quality-measure-engine 1.1.0 → 1.1.1

data/Gemfile

@@ -7,7 +7,7 @@ gem 'bson_ext', '1.5.1',  :platforms => :mri
 gem 'rake'
 #gem 'pry', :require => true
 #gem 'health-data-standards', :git => 'https://github.com/projectcypress/health-data-standards.git', :branch => 'master'
-gem 'health-data-standards', '0.7.0'
+gem 'health-data-standards', '0.7.1'
 
 group :test do
   gem 'cover_me', '>= 1.0.0.rc5', :platforms => :ruby_19

data/js/map_reduce_utils.js

@@ -116,7 +116,35 @@ function() {
     values = normalize(values);
     return _.select(values, function(value) { return value<=max && value>=min; });
   }
-    
+  
+  // calculates the earliest birthdate for a maximum age given a target date.
+  // calculation is inclusive of the full year for the target age
+  // returns: (earliest birthdate that will reach by not exceed the age by the target date)
+  // age: integer in years
+  // effective_date: end of the measurement period, in seconds
+  root.earliestBirthdayForThisAge = function(age, effective_date) {
+    return calculateDateForAge(age, effective_date, true);
+  }
+  // calculates the latest birthdate for a minimum age given a target date 
+  // returns: (latest birthdate that will reach the age by the target date)
+  // age: integer in years
+  // effective_date: end of the measurement period, in seconds
+  root.latestBirthdayForThisAge = function(age, effective_date) {
+    return calculateDateForAge(age, effective_date, false);
+  }
+  // returns birth date for an age value given a specific date
+  // age: integer in years
+  // effective_date: end of the measurement period, in seconds
+  // is_inclusive: boolean for including or excluding age
+  root.calculateDateForAge = function(age, effective_date, is_inclusive) {
+    var earliest_birthdate = new Date(effective_date*1000);
+    var difference = age;
+    if (is_inclusive) difference += 1;
+    earliest_birthdate.setFullYear(earliest_birthdate.getFullYear()-difference);
+    return earliest_birthdate.getTime()/1000;
+  }
+  
+  
   root.map = function(record, population, denominator, numerator, exclusion) {
     var value = {population: false, denominator: false, numerator: false, 
                  exclusions: false, antinumerator: false, patient_id: record._id,

data/lib/quality-measure-engine.rb

@@ -22,7 +22,6 @@ require_relative 'qme/ext/record'
 
 require_relative 'qme/importer/property_matcher'
 require_relative 'qme/importer/generic_importer'
-require_relative 'qme/importer/provider_importer'
 require_relative 'qme/importer/measure_properties_generator'
 
 require 'json'

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: quality-measure-engine
 version: !ruby/object:Gem::Version
-  version: 1.1.0
+  version: 1.1.1
   prerelease: 
 platform: ruby
 authors:
@@ -11,12 +11,12 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-01-31 00:00:00.000000000 -05:00
+date: 2012-02-17 00:00:00.000000000 -05:00
 default_executable: 
 dependencies:
 - !ruby/object:Gem::Dependency
   name: mongo
-  requirement: &2151835920 !ruby/object:Gem::Requirement
+  requirement: &2157284660 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -24,10 +24,10 @@ dependencies:
         version: '1.3'
   type: :runtime
   prerelease: false
-  version_requirements: *2151835920
+  version_requirements: *2157284660
 - !ruby/object:Gem::Dependency
   name: rubyzip
-  requirement: &2151831040 !ruby/object:Gem::Requirement
+  requirement: &2157272260 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -35,10 +35,10 @@ dependencies:
         version: 0.9.4
   type: :runtime
   prerelease: false
-  version_requirements: *2151831040
+  version_requirements: *2157272260
 - !ruby/object:Gem::Dependency
   name: nokogiri
-  requirement: &2151826060 !ruby/object:Gem::Requirement
+  requirement: &2157271520 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -46,10 +46,10 @@ dependencies:
         version: 1.4.4
   type: :runtime
   prerelease: false
-  version_requirements: *2151826060
+  version_requirements: *2157271520
 - !ruby/object:Gem::Dependency
   name: resque
-  requirement: &2151821480 !ruby/object:Gem::Requirement
+  requirement: &2157270840 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -57,10 +57,10 @@ dependencies:
         version: 1.15.0
   type: :runtime
   prerelease: false
-  version_requirements: *2151821480
+  version_requirements: *2157270840
 - !ruby/object:Gem::Dependency
   name: resque-status
-  requirement: &2151818440 !ruby/object:Gem::Requirement
+  requirement: &2157270100 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -68,10 +68,10 @@ dependencies:
         version: 0.2.3
   type: :runtime
   prerelease: false
-  version_requirements: *2151818440
+  version_requirements: *2157270100
 - !ruby/object:Gem::Dependency
   name: jsonschema
-  requirement: &2151815160 !ruby/object:Gem::Requirement
+  requirement: &2157269380 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -79,10 +79,10 @@ dependencies:
         version: 2.0.0
   type: :development
   prerelease: false
-  version_requirements: *2151815160
+  version_requirements: *2157269380
 - !ruby/object:Gem::Dependency
   name: rspec
-  requirement: &2151812380 !ruby/object:Gem::Requirement
+  requirement: &2157268580 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -90,10 +90,10 @@ dependencies:
         version: 2.5.0
   type: :development
   prerelease: false
-  version_requirements: *2151812380
+  version_requirements: *2157268580
 - !ruby/object:Gem::Dependency
   name: awesome_print
-  requirement: &2151808480 !ruby/object:Gem::Requirement
+  requirement: &2157268080 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -101,10 +101,10 @@ dependencies:
         version: '0.3'
   type: :development
   prerelease: false
-  version_requirements: *2151808480
+  version_requirements: *2157268080
 - !ruby/object:Gem::Dependency
   name: roo
-  requirement: &2151800000 !ruby/object:Gem::Requirement
+  requirement: &2157267620 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -112,10 +112,10 @@ dependencies:
         version: 1.9.3
   type: :development
   prerelease: false
-  version_requirements: *2151800000
+  version_requirements: *2157267620
 - !ruby/object:Gem::Dependency
   name: builder
-  requirement: &2151803680 !ruby/object:Gem::Requirement
+  requirement: &2157267100 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -123,10 +123,10 @@ dependencies:
         version: 3.0.0
   type: :development
   prerelease: false
-  version_requirements: *2151803680
+  version_requirements: *2157267100
 - !ruby/object:Gem::Dependency
   name: spreadsheet
-  requirement: &2151912800 !ruby/object:Gem::Requirement
+  requirement: &2157266420 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -134,10 +134,10 @@ dependencies:
         version: 0.6.5.2
   type: :development
   prerelease: false
-  version_requirements: *2151912800
+  version_requirements: *2157266420
 - !ruby/object:Gem::Dependency
   name: google-spreadsheet-ruby
-  requirement: &2152185860 !ruby/object:Gem::Requirement
+  requirement: &2157265900 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -145,7 +145,7 @@ dependencies:
         version: 0.1.2
   type: :development
   prerelease: false
-  version_requirements: *2152185860
+  version_requirements: *2157265900
 description: A library for extracting quality measure information from HITSP C32's
   and ASTM CCR's
 email: talk@projectpophealth.org
@@ -159,7 +159,6 @@ files:
 - lib/qme/importer/generic_importer.rb
 - lib/qme/importer/measure_properties_generator.rb
 - lib/qme/importer/property_matcher.rb
-- lib/qme/importer/provider_importer.rb
 - lib/qme/map/map_reduce_builder.rb
 - lib/qme/map/map_reduce_executor.rb
 - lib/qme/map/measure_calculation_job.rb

data/lib/qme/importer/provider_importer.rb

@@ -1,97 +0,0 @@
-require "date"
-require "date/delta"
-
-module QME
-  module Importer
-    class ProviderImporter
-      include Singleton
-      
-      # Extract Healthcare Providers from C32
-      #
-      # @param [Nokogiri::XML::Document] doc It is expected that the root node of this document
-      #        will have the "cda" namespace registered to "urn:hl7-org:v3"
-      # @return [Array] an array of providers found in the document
-      def extract_providers(doc, use_encounters=false)
-        
-
-        xpath_base = use_encounters ? "//cda:encounter/cda:performer" : "//cda:documentationOf/cda:serviceEvent/cda:performer"
-  
-        performers = doc.xpath(xpath_base)
-
-        providers = performers.map do |performer|
-          provider = {}
-          entity = performer.xpath(performer, "./cda:assignedEntity")
-          name = entity.xpath("./cda:assignedPerson/cda:name")
-          provider[:title]        = extract_data(name, "./cda:prefix")
-          provider[:given_name]   = extract_data(name, "./cda:given[1]")
-          provider[:family_name]  = extract_data(name, "./cda:family")
-          provider[:phone]        = extract_data(entity, "./cda:telecom/@value") { |text| text.gsub("tel:", "") }
-          provider[:organization] = extract_data(entity, "./cda:representedOrganization/cda:name")
-          provider[:specialty]    = extract_data(entity, "./cda:code/@code")
-          time                    = performer.xpath(performer, "./cda:time")
-          provider[:start]        = extract_date(time, "./cda:low/@value")
-          provider[:end]          = extract_date(time, "./cda:high/@value")
-          # NIST sample C32s use different OID for NPI vs C83, support both
-          npi                     = extract_data(entity, "./cda:id[@root='2.16.840.1.113883.4.6' or @root='2.16.840.1.113883.3.72.5.2']/@extension")
-          if ProviderImporter::valid_npi?(npi)
-            provider[:npi]        = npi
-          else
-            puts "Warning: Invalid NPI (#{npi})"
-          end
-          provider
-        end
-      end
-      
-      private
-      
-      def extract_date(subject,query)
-        date = extract_data(subject,query)
-        date ? Date.parse(date).to_time.to_i : nil
-      end
-      
-      # Returns nil if result is an empty string, block allows text munging of result if there is one
-      def extract_data(subject, query)
-        result = subject.xpath(query).text
-        if result == ""
-          nil
-        elsif block_given?
-          yield(result)
-        else
-          result
-        end
-      end
-      
-      # validate the NPI, should be 10 or 15 digits total with the final digit being a
-      # checksum using the Luhn algorithm with additional special handling as described in
-      # https://www.cms.gov/NationalProvIdentStand/Downloads/NPIcheckdigit.pdf 
-      def self.valid_npi?(npi)
-        return false if npi.length != 10 and npi.length != 15
-        return false if npi.gsub(/\d/, '').length > 0 # npi must be all digits
-        return false if npi.length == 15 and (npi =~ /^80840/)==nil # 15 digit npi must start with 80840
-        
-        # checksum is always calculated as if 80840 prefix is present
-        if npi.length==10
-          npi = '80840'+npi
-        end
-        
-        return luhn_checksum(npi[0,14])==npi[14]
-      end
-      
-      def self.luhn_checksum(num)
-        double = {'0' => 0, '1' => 2, '2' => 4, '3' => 6, '4' => 8, '5' => 1, '6' => 3, '7' => 5, '8' => 7, '9' => 9}
-        sum = 0
-        num.reverse!
-        num.split("").each_with_index do |char, i|
-          if (i%2)==0
-            sum+=double[char]
-          else
-            sum+=char.to_i
-          end
-        end
-        sum = (9*sum)%10
-        
-        return sum.to_s
-      end
-    end
-  end
-end