qu-pcr 1.0.5 → 1.0.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: b839403da7b40c9d64f37727ed806d342d60dee6
-  data.tar.gz: 92d8774dfe9545059d248cbab2c1fd912c080349
+  metadata.gz: baf63922bc490a5fb2047305b57096f3f424244b
+  data.tar.gz: 3e6b16231ead303af4efcfb0c71ac28a86ee1350
 SHA512:
-  metadata.gz: 75f2c276a539396876c0b1614a573e74c39d041feeae68283f13fd2f29ff1c0c2ca5d2a69a8c13e296f9aa47867194ee2e65feef25e7fe3a3f6bb5fea12d5b67
-  data.tar.gz: da6c34009a85abeffc7cbeaa410da504d2079d4b9645d4a45d84562cc35814b38d86bf791293c27a42335a49386baf4d5c824b4e95ac4216ccaeb65e7473dcc6
+  metadata.gz: f1e143acd1b44448d7753dcb8cf0df196f8409d552f5d71bd32dd18f33cba31e7569fb6349f4b1ee7b58f3dded6d9222c82d355b9b420a7e6cb5a9273c1030b6
+  data.tar.gz: b5f11469eea2a598827f24e5891f351ece38c1b38e2d020da8e301b11f397a0731f1a156c78199bc3d63f2e8a5447d24ed8eebaf4684abfcb467a27de56624bf

data/lib/qu/pcr/primer3.rb

@@ -100,7 +100,7 @@ module Qu
     class Primer3Parser
       def initialize(p3_out)
         if p3_out.class != String
-          $stderr.puts "Need primer3 output file content (not file name) for parsing."
+          $stderr.puts "\tNeed primer3 output file content (not file name) for parsing."
         end
         @p3_out = p3_out
       end
@@ -131,15 +131,15 @@ module Qu
         p3_record.each do |record|
           seq_id = record['SEQUENCE_ID']
           if record.has_key?('PRIMER_ERROR')
-            $stderr.puts "#{record['PRIMER_ERROR']}"
+            $stderr.puts "\t#{record['PRIMER_ERROR']}"
             return p3_hash
           end
           pp_num = record['PRIMER_PAIR_NUM_RETURNED'].to_i
           if pp_num < 1
-            $stderr.puts "Failed design for %s" % [seq_id]
-            $stderr.puts "Left: #{record['PRIMER_LEFT_EXPLAIN']}"
-            $stderr.puts "Right: #{record['PRIMER_RIGHT_EXPLAIN']}"
-            $stderr.puts "Pair: #{record['PRIMER_PAIR_EXPLAIN']}"
+            $stderr.puts "\tFailed design for %s" % [seq_id]
+            $stderr.puts "\tLeft: #{record['PRIMER_LEFT_EXPLAIN']}"
+            $stderr.puts "\tRight: #{record['PRIMER_RIGHT_EXPLAIN']}"
+            $stderr.puts "\tPair: #{record['PRIMER_PAIR_EXPLAIN']}"
             #exit
           end
           p3_hash[seq_id] = []

data/lib/qu/pcr/version.rb

@@ -1,5 +1,5 @@
 module Qu
   module Pcr
-    VERSION = "1.0.5"
+    VERSION = "1.0.6"
   end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: qu-pcr
 version: !ruby/object:Gem::Version
-  version: 1.0.5
+  version: 1.0.6
 platform: ruby
 authors:
 - Wubin Qu
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-08-13 00:00:00.000000000 Z
+date: 2014-08-20 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: qu-utils