qu-pcr 1.0.5 → 1.0.6

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checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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@@ -100,7 +100,7 @@ module Qu
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  class Primer3Parser
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  def initialize(p3_out)
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  if p3_out.class != String
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- $stderr.puts "Need primer3 output file content (not file name) for parsing."
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+ $stderr.puts "\tNeed primer3 output file content (not file name) for parsing."
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  end
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  @p3_out = p3_out
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  end
@@ -131,15 +131,15 @@ module Qu
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  p3_record.each do |record|
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  seq_id = record['SEQUENCE_ID']
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  if record.has_key?('PRIMER_ERROR')
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- $stderr.puts "#{record['PRIMER_ERROR']}"
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+ $stderr.puts "\t#{record['PRIMER_ERROR']}"
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  return p3_hash
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  end
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  pp_num = record['PRIMER_PAIR_NUM_RETURNED'].to_i
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  if pp_num < 1
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- $stderr.puts "Failed design for %s" % [seq_id]
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- $stderr.puts "Left: #{record['PRIMER_LEFT_EXPLAIN']}"
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- $stderr.puts "Right: #{record['PRIMER_RIGHT_EXPLAIN']}"
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- $stderr.puts "Pair: #{record['PRIMER_PAIR_EXPLAIN']}"
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+ $stderr.puts "\tFailed design for %s" % [seq_id]
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+ $stderr.puts "\tLeft: #{record['PRIMER_LEFT_EXPLAIN']}"
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+ $stderr.puts "\tRight: #{record['PRIMER_RIGHT_EXPLAIN']}"
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+ $stderr.puts "\tPair: #{record['PRIMER_PAIR_EXPLAIN']}"
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  #exit
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  end
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  p3_hash[seq_id] = []
@@ -1,5 +1,5 @@
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  module Qu
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  module Pcr
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- VERSION = "1.0.5"
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+ VERSION = "1.0.6"
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  end
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: qu-pcr
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  version: !ruby/object:Gem::Version
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- version: 1.0.5
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+ version: 1.0.6
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  platform: ruby
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  authors:
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  - Wubin Qu
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2014-08-13 00:00:00.000000000 Z
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+ date: 2014-08-20 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: qu-utils