1197
+ 'version' => version
1198
+ }.compact
1199
+ response = @client.request(
1200
+ method: :post,
1201
+ path: '/v1/datasets/source-snapshots/import',
1202
+ auth: true,
1203
+ body: body,
1204
+ request_options: request_options
1205
+ )
1206
+ result = Rafflesia::EnvelopeDatasetSourceSnapshotImportData.new(response.body)
1207
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1208
+ result
1209
+ end
1210
+
1211
+ # POST /v1/datasets/source-snapshots/ingest
1212
+ # @param allow_duplicate [Boolean, nil] Insert rows even when this ingestion id already succeeded.
1213
+ # @param dry_run [Boolean, nil] Return the deterministic ClickHouse ingest plan without mutating ClickHouse.
1214
+ # @param ingest_mode [Rafflesia::Types::DatasetSourceSnapshotIngestRequestIngestMode, nil]
1215
+ # @param manifest_object_id [String, nil] Object id containing a source snapshot manifest.
1216
+ # @param ref [String, nil] Immutable source snapshot ref formatted source:version.
1217
+ # @param source [String, nil] Source database name. Required when ref and manifest_object_id are omitted.
1218
+ # @param version [String, nil] Source database version. Required when ref and manifest_object_id are omitted.
1219
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1220
+ # @return [Rafflesia::EnvelopeDatasetSourceSnapshotIngestData]
1221
+ def sourceSnapshotsIngest(
1222
+ allow_duplicate: nil,
1223
+ dry_run: nil,
1224
+ ingest_mode: nil,
1225
+ manifest_object_id: nil,
1226
+ ref: nil,
1227
+ source: nil,
1228
+ version: nil,
1229
+ request_options: {}
1230
+ )
1231
+ body = {
1232
+ 'allow_duplicate' => allow_duplicate,
1233
+ 'dry_run' => dry_run,
1234
+ 'ingest_mode' => ingest_mode,
1235
+ 'manifest_object_id' => manifest_object_id,
1236
+ 'ref' => ref,
1237
+ 'source' => source,
1238
+ 'version' => version
1239
+ }.compact
1240
+ response = @client.request(
1241
+ method: :post,
1242
+ path: '/v1/datasets/source-snapshots/ingest',
1243
+ auth: true,
1244
+ body: body,
1245
+ request_options: request_options
1246
+ )
1247
+ result = Rafflesia::EnvelopeDatasetSourceSnapshotIngestData.new(response.body)
1248
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1249
+ result
1250
+ end
1251
+
1252
+ # POST /v1/datasets/source-snapshots/preflight
1253
+ # @param additional_working_bytes [Integer, nil] Caller-supplied extra local working-space requirement for later import or normalization.
1254
+ # @param artifact_kind [String] Artifact kind allowed by the selected source profile.
1255
+ # @param minimum_free_bytes [Integer, nil] Local free-space reserve that must remain after acquisition. Defaults to 10 GiB.
1256
+ # @param source [String] Source profile name returned by datasets source-snapshots profiles.
1257
+ # @param url [String] Exact HTTPS artifact URL on an allowlisted official host and path.
1258
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1259
+ # @return [Rafflesia::EnvelopeDatasetSourceSnapshotPreflightData]
1260
+ def sourceSnapshotsPreflight(
1261
+ artifact_kind:,
1262
+ source:,
1263
+ url:,
1264
+ additional_working_bytes: nil,
1265
+ minimum_free_bytes: nil,
1266
+ request_options: {}
1267
+ )
1268
+ body = {
1269
+ 'additional_working_bytes' => additional_working_bytes,
1270
+ 'artifact_kind' => artifact_kind,
1271
+ 'minimum_free_bytes' => minimum_free_bytes,
1272
+ 'source' => source,
1273
+ 'url' => url
1274
+ }.compact
1275
+ response = @client.request(
1276
+ method: :post,
1277
+ path: '/v1/datasets/source-snapshots/preflight',
1278
+ auth: true,
1279
+ body: body,
1280
+ request_options: request_options
1281
+ )
1282
+ result = Rafflesia::EnvelopeDatasetSourceSnapshotPreflightData.new(response.body)
1283
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1284
+ result
1285
+ end
1286
+
1287
+ # GET /v1/datasets/source-snapshots/profiles
1288
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1289
+ # @return [Rafflesia::EnvelopeDatasetSourceSnapshotProfileListData]
1290
+ def sourceSnapshotsProfiles(request_options: {})
1291
+ response = @client.request(
1292
+ method: :get,
1293
+ path: '/v1/datasets/source-snapshots/profiles',
1294
+ auth: true,
1295
+ request_options: request_options
1296
+ )
1297
+ result = Rafflesia::EnvelopeDatasetSourceSnapshotProfileListData.new(response.body)
1298
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1299
+ result
1300
+ end
1301
+
1302
+ # POST /v1/datasets/source-snapshots/show
1303
+ # @param include_manifest [Boolean, nil] Include the parsed source snapshot manifest in the response.
1304
+ # @param manifest_object_id [String, nil] Object id containing a source snapshot manifest.
1305
+ # @param ref [String, nil] Immutable source snapshot ref formatted source:version.
1306
+ # @param source [String, nil] Source database name. Required when ref and manifest_object_id are omitted.
1307
+ # @param version [String, nil] Source database version. Required when ref and manifest_object_id are omitted.
1308
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1309
+ # @return [Rafflesia::EnvelopeDatasetSourceSnapshotShowData]
1310
+ def sourceSnapshotsShow(
1311
+ include_manifest: nil,
1312
+ manifest_object_id: nil,
1313
+ ref: nil,
1314
+ source: nil,
1315
+ version: nil,
1316
+ request_options: {}
1317
+ )
1318
+ body = {
1319
+ 'include_manifest' => include_manifest,
1320
+ 'manifest_object_id' => manifest_object_id,
1321
+ 'ref' => ref,
1322
+ 'source' => source,
1323
+ 'version' => version
1324
+ }.compact
1325
+ response = @client.request(
1326
+ method: :post,
1327
+ path: '/v1/datasets/source-snapshots/show',
1328
+ auth: true,
1329
+ body: body,
1330
+ request_options: request_options
1331
+ )
1332
+ result = Rafflesia::EnvelopeDatasetSourceSnapshotShowData.new(response.body)
1333
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1334
+ result
1335
+ end
1336
+
1337
+ # POST /v1/datasets/source-snapshots/status
1338
+ # @param manifest_object_id [String, nil] Object id containing a source snapshot manifest.
1339
+ # @param ref [String, nil] Immutable source snapshot ref formatted source:version.
1340
+ # @param source [String, nil] Source database name. Required when ref and manifest_object_id are omitted.
1341
+ # @param version [String, nil] Source database version. Required when ref and manifest_object_id are omitted.
1342
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1343
+ # @return [Rafflesia::EnvelopeDatasetSourceSnapshotStatusData]
1344
+ def sourceSnapshotsStatus(
1345
+ manifest_object_id: nil,
1346
+ ref: nil,
1347
+ source: nil,
1348
+ version: nil,
1349
+ request_options: {}
1350
+ )
1351
+ body = {
1352
+ 'manifest_object_id' => manifest_object_id,
1353
+ 'ref' => ref,
1354
+ 'source' => source,
1355
+ 'version' => version
1356
+ }.compact
1357
+ response = @client.request(
1358
+ method: :post,
1359
+ path: '/v1/datasets/source-snapshots/status',
1360
+ auth: true,
1361
+ body: body,
1362
+ request_options: request_options
1363
+ )
1364
+ result = Rafflesia::EnvelopeDatasetSourceSnapshotStatusData.new(response.body)
1365
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1366
+ result
1367
+ end
1368
+
1369
+ # POST /v1/datasets/source-snapshots/validate
1370
+ # @param manifest_object_id [String, nil] Object id containing a source snapshot manifest.
1371
+ # @param ref [String, nil] Immutable source snapshot ref formatted source:version.
1372
+ # @param require_catalog [Boolean, nil] Require the sequence catalog manifest object to be reachable.
1373
+ # @param require_relation [Boolean, nil] Require the published source_sequence_records relation to be reachable and row-count consistent.
1374
+ # @param source [String, nil] Source database name. Required when ref and manifest_object_id are omitted.
1375
+ # @param version [String, nil] Source database version. Required when ref and manifest_object_id are omitted.
1376
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1377
+ # @return [Rafflesia::EnvelopeDatasetSourceSnapshotValidateData]
1378
+ def sourceSnapshotsValidate(
1379
+ manifest_object_id: nil,
1380
+ ref: nil,
1381
+ require_catalog: nil,
1382
+ require_relation: nil,
1383
+ source: nil,
1384
+ version: nil,
1385
+ request_options: {}
1386
+ )
1387
+ body = {
1388
+ 'manifest_object_id' => manifest_object_id,
1389
+ 'ref' => ref,
1390
+ 'require_catalog' => require_catalog,
1391
+ 'require_relation' => require_relation,
1392
+ 'source' => source,
1393
+ 'version' => version
1394
+ }.compact
1395
+ response = @client.request(
1396
+ method: :post,
1397
+ path: '/v1/datasets/source-snapshots/validate',
1398
+ auth: true,
1399
+ body: body,
1400
+ request_options: request_options
1401
+ )
1402
+ result = Rafflesia::EnvelopeDatasetSourceSnapshotValidateData.new(response.body)
1403
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1404
+ result
1405
+ end
1406
+
1407
+ # POST /v1/datasets/validation/validate
1408
+ # @param manifest_path [String]
1409
+ # @param require_no_failures [Boolean, nil]
1410
+ # @param require_source_files [Boolean, nil]
1411
+ # @param skip_row_count_check [Boolean, nil]
1412
+ # @param tables [Array<String>, nil]
1413
+ # @param request_options [Hash] (see Rafflesia::Types::RequestOptions)
1414
+ # @return [Rafflesia::EnvelopeDatasetValidateData]
1415
+ def validationValidate(
1416
+ manifest_path:,
1417
+ require_no_failures: nil,
1418
+ require_source_files: nil,
1419
+ skip_row_count_check: nil,
1420
+ tables: nil,
1421
+ request_options: {}
1422
+ )
1423
+ body = {
1424
+ 'manifest_path' => manifest_path,
1425
+ 'require_no_failures' => require_no_failures,
1426
+ 'require_source_files' => require_source_files,
1427
+ 'skip_row_count_check' => skip_row_count_check,
1428
+ 'tables' => tables
1429
+ }.compact
1430
+ response = @client.request(
1431
+ method: :post,
1432
+ path: '/v1/datasets/validation/validate',
1433
+ auth: true,
1434
+ body: body,
1435
+ request_options: request_options
1436
+ )
1437
+ result = Rafflesia::EnvelopeDatasetValidateData.new(response.body)
1438
+ result.last_response = Rafflesia::Types::ApiResponse.new(http_status: response.code.to_i, http_headers: response.each_header.to_h, request_id: response["x-request-id"])
1439
+ result
1440
+ end
1441
+ end
1442
+ end