r_bridge 0.5.5 → 0.5.7
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- checksums.yaml +4 -4
- data/ext/r_bridge/extconf.rb +69 -35
- data/ext/r_bridge/r_embed.c +5 -1
- data/lib/r_bridge/version.rb +1 -1
- data/lib/r_bridge.rb +16 -0
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
|
3
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-
metadata.gz:
|
4
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-
data.tar.gz:
|
3
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+
metadata.gz: b76b4186826b369cf4f5e9a21a95ed3871c3c6d74b34fcbc37673883f0e1189e
|
4
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+
data.tar.gz: 9884fa18ee497a0227fab9495812f94c0d41531e8fe41c1dc010f241292d43f6
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5
5
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SHA512:
|
6
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-
metadata.gz:
|
7
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-
data.tar.gz:
|
6
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+
metadata.gz: 7ab6f04a2cc60023c4e4f8908f65555414f2a3c005ff66ce1590a13c47b7cfdabfe4d4c6ce12a6ff377f0d82ded141140851bfc12538d9276261bc4844f1d4ad
|
7
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+
data.tar.gz: eba83451c5af9453a05fce9897b798e17a625c971e3586de39a7e5bba09d9743d38cdddab042df698e76eef5a035e567659d29c44b8a2606149c8c68a2c70963
|
data/ext/r_bridge/extconf.rb
CHANGED
@@ -6,53 +6,69 @@ if FFI::Platform::OS == "windows"
|
|
6
6
|
$CFLAGS << " " << "-D_WIN" << " "
|
7
7
|
end
|
8
8
|
|
9
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-
|
10
|
-
class RHeaderNotFound < RuntimeError
|
11
|
-
end
|
12
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-
class RLibraryNotFound < RuntimeError
|
9
|
+
class RHeaderLibraryNotFound < RuntimeError
|
13
10
|
end
|
14
11
|
|
15
|
-
def
|
12
|
+
def check_set_system_R_header_and_lib( )
|
16
13
|
msg_devel_header = "For UNIX package users, please install R development tools via package (which name should look like r-base-dev or R-devel)."
|
17
14
|
msg_devel_lib = "For UNIX package users, please install R development tools via package (which name should look like r-base-dev or R-devel). If this is a custom build of R, please make sure that It was built with the --enable-R-shlib option. "
|
18
15
|
|
19
16
|
if have_header('R.h')
|
20
|
-
p "header ok"
|
17
|
+
p "header ok (system)"
|
21
18
|
if have_library('R', 'R_tryEval') || have_library('libR', 'R_tryEval')
|
22
|
-
p "library ok"
|
19
|
+
p "library ok (system)"
|
23
20
|
return true
|
24
21
|
else
|
25
|
-
|
22
|
+
p "Dynamic (i.e. shared) library of R is not found (R.dll for Windows, libR.so for UNIX)." + msg_devel_lib
|
26
23
|
end
|
27
24
|
else
|
28
|
-
|
25
|
+
p "Header for R is not found." + msg_devel_header
|
29
26
|
end
|
27
|
+
return false
|
30
28
|
end
|
31
29
|
|
32
|
-
|
33
|
-
|
34
|
-
|
35
|
-
dir_config("R")
|
30
|
+
def check_set_pkg_config_R_header_and_lib( )
|
31
|
+
msg_pkg_config = "To let pkg-config locate libR.pc file, include its existing directory path in R PKG_CONFIG_PATH"
|
36
32
|
|
37
|
-
|
38
|
-
if check_R_header_and_lib()
|
39
|
-
# Makefile that will build and install extension to lib/r_bridge/librbridge.so
|
40
|
-
create_makefile "r_bridge/librbridge"
|
41
|
-
end
|
42
|
-
rescue RHeaderNotFound, RLibraryNotFound => e
|
43
|
-
if find_executable('pkg-config') && (pkg_config_tried == false)
|
33
|
+
if find_executable('pkg-config')
|
44
34
|
add_cflags = pkg_config("libR", "cflags")
|
45
35
|
add_ldflags = pkg_config("libR", "libs")
|
46
|
-
if ( ! add_cflags.nil? )
|
36
|
+
if ( ! add_cflags.nil? )
|
37
|
+
p "header ok (pkg-config)"
|
47
38
|
$CFLAGS << " " << add_cflags
|
48
|
-
|
39
|
+
if (! add_ldflags.nil?)
|
40
|
+
p "library ok (pkg-config)"
|
41
|
+
$LDFLAGS <<" " << add_ldflags
|
42
|
+
return true
|
43
|
+
else
|
44
|
+
p "Dynamic (i.e. shared) library of R is not found (R.dll for Windows, libR.so for UNIX)." + msg_pkg_config
|
45
|
+
end
|
46
|
+
else
|
47
|
+
p "Header for R is not found." + msg_pkg_config
|
48
|
+
end
|
49
|
+
else
|
50
|
+
p "pkg-config command is not available."
|
51
|
+
end
|
52
|
+
return false
|
53
|
+
end
|
54
|
+
|
55
|
+
def check_Rscript_executable
|
56
|
+
if find_executable('Rscript')
|
57
|
+
return true
|
58
|
+
else
|
59
|
+
p "R program is not found. Please check your PATH setting if you already have R on your machine."
|
60
|
+
end
|
61
|
+
return false
|
62
|
+
end
|
63
|
+
|
64
|
+
def check_set_R_home_header_and_lib
|
65
|
+
msg_rscript = "Cannot be detected by R home."
|
66
|
+
|
67
|
+
if check_Rscript_executable
|
68
|
+
r_home_path = `Rscript -e "cat(R.home()[1])"`.chomp
|
69
|
+
else
|
70
|
+
return false
|
49
71
|
end
|
50
|
-
pkg_config_tried = true
|
51
|
-
retry
|
52
|
-
elsif ! find_executable('R')
|
53
|
-
raise "R program is not found. Please check your PATH setting if you already have R on your machine."
|
54
|
-
elsif find_executable('R') && find_executable('Rscript') && (r_config_tried == false)
|
55
|
-
r_home_path = `Rscript -e "cat(R.home()[1])"`.chomp
|
56
72
|
|
57
73
|
if ! r_home_path.empty?()
|
58
74
|
case FFI::Platform::ARCH
|
@@ -65,14 +81,32 @@ rescue RHeaderNotFound, RLibraryNotFound => e
|
|
65
81
|
else
|
66
82
|
raise FFI::Platform::ARCH + ": unkown architecure detected. Please specify R shared library by yourself."
|
67
83
|
end
|
68
|
-
|
69
|
-
|
84
|
+
|
85
|
+
if find_header('R.h', *possible_r_header_dirs)
|
86
|
+
p "header ok (Rscript)"
|
87
|
+
if find_library('R', 'R_tryEval', *possible_r_lib_dirs)
|
88
|
+
p "library ok (Rscript)"
|
89
|
+
return true
|
90
|
+
else
|
91
|
+
p "Dynamic (i.e. shared) library of R is not found (R.dll for Windows, libR.so for UNIX)." + msg_rscript
|
92
|
+
end
|
93
|
+
else
|
94
|
+
p "Header for R is not found." + msg_rscript
|
95
|
+
end
|
96
|
+
else
|
97
|
+
p "R home cannot be detected."
|
70
98
|
end
|
99
|
+
return false
|
100
|
+
end
|
71
101
|
|
72
|
-
|
73
|
-
|
74
|
-
|
75
|
-
|
76
|
-
|
102
|
+
dir_config("R")
|
103
|
+
|
104
|
+
if check_set_system_R_header_and_lib()
|
105
|
+
elsif check_set_pkg_config_R_header_and_lib()
|
106
|
+
elsif check_set_R_home_header_and_lib()
|
107
|
+
else
|
108
|
+
raise RHeaderLibraryNotFound.new( "R header or library not fouund.")
|
77
109
|
end
|
78
110
|
|
111
|
+
create_makefile "r_bridge/librbridge"
|
112
|
+
|
data/ext/r_bridge/r_embed.c
CHANGED
@@ -6,9 +6,11 @@
|
|
6
6
|
|
7
7
|
#include <stdint.h>
|
8
8
|
#define CSTACK_DEFNS
|
9
|
-
#include <Rinterface.h>
|
10
9
|
|
11
10
|
#include "win_compat.h"
|
11
|
+
#ifndef _WIN
|
12
|
+
#include <Rinterface.h>
|
13
|
+
#endif
|
12
14
|
|
13
15
|
#ifdef __FreeBSD__
|
14
16
|
#include <ieeefp.h>
|
@@ -39,7 +41,9 @@ r_embedded_init( bool unlimited_stack_size )
|
|
39
41
|
setup_Rmainloop();
|
40
42
|
}else{
|
41
43
|
Rf_initialize_R( localArgc , args );
|
44
|
+
#ifndef _WIN
|
42
45
|
R_CStackLimit = (uintptr_t) -1 ; // Set -1 for unlimited C stack size.
|
46
|
+
#endif
|
43
47
|
setup_Rmainloop();
|
44
48
|
}
|
45
49
|
}
|
data/lib/r_bridge/version.rb
CHANGED
data/lib/r_bridge.rb
CHANGED
@@ -6,5 +6,21 @@ require 'r_bridge/r_bridge_lazyfunc_ext'
|
|
6
6
|
module RBridge
|
7
7
|
class Error < StandardError; end
|
8
8
|
# Your code goes here...
|
9
|
+
|
10
|
+
if ENV["R_HOME"].nil?
|
11
|
+
puts "Environment variable R_HOME is not set."
|
12
|
+
puts "This time, it is tried to be set by 'R RHOME' command."
|
13
|
+
begin
|
14
|
+
`R --version`
|
15
|
+
rescue => e
|
16
|
+
puts "R command is not available. Please ensure that your PATH environment variable includes the location of R command."
|
17
|
+
raise e
|
18
|
+
end
|
19
|
+
|
20
|
+
r_home_output = `R RHOME`
|
21
|
+
r_home = r_home_output.chomp
|
22
|
+
ENV["R_HOME"] = r_home
|
23
|
+
puts "R_HOME environment variable is set to be #{r_home}."
|
24
|
+
end
|
9
25
|
end
|
10
26
|
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: r_bridge
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.5.
|
4
|
+
version: 0.5.7
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Toshihiro Umehara
|
8
8
|
autorequire:
|
9
9
|
bindir: exe
|
10
10
|
cert_chain: []
|
11
|
-
date:
|
11
|
+
date: 2023-05-06 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: ffi
|
@@ -88,7 +88,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
88
88
|
- !ruby/object:Gem::Version
|
89
89
|
version: '0'
|
90
90
|
requirements: []
|
91
|
-
rubygems_version: 3.
|
91
|
+
rubygems_version: 3.4.6
|
92
92
|
signing_key:
|
93
93
|
specification_version: 4
|
94
94
|
summary: Enables Ruby to construct and evaluate R internal objects
|