quality-measure-engine 0.1.2 → 0.2.0

data/spec/qme/map/map_reduce_builder_spec.rb

@@ -1,64 +0,0 @@
-MAP_FUNCTION = <<END_OF_MAP_FN
-function () {
-  var value = {i: 0, d: 0, n: 0, e: 0};
-  if (this.birthdate<=-764985600) {
-    value.i++;
-    if (this.measures["0043"].encounter>=1253318400) {
-      value.d++;
-      if (this.measures["0043"].vaccination==true) {
-        value.n++;
-      } else if (false) {
-        value.e++;
-        value.d--;
-      }
-    }
-  }
-  emit(null, value);
-};
-END_OF_MAP_FN
-
-describe QME::MapReduce::Builder do
-  
-  before do
-    raw_measure_json = File.read('measures/0043/0043_NQF_PneumoniaVaccinationStatusForOlderAdults.json')
-    @measure_json = JSON.parse(raw_measure_json)
-    raw_measure_json = File.read('fixtures/complex_measure.json')
-    @complex_measure_json = JSON.parse(raw_measure_json)
-  end
-
-  it 'should extract the measure metadata' do
-    measure = QME::MapReduce::Builder.new(@measure_json, :effective_date=>Time.gm(2010, 9, 19).to_i)
-    measure.id.should eql('0043')
-  end
-  it 'should extract three parameters for measure 0043 (one provided, two calculated)' do
-    time = Time.gm(2010, 9, 19).to_i
-
-    measure = QME::MapReduce::Builder.new(@measure_json, :effective_date=>time)
-    measure.parameters.size.should eql(3)
-    measure.parameters.should have_key(:effective_date)
-    measure.parameters[:effective_date].should eql(time)
-  end
-  it 'should raise a RuntimeError if not passed all the parameters' do
-    lambda { QME::MapReduce::Builder.new(@measure_json) }.should
-      raise_error(RuntimeError, 'No value supplied for measure parameter: effective_date')
-  end
-  it 'should calculate the calculated dates correctly' do
-    date = Time.gm(2010, 9, 19).to_i
-    measure = QME::MapReduce::Builder.new(@measure_json, :effective_date=>date)
-    measure.parameters[:earliest_encounter].should eql(date-QME::MapReduce::Builder::YEAR_IN_SECONDS)
-  end
-  it 'should produce valid JavaScript expressions for the query components' do
-    date = Time.gm(2010, 9, 19).to_i
-    builder = QME::MapReduce::Builder.new(@measure_json, :effective_date=>date)
-    builder.numerator.should eql('(this.measures["0043"].vaccination==true)')
-    builder.denominator.should eql('(this.measures["0043"].encounter>='+builder.parameters[:earliest_encounter].to_s+')')
-    builder.population.should eql('(this.birthdate<='+builder.parameters[:earliest_birthdate].to_s+')')
-    builder.exception.should eql('(false)')
-    builder.map_function.should eql(MAP_FUNCTION)
-    builder.reduce_function.should eql(QME::MapReduce::Builder::REDUCE_FUNCTION)
-  end
-  it 'should handle logical combinations' do
-    builder = QME::MapReduce::Builder.new(@complex_measure_json, {})
-    builder.population.should eql('((this.measures["0043"].age>17)&&(this.measures["0043"].age<75)&&((this.measures["0043"].sex=="male")||(this.measures["0043"].sex=="female")))')
-  end
-end

data/spec/qme/measures_spec.rb

@@ -1,50 +0,0 @@
-describe QME::MapReduce::Executor do
-
-  before do
-    db_host = nil
-    if ENV['TEST_DB_HOST']
-      db_host = ENV['TEST_DB_HOST']
-    else
-      db_host = 'localhost'
-    end
-    @db = Mongo::Connection.new(db_host, 27017).db('test')
-    @measures = Dir.glob('measures/*')
-  end
-  
-  it 'should produce the expected results for each measure' do
-    print "\n"
-    @measures.each do |dir|
-      # load db with measure and sample patient records
-      files = Dir.glob(File.join(dir,'*.json'))
-      files.size.should eql(1)
-      measure_file = files[0]
-      patient_files = Dir.glob(File.join(dir, 'patients', '*.json'))
-      measure = JSON.parse(File.read(measure_file))
-      measure_id = measure['id']
-      print "Validating measure #{measure_id}"
-      @db.drop_collection('measures')
-      @db.drop_collection('records')
-      measure_collection = @db.create_collection('measures')
-      record_collection = @db.create_collection('records')
-      measure_collection.save(measure)
-      patient_files.each do |patient_file|
-        patient = JSON.parse(File.read(patient_file))
-        record_collection.save(patient)
-      end
-      
-      # load expected results
-      result_file = File.join(dir, 'result', 'result.json')
-      expected = JSON.parse(File.read(result_file))
-      
-      # evaulate measure using Map/Reduce and validate results
-      executor = QME::MapReduce::Executor.new(@db)
-      result = executor.measure_result(measure_id, :effective_date=>Time.gm(2010, 9, 19).to_i)
-      result[:population].should eql(expected['initialPopulation'])
-      result[:numerator].should eql(expected['numerator'])
-      result[:denominator].should eql(expected['denominator'])
-      result[:exceptions].should eql(expected['exclusions'])
-      print " - done\n"
-    end
-  end
-  
-end

data/spec/qme/query/json_document_builder_spec.rb

@@ -1,56 +0,0 @@
-describe QME::Query::JSONDocumentBuilder do
-
-  before do
-    raw_measure_json = File.read('measures/0043/0043_NQF_PneumoniaVaccinationStatusForOlderAdults.json')
-    @measure_json = JSON.parse(raw_measure_json)
-    raw_measure_json = File.read('fixtures/complex_measure.json')
-    @complex_measure_json = JSON.parse(raw_measure_json)
-  end
-
-  it 'should calculate dates for a measure' do
-    jdb = QME::Query::JSONDocumentBuilder.new(@measure_json)
-    jdb.parameters = {:effective_date => 1287685441}
-    jdb.calculate_dates
-    jdb.calculated_dates['earliest_birthdate'].should == -762154559
-  end
-
-  it 'should create a query for a simple measure' do
-    jdb = QME::Query::JSONDocumentBuilder.new(@measure_json, {:effective_date => 1287685441})
-    query_hash = jdb.create_query(@measure_json['denominator'])
-    query_hash.size.should be 1
-    query_hash['measures.0043.encounter'].should_not be_nil
-    query_hash['measures.0043.encounter']['$gte'].should == 1256149441
-  end
-
-  it 'should properly transform a property name' do
-    jdb = QME::Query::JSONDocumentBuilder.new(@measure_json, {:effective_date => 1287685441})
-    jdb.transform_query_property('birthdate').should == 'birthdate'
-    jdb.transform_query_property('foo').should == 'measures.0043.foo'
-  end
-
-  it 'should properly process a query leaf when it is an expression' do
-    jdb = QME::Query::JSONDocumentBuilder.new(@measure_json, {:effective_date => 1287685441})
-    args = {}
-    jdb.process_query({"encounter" => {"_gte" => "@earliest_encounter"}}, args)
-    args.size.should be 1
-    args['measures.0043.encounter'].should_not be_nil
-    args['measures.0043.encounter']['$gte'].should == 1256149441
-  end
-
-  it 'should properly process a query leaf when it is a value' do
-    jdb = QME::Query::JSONDocumentBuilder.new(@measure_json, {:effective_date => 1287685441})
-    args = {}
-    jdb.process_query({"encounter" => 'splat'}, args)
-    args.size.should be 1
-    args['measures.0043.encounter'].should_not be_nil
-    args['measures.0043.encounter'].should == 'splat'
-  end
-
-  it 'should create a query for a complex measure' do
-    jdb = QME::Query::JSONDocumentBuilder.new(@complex_measure_json)
-    query_hash = jdb.create_query(@complex_measure_json['population'])
-    query_hash['measures.0043.age']['$gt'].should == 17
-    query_hash['measures.0043.age']['$lt'].should == 75
-    query_hash['$or'].should have(2).items
-  end
-end

data/spec/schema_spec.rb

@@ -1,21 +0,0 @@
-require 'json'
-
-describe JSON, 'All JSON Schemas' do
-  it 'should conform to JSON Schema' do
-    schema = File.open('schema/schema.json', 'rb'){|f| JSON.parse(f.read)}
-    Dir.glob('schema/*.json').each do |schema_file|
-      if schema_file != 'schema/schema.json' # Don't check the schema itself
-       data = File.open(schema_file, 'rb'){|f| JSON.parse(f.read)}
-       JSON::Schema.validate(data, schema)
-      end
-    end
-  end
-end
-
-describe JSON, 'Result Example' do 
-  it 'should conform to the schema defined' do
-    schema = File.open('schema/result.json', 'rb'){|f| JSON.parse(f.read)}
-    data = File.open('fixtures/result_example.json', 'rb'){|f| JSON.parse(f.read)}
-    JSON::Schema.validate(data, schema)
-  end
-end

data/spec/spec_helper.rb

@@ -1,7 +0,0 @@
-require 'bundler/setup'
-
-PROJECT_ROOT = File.dirname(__FILE__) + '/../'
-
-require PROJECT_ROOT + 'lib/quality-measure-engine'
-
-Bundler.require(:test)

data/spec/validate_measures_spec.rb

@@ -1,21 +0,0 @@
-# Validate the measure specifications and patient samples
-
-require 'json'
-
-describe JSON, 'All measure specifications' do
-  it 'should be valid JSON' do
-    Dir.glob('measures/*/*.json').each do |measure_file|
-      measure = File.read(measure_file)
-      json = JSON.parse(measure)
-    end
-  end
-end
-
-describe JSON, 'All patient samples' do
-  it 'should be valid JSON' do
-    Dir.glob('measures/*/patients/*.json').each do |measure_file|
-      measure = File.read(measure_file)
-      json = JSON.parse(measure)
-    end
-  end
-end