qu-pcr 1.0.5 → 1.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/qu/pcr/primer3.rb +6 -6
- data/lib/qu/pcr/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: baf63922bc490a5fb2047305b57096f3f424244b
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4
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data.tar.gz: 3e6b16231ead303af4efcfb0c71ac28a86ee1350
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5
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SHA512:
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6
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-
metadata.gz:
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-
data.tar.gz:
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6
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+
metadata.gz: f1e143acd1b44448d7753dcb8cf0df196f8409d552f5d71bd32dd18f33cba31e7569fb6349f4b1ee7b58f3dded6d9222c82d355b9b420a7e6cb5a9273c1030b6
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7
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data.tar.gz: b5f11469eea2a598827f24e5891f351ece38c1b38e2d020da8e301b11f397a0731f1a156c78199bc3d63f2e8a5447d24ed8eebaf4684abfcb467a27de56624bf
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data/lib/qu/pcr/primer3.rb
CHANGED
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@@ -100,7 +100,7 @@ module Qu
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class Primer3Parser
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def initialize(p3_out)
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if p3_out.class != String
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$stderr.puts "
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$stderr.puts "\tNeed primer3 output file content (not file name) for parsing."
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end
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@p3_out = p3_out
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end
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@@ -131,15 +131,15 @@ module Qu
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p3_record.each do |record|
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seq_id = record['SEQUENCE_ID']
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if record.has_key?('PRIMER_ERROR')
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$stderr.puts "#{record['PRIMER_ERROR']}"
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$stderr.puts "\t#{record['PRIMER_ERROR']}"
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return p3_hash
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end
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pp_num = record['PRIMER_PAIR_NUM_RETURNED'].to_i
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if pp_num < 1
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$stderr.puts "
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$stderr.puts "
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$stderr.puts "
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$stderr.puts "
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$stderr.puts "\tFailed design for %s" % [seq_id]
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$stderr.puts "\tLeft: #{record['PRIMER_LEFT_EXPLAIN']}"
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$stderr.puts "\tRight: #{record['PRIMER_RIGHT_EXPLAIN']}"
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$stderr.puts "\tPair: #{record['PRIMER_PAIR_EXPLAIN']}"
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#exit
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end
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p3_hash[seq_id] = []
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data/lib/qu/pcr/version.rb
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: qu-pcr
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version: !ruby/object:Gem::Version
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version: 1.0.
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version: 1.0.6
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platform: ruby
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authors:
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- Wubin Qu
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-08-
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date: 2014-08-20 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: qu-utils
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