quality-measure-engine 1.1.0 → 1.1.1
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- data/Gemfile +1 -1
- data/js/map_reduce_utils.js +29 -1
- data/lib/quality-measure-engine.rb +0 -1
- metadata +26 -27
- data/lib/qme/importer/provider_importer.rb +0 -97
data/Gemfile
CHANGED
@@ -7,7 +7,7 @@ gem 'bson_ext', '1.5.1', :platforms => :mri
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7
7
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gem 'rake'
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8
8
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#gem 'pry', :require => true
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9
9
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#gem 'health-data-standards', :git => 'https://github.com/projectcypress/health-data-standards.git', :branch => 'master'
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10
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-
gem 'health-data-standards', '0.7.
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10
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+
gem 'health-data-standards', '0.7.1'
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11
11
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12
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group :test do
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gem 'cover_me', '>= 1.0.0.rc5', :platforms => :ruby_19
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data/js/map_reduce_utils.js
CHANGED
@@ -116,7 +116,35 @@ function() {
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values = normalize(values);
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return _.select(values, function(value) { return value<=max && value>=min; });
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}
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119
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-
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119
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+
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120
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+
// calculates the earliest birthdate for a maximum age given a target date.
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+
// calculation is inclusive of the full year for the target age
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122
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+
// returns: (earliest birthdate that will reach by not exceed the age by the target date)
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123
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+
// age: integer in years
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+
// effective_date: end of the measurement period, in seconds
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125
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+
root.earliestBirthdayForThisAge = function(age, effective_date) {
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126
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+
return calculateDateForAge(age, effective_date, true);
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127
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+
}
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128
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+
// calculates the latest birthdate for a minimum age given a target date
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129
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+
// returns: (latest birthdate that will reach the age by the target date)
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130
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+
// age: integer in years
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131
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+
// effective_date: end of the measurement period, in seconds
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132
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+
root.latestBirthdayForThisAge = function(age, effective_date) {
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133
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+
return calculateDateForAge(age, effective_date, false);
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134
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+
}
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135
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+
// returns birth date for an age value given a specific date
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136
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+
// age: integer in years
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137
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+
// effective_date: end of the measurement period, in seconds
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138
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+
// is_inclusive: boolean for including or excluding age
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139
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+
root.calculateDateForAge = function(age, effective_date, is_inclusive) {
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140
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+
var earliest_birthdate = new Date(effective_date*1000);
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+
var difference = age;
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142
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+
if (is_inclusive) difference += 1;
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+
earliest_birthdate.setFullYear(earliest_birthdate.getFullYear()-difference);
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+
return earliest_birthdate.getTime()/1000;
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+
}
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+
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+
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root.map = function(record, population, denominator, numerator, exclusion) {
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var value = {population: false, denominator: false, numerator: false,
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exclusions: false, antinumerator: false, patient_id: record._id,
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@@ -22,7 +22,6 @@ require_relative 'qme/ext/record'
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require_relative 'qme/importer/property_matcher'
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require_relative 'qme/importer/generic_importer'
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-
require_relative 'qme/importer/provider_importer'
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require_relative 'qme/importer/measure_properties_generator'
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require 'json'
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metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: quality-measure-engine
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version: !ruby/object:Gem::Version
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-
version: 1.1.
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+
version: 1.1.1
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prerelease:
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platform: ruby
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authors:
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@@ -11,12 +11,12 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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14
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-
date: 2012-
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+
date: 2012-02-17 00:00:00.000000000 -05:00
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default_executable:
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dependencies:
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- !ruby/object:Gem::Dependency
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name: mongo
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-
requirement: &
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19
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+
requirement: &2157284660 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -24,10 +24,10 @@ dependencies:
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version: '1.3'
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type: :runtime
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *2157284660
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- !ruby/object:Gem::Dependency
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name: rubyzip
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-
requirement: &
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30
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+
requirement: &2157272260 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -35,10 +35,10 @@ dependencies:
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version: 0.9.4
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type: :runtime
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *2157272260
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- !ruby/object:Gem::Dependency
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name: nokogiri
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-
requirement: &
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+
requirement: &2157271520 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -46,10 +46,10 @@ dependencies:
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version: 1.4.4
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type: :runtime
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *2157271520
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- !ruby/object:Gem::Dependency
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name: resque
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-
requirement: &
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+
requirement: &2157270840 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -57,10 +57,10 @@ dependencies:
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version: 1.15.0
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type: :runtime
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *2157270840
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- !ruby/object:Gem::Dependency
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name: resque-status
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-
requirement: &
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+
requirement: &2157270100 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -68,10 +68,10 @@ dependencies:
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version: 0.2.3
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type: :runtime
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prerelease: false
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-
version_requirements: *
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+
version_requirements: *2157270100
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- !ruby/object:Gem::Dependency
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name: jsonschema
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74
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-
requirement: &
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+
requirement: &2157269380 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -79,10 +79,10 @@ dependencies:
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version: 2.0.0
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type: :development
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prerelease: false
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82
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-
version_requirements: *
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82
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+
version_requirements: *2157269380
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83
83
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- !ruby/object:Gem::Dependency
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84
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name: rspec
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85
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-
requirement: &
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85
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+
requirement: &2157268580 !ruby/object:Gem::Requirement
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none: false
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requirements:
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88
88
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- - ~>
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@@ -90,10 +90,10 @@ dependencies:
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90
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version: 2.5.0
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91
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type: :development
|
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92
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prerelease: false
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93
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-
version_requirements: *
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93
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+
version_requirements: *2157268580
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94
94
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- !ruby/object:Gem::Dependency
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95
95
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name: awesome_print
|
96
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-
requirement: &
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96
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+
requirement: &2157268080 !ruby/object:Gem::Requirement
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97
97
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none: false
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98
98
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requirements:
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99
99
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- - ~>
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@@ -101,10 +101,10 @@ dependencies:
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101
101
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version: '0.3'
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102
102
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type: :development
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103
103
|
prerelease: false
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104
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-
version_requirements: *
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104
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+
version_requirements: *2157268080
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105
105
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- !ruby/object:Gem::Dependency
|
106
106
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name: roo
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107
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-
requirement: &
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107
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+
requirement: &2157267620 !ruby/object:Gem::Requirement
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none: false
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109
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requirements:
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110
110
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- - ~>
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@@ -112,10 +112,10 @@ dependencies:
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version: 1.9.3
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type: :development
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114
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prerelease: false
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115
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-
version_requirements: *
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115
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+
version_requirements: *2157267620
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- !ruby/object:Gem::Dependency
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name: builder
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118
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-
requirement: &
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+
requirement: &2157267100 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -123,10 +123,10 @@ dependencies:
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version: 3.0.0
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type: :development
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prerelease: false
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126
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-
version_requirements: *
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126
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+
version_requirements: *2157267100
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127
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- !ruby/object:Gem::Dependency
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name: spreadsheet
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-
requirement: &
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+
requirement: &2157266420 !ruby/object:Gem::Requirement
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none: false
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requirements:
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132
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- - ~>
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@@ -134,10 +134,10 @@ dependencies:
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version: 0.6.5.2
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type: :development
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prerelease: false
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137
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-
version_requirements: *
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+
version_requirements: *2157266420
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138
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- !ruby/object:Gem::Dependency
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name: google-spreadsheet-ruby
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-
requirement: &
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+
requirement: &2157265900 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -145,7 +145,7 @@ dependencies:
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145
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version: 0.1.2
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type: :development
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147
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prerelease: false
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148
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-
version_requirements: *
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148
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+
version_requirements: *2157265900
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description: A library for extracting quality measure information from HITSP C32's
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and ASTM CCR's
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email: talk@projectpophealth.org
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@@ -159,7 +159,6 @@ files:
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159
159
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- lib/qme/importer/generic_importer.rb
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160
160
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- lib/qme/importer/measure_properties_generator.rb
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161
161
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- lib/qme/importer/property_matcher.rb
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162
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-
- lib/qme/importer/provider_importer.rb
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163
162
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- lib/qme/map/map_reduce_builder.rb
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164
163
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- lib/qme/map/map_reduce_executor.rb
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165
164
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- lib/qme/map/measure_calculation_job.rb
|
@@ -1,97 +0,0 @@
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1
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-
require "date"
|
2
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-
require "date/delta"
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3
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-
|
4
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-
module QME
|
5
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-
module Importer
|
6
|
-
class ProviderImporter
|
7
|
-
include Singleton
|
8
|
-
|
9
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-
# Extract Healthcare Providers from C32
|
10
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-
#
|
11
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-
# @param [Nokogiri::XML::Document] doc It is expected that the root node of this document
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12
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-
# will have the "cda" namespace registered to "urn:hl7-org:v3"
|
13
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-
# @return [Array] an array of providers found in the document
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14
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-
def extract_providers(doc, use_encounters=false)
|
15
|
-
|
16
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-
|
17
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-
xpath_base = use_encounters ? "//cda:encounter/cda:performer" : "//cda:documentationOf/cda:serviceEvent/cda:performer"
|
18
|
-
|
19
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-
performers = doc.xpath(xpath_base)
|
20
|
-
|
21
|
-
providers = performers.map do |performer|
|
22
|
-
provider = {}
|
23
|
-
entity = performer.xpath(performer, "./cda:assignedEntity")
|
24
|
-
name = entity.xpath("./cda:assignedPerson/cda:name")
|
25
|
-
provider[:title] = extract_data(name, "./cda:prefix")
|
26
|
-
provider[:given_name] = extract_data(name, "./cda:given[1]")
|
27
|
-
provider[:family_name] = extract_data(name, "./cda:family")
|
28
|
-
provider[:phone] = extract_data(entity, "./cda:telecom/@value") { |text| text.gsub("tel:", "") }
|
29
|
-
provider[:organization] = extract_data(entity, "./cda:representedOrganization/cda:name")
|
30
|
-
provider[:specialty] = extract_data(entity, "./cda:code/@code")
|
31
|
-
time = performer.xpath(performer, "./cda:time")
|
32
|
-
provider[:start] = extract_date(time, "./cda:low/@value")
|
33
|
-
provider[:end] = extract_date(time, "./cda:high/@value")
|
34
|
-
# NIST sample C32s use different OID for NPI vs C83, support both
|
35
|
-
npi = extract_data(entity, "./cda:id[@root='2.16.840.1.113883.4.6' or @root='2.16.840.1.113883.3.72.5.2']/@extension")
|
36
|
-
if ProviderImporter::valid_npi?(npi)
|
37
|
-
provider[:npi] = npi
|
38
|
-
else
|
39
|
-
puts "Warning: Invalid NPI (#{npi})"
|
40
|
-
end
|
41
|
-
provider
|
42
|
-
end
|
43
|
-
end
|
44
|
-
|
45
|
-
private
|
46
|
-
|
47
|
-
def extract_date(subject,query)
|
48
|
-
date = extract_data(subject,query)
|
49
|
-
date ? Date.parse(date).to_time.to_i : nil
|
50
|
-
end
|
51
|
-
|
52
|
-
# Returns nil if result is an empty string, block allows text munging of result if there is one
|
53
|
-
def extract_data(subject, query)
|
54
|
-
result = subject.xpath(query).text
|
55
|
-
if result == ""
|
56
|
-
nil
|
57
|
-
elsif block_given?
|
58
|
-
yield(result)
|
59
|
-
else
|
60
|
-
result
|
61
|
-
end
|
62
|
-
end
|
63
|
-
|
64
|
-
# validate the NPI, should be 10 or 15 digits total with the final digit being a
|
65
|
-
# checksum using the Luhn algorithm with additional special handling as described in
|
66
|
-
# https://www.cms.gov/NationalProvIdentStand/Downloads/NPIcheckdigit.pdf
|
67
|
-
def self.valid_npi?(npi)
|
68
|
-
return false if npi.length != 10 and npi.length != 15
|
69
|
-
return false if npi.gsub(/\d/, '').length > 0 # npi must be all digits
|
70
|
-
return false if npi.length == 15 and (npi =~ /^80840/)==nil # 15 digit npi must start with 80840
|
71
|
-
|
72
|
-
# checksum is always calculated as if 80840 prefix is present
|
73
|
-
if npi.length==10
|
74
|
-
npi = '80840'+npi
|
75
|
-
end
|
76
|
-
|
77
|
-
return luhn_checksum(npi[0,14])==npi[14]
|
78
|
-
end
|
79
|
-
|
80
|
-
def self.luhn_checksum(num)
|
81
|
-
double = {'0' => 0, '1' => 2, '2' => 4, '3' => 6, '4' => 8, '5' => 1, '6' => 3, '7' => 5, '8' => 7, '9' => 9}
|
82
|
-
sum = 0
|
83
|
-
num.reverse!
|
84
|
-
num.split("").each_with_index do |char, i|
|
85
|
-
if (i%2)==0
|
86
|
-
sum+=double[char]
|
87
|
-
else
|
88
|
-
sum+=char.to_i
|
89
|
-
end
|
90
|
-
end
|
91
|
-
sum = (9*sum)%10
|
92
|
-
|
93
|
-
return sum.to_s
|
94
|
-
end
|
95
|
-
end
|
96
|
-
end
|
97
|
-
end
|