qrda_generator 1.0.0
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- data/Gemfile +12 -0
- data/Rakefile +12 -0
- data/lib/qrda_generator/export/cat_1.rb +136 -0
- data/lib/qrda_generator/export/entry_template_resolver.rb +29 -0
- data/lib/qrda_generator/railtie.rb +7 -0
- data/lib/qrda_generator.rb +20 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.1.cat1.erb +14 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.101.cat1.erb +25 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.103.cat1.erb +12 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.105.cat1.erb +60 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.11.cat1.erb +40 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.12.cat1.erb +50 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.13.cat1.erb +37 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.14.cat1.erb +35 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.17.cat1.erb +22 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.18.cat1.erb +21 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.2.cat1.erb +28 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.20.cat1.erb +20 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.22.cat1.erb +21 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.23.cat1.erb +47 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.28.cat1.erb +20 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.3.cat1.erb +24 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.31.cat1.erb +20 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.32.cat1.erb +15 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.34.cat1.erb +58 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.37.cat1.erb +20 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.38.cat1.erb +16 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.4.cat1.erb +27 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.40.cat1.erb +17 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.41.cat1.erb +46 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.42.cat1.erb +37 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.43.cat1.erb +24 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.44.cat1.erb +24 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.45.cat1.erb +26 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.46.cat1.erb +30 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.47.cat1.erb +26 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.51.cat1.erb +13 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.54.cat1.erb +16 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.55.cat1.erb +10 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.57.cat1.erb +19 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.59.cat1.erb +17 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.62.cat1.erb +36 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.63.cat1.erb +23 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.64.cat1.erb +29 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.66.cat1.erb +34 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.69.cat1.erb +23 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.7.cat1.erb +29 -0
- data/templates/_2.16.840.1.113883.10.20.24.3.76.cat1.erb +32 -0
- data/templates/_measures.cat1.erb +68 -0
- data/templates/_ordinality.cat1.erb +4 -0
- data/templates/_patient_data.cat1.erb +14 -0
- data/templates/_reason.cat1.erb +16 -0
- data/templates/_record_target.cat1.erb +39 -0
- data/templates/_reporting_parameters.cat1.erb +24 -0
- data/templates/_result_value.cat1.erb +16 -0
- data/templates/show.cat1.erb +125 -0
- metadata +197 -0
data/Gemfile
ADDED
data/Rakefile
ADDED
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require 'rake/testtask'
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require "simplecov"
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Rake::TestTask.new(:test_unit) do |t|
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t.libs << "test"
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t.test_files = FileList['test/**/*_test.rb']
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t.verbose = true
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end
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task :test => [:test_unit] do
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system("open coverage/index.html")
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end
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module QrdaGenerator
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module Export
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module Cat1
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include HealthDataStandards::Export::TemplateHelper
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include HealthDataStandards::Util
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include HealthDataStandards::SVS
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@@vs_map = nil
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def export(patient, measures, start_date, end_date)
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self.template_format = "cat1"
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self.template_directory = File.dirname(__FILE__)
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render(:template => 'show', :locals => {:patient => patient, :measures => measures,
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:start_date => start_date, :end_date => end_date})
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end
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def value_set_map
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@@vs_map ||= Hash[*ValueSet.all.map{ |p| [p.oid, p] }.flatten]
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end
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# Find all of the entries on a patient that match the given data criteria
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def entries_for_data_criteria(data_criteria, patient)
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data_criteria_oid = HQMFTemplateHelper.template_id_by_definition_and_status(data_criteria.definition,
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data_criteria.status || '',
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data_criteria.negation)
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filtered_entries = []
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case data_criteria_oid
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when '2.16.840.1.113883.3.560.1.404'
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filtered_entries = handle_patient_expired(patient)
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when '2.16.840.1.113883.3.560.1.401'
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filtered_entries = handle_clinical_trial_participant(patient)
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else
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entries = patient.entries_for_oid(data_criteria_oid)
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codes = []
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vs = value_set_map[data_criteria.code_list_id]
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if vs
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codes = vs.code_set_map
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else
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QrdaGenerator.logger.warn("No codes for #{data_criteria.code_list_id}")
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end
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filtered_entries = entries.find_all do |entry|
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# This special case is for when the code list is a reason
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if data_criteria.code_list_id =~ /2\.16\.840\.1\.113883\.3\.526\.3\.100[7-9]/
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entry.negation_reason.present? && codes.first['values'].include?(entry.negation_reason['code'])
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else
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# The !! hack makes sure that negation_ind is a boolean
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entry.is_in_code_set?(codes) && !!entry.negation_ind == data_criteria.negation
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end
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end
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end
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if filtered_entries.empty?
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QrdaGenerator.logger.debug("No entries for #{data_criteria.title}")
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end
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filtered_entries
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end
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# Given a set of measures, find the data criteria/value set pairs that are unique across all of them
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# Returns an Array of Hashes. Hashes will have a three key/value pairs. One for the data criteria oid,
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# one for the value set oid and one for the data criteria itself
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def unique_data_criteria(measures)
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all_data_criteria = measures.map {|measure| measure.all_data_criteria}.flatten
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dc_oids_and_vs_oids = all_data_criteria.map do |data_criteria|
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data_criteria_oid = HQMFTemplateHelper.template_id_by_definition_and_status(data_criteria.definition,
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(data_criteria.status || ""),
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data_criteria.negation)
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value_set_oid = data_criteria.code_list_id
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{'data_criteria_oid' => data_criteria_oid, 'value_set_oid' => value_set_oid, 'data_criteria' => data_criteria}
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end
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dc_oids_and_vs_oids.uniq_by {|thingy| [thingy['data_criteria_oid'], thingy['value_set_oid']]}
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end
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def render_data_criteria(dc_oid, vs_oid, entries)
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html_array = entries.map do |entry|
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if dc_oid == '2.16.840.1.113883.3.560.1.1001'
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# This is a special case. This HQMF OID maps to more than one QRDA OID.
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# So we need to try to figure out what template we should use based on the
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# content of the entry
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if vs_oid == '2.16.840.1.113883.3.526.3.1279'
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# Patient Characteristic Observation Assertion template for
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# Patient Characteristic: ECOG Performance Status-Poor
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render(:partial => '2.16.840.1.113883.10.20.24.3.103', :locals => {:entry => entry,
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:value_set_oid => vs_oid})
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elsif vs_oid == "2.16.840.1.113883.3.117.1.7.1.402" || vs_oid == "2.16.840.1.113883.3.117.1.7.1.403"
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# Patient Charasteristic Gestational Age
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render(:partial => '2.16.840.1.113883.10.20.24.3.101', :locals => {:entry => entry,
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:value_set_oid => vs_oid})
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end
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else
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render(:partial => EntryTemplateResolver.partial_for(dc_oid), :locals => {:entry => entry,
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:value_set_oid => vs_oid})
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end
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end
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html_array.join("\n")
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end
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def render_patient_data(patient, measures)
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udcs = unique_data_criteria(measures)
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data_criteria_html = udcs.map do |udc|
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entries = entries_for_data_criteria(udc['data_criteria'], patient)
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render_data_criteria(udc['data_criteria_oid'], udc['value_set_oid'], entries)
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end
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data_criteria_html.compact.join("\n")
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end
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def negation_indicator(entry)
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if entry.negation_ind
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'negationInd="true"'
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else
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''
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end
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end
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def handle_clinical_trial_participant(patient)
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if patient.clinical_trial_participant
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[{dummy_entry: true}]
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else
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[]
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end
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end
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def handle_patient_expired(patient)
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if patient.expired
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[OpenStruct.new(start_date: patient.deathdate)]
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else
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[]
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end
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end
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extend self
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end
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end
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end
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HealthDataStandards::Export::RenderingContext.class_eval do
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include QrdaGenerator::Export::Cat1
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end
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module QrdaGenerator
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module Export
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module EntryTemplateResolver
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def hqmf_qrda_oid_map
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if @hqmf_qrda_oid_map.blank?
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template_id_file = File.expand_path('../hqmf-qrda-oids.json', __FILE__)
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@hqmf_qrda_oid_map = JSON.parse(File.read(template_id_file))
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end
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@hqmf_qrda_oid_map
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end
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def qrda_oid_exist?(oid)
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hqmf_qrda_oid_map.any? {|map_tuple| map_tuple['qrda_oid'] == oid}
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end
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def qrda_oid_for_hqmf_oid(hqmf_oid)
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oid_tuple = hqmf_qrda_oid_map.find {|map_tuple| map_tuple['hqmf_oid'] == hqmf_oid }
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if oid_tuple.nil?
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puts "no qrda oid for #{hqmf_oid}"
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end
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oid_tuple['qrda_oid']
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end
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alias :partial_for :qrda_oid_for_hqmf_oid
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extend self
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end
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end
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end
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require 'health-data-standards'
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require 'hqmf-parser'
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require 'ostruct'
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require 'log4r'
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require_relative 'qrda_generator/export/cat_1'
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require_relative 'qrda_generator/export/entry_template_resolver'
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module QrdaGenerator
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class << self
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attr_accessor :logger
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end
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end
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if defined?(Rails)
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require_relative 'qrda_generator/railtie'
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else
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QrdaGenerator.logger = Log4r::Logger.new("QRDA Generator")
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QrdaGenerator.logger.outputters = Log4r::Outputter.stdout
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end
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<entry>
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<observation classCode="OBS" moodCode="GOL">
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<!-- 2.16.840.1.113883.10.20.22.4.44 Plan of Care Activity Observation -->
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<templateId root="2.16.840.1.113883.10.20.22.4.44"/>
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<templateId root="2.16.840.1.113883.10.20.24.3.1"/>
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<id root="<%= entry.id %>"/>
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<%== code_display(entry, :extra_content => "sdtc:valueSet=\"#{value_set_oid}\"") %>
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<text><%= entry.description %></text>
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<statusCode code="active"/>
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<effectiveTime>
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<low <%= value_or_null_flavor(entry.start_time) %>/>
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</effectiveTime>
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</observation>
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</entry>
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<entry>
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<observation classCode="OBS" moodCode="EVN">
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<templateId root="2.16.840.1.113883.10.20.24.3.101"/>
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<id root="<%= entry.id %>"/>
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<code code="57036006"
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codeSystem="2.16.840.1.113883.6.96"
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codeSystemName="SNOMED-CT"
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displayName="length of gestation"/>
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<statusCode code="completed"/>
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<effectiveTime <%= value_or_null_flavor(entry.as_point_in_time) %>/>
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<!-- ?Note: valueSet of PQ "d" and "wk"-->
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<value xsi:type="PQ"
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<% if entry.codes['SNOMED-CT'].include?('80487005')-%>
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value="39"
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<% elsif entry.codes['SNOMED-CT'].include?('931004')-%>
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value="36"
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<% elsif entry.codes['SNOMED-CT'].include?('43697006')-%>
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value="37"
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<% else -%>
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nullFlavor="UNK"
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<% end -%>
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unit="wk"/>
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</observation>
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</entry>
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<entry>
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<observation classCode="OBS" moodCode="EVN">
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<templateId root="2.16.840.1.113883.10.20.24.3.103"/>
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<id root="<%= entry.id %>"/>
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<code code="ASSERTION" codeSystem="2.16.840.1.113883.5.4" />
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<statusCode code="completed" />
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<effectiveTime <%= value_or_null_flavor(entry.start_time) %>/>
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<%== code_display(entry, 'preferred_code_sets' => ['SNOMED-CT'],
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'tag_name' => 'value',
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'extra_content' => "xsi:type=\"CD\" sdtc:valueSet=\"#{value_set_oid}\"") %>
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</observation>
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</entry>
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<entry>
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<act classCode="ACT" moodCode="EVN">
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<!-- Discharge Medication Entry -->
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<templateId root="2.16.840.1.113883.10.20.24.4.105"/>
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<id root="<%= entry.id %>"/>
|
6
|
+
<code code="10183-2"
|
7
|
+
codeSystem="2.16.840.1.113883.6.1"
|
8
|
+
codeSystemName="LOINC"
|
9
|
+
displayName="Discharge medication"/>
|
10
|
+
<statusCode code="active"/>
|
11
|
+
<effectiveTime>
|
12
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
13
|
+
</effectiveTime>
|
14
|
+
<entryRelationship typeCode="SUBJ">
|
15
|
+
<substanceAdministration moodCode="EVN" classCode="SBADM">
|
16
|
+
<!-- Medication Activity (consolidation) template -->
|
17
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.16"/>
|
18
|
+
<!-- Medication, Active template -->
|
19
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.41"/>
|
20
|
+
|
21
|
+
<id root="<%= UUID.generate %>"/>
|
22
|
+
<text><%= entry.description %></text>
|
23
|
+
<statusCode code="active"/>
|
24
|
+
<effectiveTime xsi:type="IVL_TS">
|
25
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
26
|
+
<high <%= value_or_null_flavor(entry.end_time) %>/>
|
27
|
+
</effectiveTime>
|
28
|
+
|
29
|
+
<% if entry.route.present? -%>
|
30
|
+
<!-- Attribute: route -->
|
31
|
+
<routeCode code="<%= entry.route['code'] %>" codeSystem="<%= entry.route['codeSystem'] %>"/>
|
32
|
+
<% end -%>
|
33
|
+
|
34
|
+
<!-- Attribute: dose -->
|
35
|
+
<% if entry.dose.present? -%>
|
36
|
+
<doseQuantity value="<%= entry.dose['value']%>"/>
|
37
|
+
<% end -%>
|
38
|
+
|
39
|
+
|
40
|
+
<% if entry.product_form.present? -%>
|
41
|
+
<administrationUnitCode code="<%= entry.product_form['code'] %>" codeSystem="<%= entry.product_form['codeSystem'] %>"/>
|
42
|
+
<% end -%>
|
43
|
+
|
44
|
+
<consumable>
|
45
|
+
<manufacturedProduct classCode="MANU">
|
46
|
+
<!-- Medication Information (consolidation) template -->
|
47
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.23"/>
|
48
|
+
<id root="<%= UUID.generate %>"/>
|
49
|
+
<manufacturedMaterial>
|
50
|
+
<%== code_display(entry, :extra_content => "sdtc:valueSet=\"#{value_set_oid}\"") %>
|
51
|
+
</manufacturedMaterial>
|
52
|
+
<manufacturerOrganization>
|
53
|
+
<name>Medication Factory Inc.</name>
|
54
|
+
</manufacturerOrganization>
|
55
|
+
</manufacturedProduct>
|
56
|
+
</consumable>
|
57
|
+
</substanceAdministration>
|
58
|
+
</entryRelationship>
|
59
|
+
</act>
|
60
|
+
</entry>
|
@@ -0,0 +1,40 @@
|
|
1
|
+
<entry>
|
2
|
+
<!--Diagnosis active: diabetes-->
|
3
|
+
<observation classCode="OBS" moodCode="EVN">
|
4
|
+
<!-- Problem observation template -->
|
5
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.4"/>
|
6
|
+
<!-- Diagnosis active template -->
|
7
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.11"/>
|
8
|
+
<id root="<%= entry.id %>"/>
|
9
|
+
<code code="282291009" displayName="diagnosis" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED-CT"/>
|
10
|
+
<text><%= entry.description %></text>
|
11
|
+
<statusCode code="completed"/>
|
12
|
+
<effectiveTime>
|
13
|
+
<!-- Attribute: admission datetime -->
|
14
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
15
|
+
<!-- Attribute: discharge datetime -->
|
16
|
+
<high <%= value_or_null_flavor(entry.end_time) %>/>
|
17
|
+
</effectiveTime>
|
18
|
+
<%== code_display(entry, {'tag_name' => 'value', 'preferred_code_sets' => ['LOINC', 'SNOMED-CT', 'ICD-9-CM', 'ICD-10-CM'],
|
19
|
+
'extra_content' => "xsi:type=\"CD\" sdtc:valueSet=\"#{value_set_oid}\""}) %>
|
20
|
+
|
21
|
+
<entryRelationship typeCode="REFR">
|
22
|
+
<observation classCode="OBS" moodCode="EVN">
|
23
|
+
<!-- Problem Status (consolidation) template -->
|
24
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.6"/>
|
25
|
+
<!-- Problem Status, Active template -->
|
26
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.94"/>
|
27
|
+
<id root="<%= UUID.generate %>"/>
|
28
|
+
<code code="33999-4"
|
29
|
+
codeSystem="2.16.840.1.113883.6.1"
|
30
|
+
codeSystemName="LOINC"
|
31
|
+
displayName="status"/>
|
32
|
+
<statusCode code="completed"/>
|
33
|
+
<value xsi:type="CD" code="55561003"
|
34
|
+
displayName="active"
|
35
|
+
codeSystem="2.16.840.1.113883.6.96"
|
36
|
+
codeSystemName="SNOMED CT"/>
|
37
|
+
</observation>
|
38
|
+
</entryRelationship>
|
39
|
+
</observation>
|
40
|
+
</entry>
|
@@ -0,0 +1,50 @@
|
|
1
|
+
<entry typeCode="DRIV">
|
2
|
+
<organizer moodCode="EVN" classCode="CLUSTER">
|
3
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.45"/>
|
4
|
+
<!-- Family history organizer template -->
|
5
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.12"/>
|
6
|
+
<statusCode code="completed"/>
|
7
|
+
<effectiveTime>
|
8
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
9
|
+
<high <%= value_or_null_flavor(entry.end_time) %>/>
|
10
|
+
</effectiveTime>
|
11
|
+
<!-- The subject is currently hardcoded to father -->
|
12
|
+
<subject>
|
13
|
+
<relatedSubject classCode="PRS">
|
14
|
+
<code code="FTH" displayName="Father"
|
15
|
+
codeSystemName="HL7RoleCode"
|
16
|
+
codeSystem="2.16.840.1.113883.5.111">
|
17
|
+
<translation code="9947008"
|
18
|
+
displayName="Biological father"
|
19
|
+
codeSystemName="SNOMED CT"
|
20
|
+
codeSystem="2.16.840.1.113883.6.96"/>
|
21
|
+
</code>
|
22
|
+
<subject>
|
23
|
+
<administrativeGenderCode
|
24
|
+
code="M" codeSystem="2.16.840.1.113883.5.1"
|
25
|
+
codeSystemName="HL7AdministrativeGender"
|
26
|
+
displayName="Male"/>
|
27
|
+
<birthTime value="1912"/>
|
28
|
+
</subject>
|
29
|
+
</relatedSubject>
|
30
|
+
</subject>
|
31
|
+
<component>
|
32
|
+
<observation classCode="OBS" moodCode="EVN">
|
33
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.46"/>
|
34
|
+
<id root="<%= entry.id %>"/>
|
35
|
+
<code code="55607006" displayName="Problem"
|
36
|
+
codeSystemName="SNOMED CT"
|
37
|
+
codeSystem="2.16.840.1.113883.6.96"/>
|
38
|
+
<statusCode code="completed"/>
|
39
|
+
<effectiveTime>
|
40
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
41
|
+
<high <%= value_or_null_flavor(entry.end_time) %>/>
|
42
|
+
</effectiveTime>
|
43
|
+
<%== code_display(entry, 'preferred_code_sets' => ['SNOMED-CT'],
|
44
|
+
'tag_name' => 'value',
|
45
|
+
'extra_content' => "xsi:type=\"CD\" sdtc:valueSet=\"#{value_set_oid}\"") %>
|
46
|
+
</observation>
|
47
|
+
</component>
|
48
|
+
</organizer>
|
49
|
+
</entry>
|
50
|
+
|
@@ -0,0 +1,37 @@
|
|
1
|
+
<entry>
|
2
|
+
<observation classCode="OBS" moodCode="EVN">
|
3
|
+
<!-- Problem observation template -->
|
4
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.4"/>
|
5
|
+
<!-- Diagnosis, inactive template -->
|
6
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.13"/>
|
7
|
+
<id root="<%= entry.id %>"/>
|
8
|
+
<code code="282291009" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED CT" displayName="diagnosis"/>
|
9
|
+
|
10
|
+
<statusCode code="completed"/>
|
11
|
+
|
12
|
+
<effectiveTime>
|
13
|
+
<!-- Attribute: Start Datetime -->
|
14
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
15
|
+
<!-- Attribute: Stop Datetime -->
|
16
|
+
<high <%= value_or_null_flavor(entry.end_time) %>/>
|
17
|
+
</effectiveTime>
|
18
|
+
<%== render(:partial => 'ordinality', :locals => {:entry => entry}) %>
|
19
|
+
|
20
|
+
<%== code_display(entry, 'tag_name' => 'value', 'preferred_code_sets' => ['SNOMED-CT', 'ICD-9-CM', 'ICD-10-CM', 'LOINC'], 'extra_content' => "xsi:type=\"CD\" sdtc:valueSet=\"#{value_set_oid}\"") %>
|
21
|
+
<!-- Status -->
|
22
|
+
<entryRelationship typeCode="REFR">
|
23
|
+
<observation classCode="OBS" moodCode="EVN">
|
24
|
+
<!-- Problem Status (consolidation) template -->
|
25
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.6"/>
|
26
|
+
<!-- Problem Status, Inactive template -->
|
27
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.95"/>
|
28
|
+
<id root="<%= UUID.generate %>"/>
|
29
|
+
<code code="33999-4" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="status"/>
|
30
|
+
<statusCode code="completed"/>
|
31
|
+
<value code="73425007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED CT" displayName="inactive" xsi:type="CD"/>
|
32
|
+
</observation>
|
33
|
+
|
34
|
+
</entryRelationship>
|
35
|
+
|
36
|
+
</observation>
|
37
|
+
</entry>
|
@@ -0,0 +1,35 @@
|
|
1
|
+
<entry>
|
2
|
+
<observation classCode="OBS" moodCode="EVN">
|
3
|
+
<!-- Problem observation template -->
|
4
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.4"/>
|
5
|
+
<!-- Diagnosis, resolved template -->
|
6
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.14"/>
|
7
|
+
<id root="<%= entry.id %>"/>
|
8
|
+
<code code="282291009" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED CT" displayName="diagnosis"/>
|
9
|
+
|
10
|
+
<statusCode code="completed"/>
|
11
|
+
<effectiveTime>
|
12
|
+
<!-- Attribute: Start Datetime -->
|
13
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
14
|
+
<!-- Attribute: Stop Datetime -->
|
15
|
+
<high <%= value_or_null_flavor(entry.end_time) %>/>
|
16
|
+
</effectiveTime>
|
17
|
+
<%== render(:partial => 'ordinality', :locals => {:entry => entry}) %>
|
18
|
+
|
19
|
+
<%== code_display(entry, 'tag_name' => 'value', 'preferred_code_sets' => ['SNOMED-CT', 'ICD-9-CM', 'ICD-10-CM', 'CPT'],
|
20
|
+
'extra_content' => "xsi:type=\"CD\" sdtc:valueSet=\"#{value_set_oid}\"") %>
|
21
|
+
<!-- Status -->
|
22
|
+
<entryRelationship typeCode="REFR">
|
23
|
+
<observation classCode="OBS" moodCode="EVN">
|
24
|
+
<!-- Problem Status (consolidation) template -->
|
25
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.6"/>
|
26
|
+
<!-- Problem Status, Resolved template -->
|
27
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.96"/>
|
28
|
+
<id root="<%= UUID.generate %>"/>
|
29
|
+
<code code="33999-4" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="status"/>
|
30
|
+
<statusCode code="completed"/>
|
31
|
+
<value code="413322009" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED CT" displayName="resolved" xsi:type="CD"/>
|
32
|
+
</observation>
|
33
|
+
</entryRelationship>
|
34
|
+
</observation>
|
35
|
+
</entry>
|
@@ -0,0 +1,22 @@
|
|
1
|
+
<entry>
|
2
|
+
<observation classCode="OBS" moodCode="RQO">
|
3
|
+
<!-- Consolidated Plan of Care Activity Observation
|
4
|
+
templateId (Implied Template) -->
|
5
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.44"/>
|
6
|
+
<!-- Diagnostic Study, Order template -->
|
7
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.17"/>
|
8
|
+
<id root="<%= entry.id %>"/>
|
9
|
+
<%== code_display(entry, 'preferred_code_sets' => ['LOINC'], 'extra_content' => "sdtc:valueSet=\"#{value_set_oid}\"") %>
|
10
|
+
<text><%= entry.description %></text>
|
11
|
+
<statusCode code="new"/>
|
12
|
+
|
13
|
+
<!-- Attribute: datetime -->
|
14
|
+
<author>
|
15
|
+
<time <%= value_or_null_flavor(entry.as_point_in_time) %>/>
|
16
|
+
<assignedAuthor>
|
17
|
+
<id nullFlavor="NA" root="<%= UUID.generate %>"/>
|
18
|
+
</assignedAuthor>
|
19
|
+
</author>
|
20
|
+
|
21
|
+
</observation>
|
22
|
+
</entry>
|
@@ -0,0 +1,21 @@
|
|
1
|
+
<entry>
|
2
|
+
<observation classCode="OBS" moodCode="EVN" <%== negation_indicator(entry) %>>
|
3
|
+
<!-- Consolidated Procedure Activity Observation templateId
|
4
|
+
(Implied Template) -->
|
5
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.13"/>
|
6
|
+
<!-- Diagnostic Study, Performed template -->
|
7
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.18"/>
|
8
|
+
<id root="<%= entry.id %>"/>
|
9
|
+
<%== code_display(entry, 'preferred_code_sets' => ['SNOMED-CT', 'ICD-9-CM', 'ICD-10-CM'], 'extra_content' => "sdtc:valueSet=\"#{value_set_oid}\"") %>
|
10
|
+
<text><%= entry.description %></text>
|
11
|
+
<statusCode code="completed"/>
|
12
|
+
<effectiveTime>
|
13
|
+
<!-- Attribute: Start Datetime -->
|
14
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
15
|
+
<!-- Attribute: End Datetime -->
|
16
|
+
<high <%= value_or_null_flavor(entry.end_time) %>/>
|
17
|
+
</effectiveTime>
|
18
|
+
<%== render(:partial => 'result_value', :locals => {:entry => entry}) %>
|
19
|
+
<%== render(:partial => 'reason', :locals => {:entry => entry}) %>
|
20
|
+
</observation>
|
21
|
+
</entry>
|
@@ -0,0 +1,28 @@
|
|
1
|
+
<entry>
|
2
|
+
<act classCode="ACT" moodCode="EVN">
|
3
|
+
<!-- Communication from patient to provider -->
|
4
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.2"/>
|
5
|
+
<id root="<%= entry.id %>"/>
|
6
|
+
<%== code_display(entry, :extra_content => "sdtc:valueSet=\"#{value_set_oid}\"") %>
|
7
|
+
<text>
|
8
|
+
<%= entry.description %>
|
9
|
+
</text>
|
10
|
+
<statusCode code="completed"/>
|
11
|
+
<effectiveTime>
|
12
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
13
|
+
</effectiveTime>
|
14
|
+
|
15
|
+
<participant typeCode="AUT">
|
16
|
+
<participantRole classCode="PAT">
|
17
|
+
<code code="116154003" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED CT" displayName="Patient"/>
|
18
|
+
</participantRole>
|
19
|
+
</participant>
|
20
|
+
|
21
|
+
<participant typeCode="IRCP">
|
22
|
+
<participantRole classCode="ASSIGNED">
|
23
|
+
<code code="158965000" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED CT" displayName="Medical Practitioner"/>
|
24
|
+
</participantRole>
|
25
|
+
</participant>
|
26
|
+
|
27
|
+
</act>
|
28
|
+
</entry>
|
@@ -0,0 +1,20 @@
|
|
1
|
+
<entry>
|
2
|
+
<observation classCode="OBS" moodCode="EVN" <%== negation_indicator(entry) %>>
|
3
|
+
<!-- Consolidated Result Observation templateId (Implied Template) -->
|
4
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.2"/>
|
5
|
+
<!-- Diagnostic Study, Result template -->
|
6
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.20"/>
|
7
|
+
<id root="<%= entry.id %>"/>
|
8
|
+
<%== code_display(entry, 'preferred_code_sets' => ['SNOMED-CT', 'LOINC'],
|
9
|
+
'extra_content' => "xsi:type=\"CD\" sdtc:valueSet=\"#{value_set_oid}\"") %>
|
10
|
+
<text><%= entry.description %></text>
|
11
|
+
<statusCode code="completed"/>
|
12
|
+
|
13
|
+
<effectiveTime>
|
14
|
+
<low <%= value_or_null_flavor(entry.start_time) %>/>
|
15
|
+
<high <%= value_or_null_flavor(entry.end_time) %>/>
|
16
|
+
</effectiveTime>
|
17
|
+
<%== render(:partial => 'result_value', :locals => {:entry => entry}) %>
|
18
|
+
<%== render(:partial => 'reason', :locals => {:entry => entry}) %>
|
19
|
+
</observation>
|
20
|
+
</entry>
|
@@ -0,0 +1,21 @@
|
|
1
|
+
<entry>
|
2
|
+
<encounter classCode="ENC" moodCode="RQO">
|
3
|
+
<!-- Plan of Care Activity Encounter template -->
|
4
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.40"/>
|
5
|
+
<!-- Encounter order template -->
|
6
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.22"/>
|
7
|
+
<id root="<%= entry.id %>"/>
|
8
|
+
<%== code_display(entry, :extra_content => "sdtc:valueSet=\"#{value_set_oid}\"") %>
|
9
|
+
<text><%= entry.description %></text>
|
10
|
+
<statusCode code="new"/>
|
11
|
+
|
12
|
+
<!-- Attribute: datetime -->
|
13
|
+
<author>
|
14
|
+
<time <%= value_or_null_flavor(entry.start_time) %>/>
|
15
|
+
<assignedAuthor>
|
16
|
+
<id root="<%= UUID.generate %>"/>
|
17
|
+
</assignedAuthor>
|
18
|
+
</author>
|
19
|
+
|
20
|
+
</encounter>
|
21
|
+
</entry>
|